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<art>
   <ui>1476-9255-4-18</ui>
   <ji>1476-9255</ji>
   <fm>
      <dochead>Research</dochead>
      <bibl>
         <title>
            <p>Host predisposition by endogenous Transforming Growth Factor-&#946;1 overexpression promotes pulmonary fibrosis following bleomycin injury</p>
         </title>
         <aug>
            <au id="A1">
               <snm>Haider</snm>
               <fnm>Yussef</fnm>
               <insr iid="I1"/>
               <email>yhaider@manchester.ac.uk</email>
            </au>
            <au id="A2">
               <snm>Malizia</snm>
               <mi>P</mi>
               <fnm>Andrea</fnm>
               <insr iid="I2"/>
               <email>amalizia@mater.ie</email>
            </au>
            <au id="A3">
               <snm>Keating</snm>
               <mi>T</mi>
               <fnm>Dominic</fnm>
               <insr iid="I2"/>
               <email>dkeating@mater.ie</email>
            </au>
            <au id="A4">
               <snm>Birch</snm>
               <fnm>Mary</fnm>
               <insr iid="I1"/>
               <email>mbirch@manchester.ac.uk</email>
            </au>
            <au id="A5">
               <snm>Tomlinson</snm>
               <fnm>Annette</fnm>
               <insr iid="I1"/>
               <email>atomlinson@manchester.ac.uk</email>
            </au>
            <au id="A6">
               <snm>Martin</snm>
               <fnm>Gail</fnm>
               <insr iid="I1"/>
               <email>gmartin@manchester.ac.uk</email>
            </au>
            <au id="A7">
               <snm>Ferguson</snm>
               <mi>WJ</mi>
               <fnm>Mark</fnm>
               <insr iid="I1"/>
               <email>mark.w.ferguson@manchester.ac.uk</email>
            </au>
            <au id="A8">
               <snm>Doran</snm>
               <mi>P</mi>
               <fnm>Peter</fnm>
               <insr iid="I3"/>
               <email>pdoran@mater.ie</email>
            </au>
            <au id="A9" ca="yes">
               <snm>Egan</snm>
               <mi>J</mi>
               <fnm>Jim</fnm>
               <insr iid="I2"/>
               <insr iid="I4"/>
               <email>jegan@mater.ie</email>
            </au>
         </aug>
         <insg>
            <ins id="I1">
               <p>School of Biological Sciences, University of Manchester, Manchester, UK</p>
            </ins>
            <ins id="I2">
               <p>National Heart and Lung Transplant Program, Mater Misericordiae University Hospital, University College Dublin, Dublin</p>
            </ins>
            <ins id="I3">
               <p>Genome Resource Unit, Dublin Molecular Medicine Centre, Mater Misericordiae University Hospital, University College Dublin, Dublin, Ireland</p>
            </ins>
            <ins id="I4">
               <p>Advanced Lung Disease Programme, Mater Misericordiae University Hospital, University College Dublin, 44 Eccles Street, Dublin 7, Ireland</p>
            </ins>
         </insg>
         <source>Journal of Inflammation</source>
         <issn>1476-9255</issn>
         <pubdate>2007</pubdate>
         <volume>4</volume>
         <issue>1</issue>
         <fpage>18</fpage>
         <url>http://www.journal-inflammation.com/content/4/1/18</url>
         <xrefbib>
            <pubidlist>
               <pubid idtype="pmpid">17883846</pubid>
               <pubid idtype="doi">10.1186/1476-9255-4-18</pubid>
            </pubidlist>
         </xrefbib>
      </bibl>
      <history>
         <rec>
            <date>
               <day>22</day>
               <month>3</month>
               <year>2007</year>
            </date>
         </rec>
         <acc>
            <date>
               <day>20</day>
               <month>9</month>
               <year>2007</year>
            </date>
         </acc>
         <pub>
            <date>
               <day>20</day>
               <month>9</month>
               <year>2007</year>
            </date>
         </pub>
      </history>
      <cpyrt>
         <year>2007</year>
         <collab>Haider et al; licensee BioMed Central Ltd.</collab>
         <note>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<url>http://creativecommons.org/licenses/by/2.0</url>), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</note>
      </cpyrt>
      <abs>
         <sec>
            <st>
               <p>Abstract</p>
            </st>
            <sec>
               <st>
                  <p>Background</p>
               </st>
               <p>Idiopathic Pulmonary Fibrosis (IPF) is a progressive diffuse disease involving the lung parenchyma. Despite recent advances, the molecular mechanisms of the initiation and progression of this disease remain elusive. Previous studies have demonstrated TGF&#946;1 as a key effector cytokine in the development of lung fibrosis.</p>
            </sec>
            <sec>
               <st>
                  <p>Methods</p>
               </st>
               <p>In this study we have used a transgenic mouse based strategy to identify the effect of overexpression of this key effector mediator on the development of pulmonary fibrosis in response to exogenous injury. We bred two lines (line 25 and 18) of transgenic mice (Tr+) that overexpressed active TGF&#946;1. Three-month old transgenic and wild type mice were subsequently wounded with intraperitoneal bleomycin. Mice were sacrificed at 6 weeks post-bleomycin and their lungs analysed histologically and biochemically.</p>
            </sec>
            <sec>
               <st>
                  <p>Results</p>
               </st>
               <p>The severity of lung fibrosis was significantly greater in the Tr+ mice compared to the wild type mice. Using an oligonucleotide microarray based strategy we identified discrete patterns of gene expression contributing to TGF&#946;1 associated pulmonary fibrosis.</p>
            </sec>
            <sec>
               <st>
                  <p>Conclusion</p>
               </st>
               <p>This data emphasises the importance of a host predisposition in the form of endogenous TGF&#946;1, in the development of pulmonary fibrosis in response to an exogenous injury.</p>
            </sec>
         </sec>
      </abs>
   </fm>
   <bdy>
      <sec>
         <st>
            <p>Background</p>
         </st>
         <p>Idiopathic pulmonary fibrosis (IPF) is a progressive diffuse fibrotic process involving the lung parenchyma. It is a chronic, progressively debilitating and ultimately fatal disorder <abbrgrp><abbr bid="B1">1</abbr></abbrgrp>. Treatment options are limited and lung transplantation may be offered to a minority of patients.</p>
         <p>Recent studies have demonstrated that the outcome from disease was determined by the burden of collections of activated fibroblasts, fibroblastic foci, and not the extent of histological inflammation <abbrgrp><abbr bid="B2">2</abbr><abbr bid="B3">3</abbr><abbr bid="B4">4</abbr><abbr bid="B5">5</abbr></abbrgrp>.</p>
         <p>In IPF, exogenous mediators are thought to precipitate the lung injury, and in synergy with genetic factors contribute to the disease. These genetic factors are increasingly thought to play an important role, with familial patterning of IPF already described. Efforts to identify genetic loci linked to this disease have thus far been inconclusive <abbrgrp><abbr bid="B6">6</abbr></abbrgrp>. Extensive experimental evidence has identified, TGF&#946;1 as a central regulator of tissue fibrosis at multiple sites. Evidence from studies of fibrotic disorders, including renal and liver fibrosis, supports that TGF&#946;1 may play a novel role in fibrogenesis by promoting epithelial-mesenchymal transition (EMT) and activating fibroblasts to myofibroblasts <abbrgrp><abbr bid="B7">7</abbr><abbr bid="B8">8</abbr><abbr bid="B9">9</abbr></abbrgrp>. In mature epithelial cells, TGF&#946;1 can initiate EMT through activation of intracellular signalling molecules <abbrgrp><abbr bid="B10">10</abbr><abbr bid="B11">11</abbr></abbrgrp>. EMT contributes to the degeneration of epithelial structures and to the generation of fibroblasts in chronic fibrotic disorders <abbrgrp><abbr bid="B8">8</abbr><abbr bid="B12">12</abbr><abbr bid="B13">13</abbr></abbrgrp>. While targeted overproduction of TGF-&#946;1 is associated with an increase in pulmonary fibrosis, antagonising its effects prevent the fibrotic process <abbrgrp><abbr bid="B14">14</abbr></abbrgrp>. Reviewing potential candidate pathways that might offer novel therapeutic targets to treat IPF, Antoniou KM reported antibodies to TGF&#946;1 significantly reduced the cytokine experimental lung and kidney fibrosis and a receptor antagonist to this cytokine decreased accumulation of lung collagen induced by bleomycin <abbrgrp><abbr bid="B15">15</abbr></abbrgrp>. Several approaches to reduce TGF&#946;1 levels have also been evaluated in human tissue <it>in vivo</it>, showing downregulation of the fibrotic process by IFN-1b, which may occur both directly and indirectly by modification of the fibroblast response to reduced TGF&#946;1. <abbrgrp><abbr bid="B16">16</abbr><abbr bid="B17">17</abbr></abbrgrp>.</p>
         <p>In this study we evaluated TGF-&#946;1 gene overexpression in isolation and the impact of an exogenous injury in the setting of a host genetically predisposed by endogenous TGF-&#946;1 gene overexpression. Furthermore we sought to characterise the molecular mechanisms underpinning the development of the resultant fibrosis utilising gene array techniques.</p>
      </sec>
      <sec>
         <st>
            <p>Methods</p>
         </st>
         <sec>
            <st>
               <p>TGF&#946;1 transgenic mice</p>
            </st>
            <p>The mice were originally engineered by microinjection of a DNA fragment into the nuclei of one-cell mouse embryos. The DNA fragment containing an altered porcine TGF&#946;1 cDNA associated with an albumin promoter to ensure the preferential expression of the active form of TGF&#946;1 from the liver, with resultant high circulating levels <abbrgrp><abbr bid="B18">18</abbr></abbrgrp>. Mouse embryos were obtained from mating of F1 hybrid mice (C57BL6 &#215; CBA background). Two lines of mice (line 18 and line 25) were purchased (Nancy Sanderson, National Institute Of Health, Bethesda, MD, USA).</p>
            <p>The transgene was expressed in both sexes of the line 18 mice. The mice were bred by crossing a positive with a wild type animal. In the line 25 mice, only the male mice expressed the transgene. Therefore, the mice were bred by setting up a harem consisting of a positive male animal and three F1 females. Mice were housed under pathogen-free conditions and husbanded according to Home Office regulations.</p>
            <p>On day 0 mice were given intraperitoneal bleomycin (BLM) or phosphate buffer solution (PBS) in three divided doses (0.5 ml volume) over a course of 5 days. They were observed on a daily basis and sacrificed on day 42. Mice were divided into 6 groups (n = 8/group).</p>
         </sec>
         <sec>
            <st>
               <p>Characterisation of TGF&#946;1 Tr+ transgenic mice</p>
            </st>
            <p>Mouse-tail snips, measuring approximately 0.25 cm, were incubated with proteinase K overnight at 55&#176;C and DNA was extracted the following day using Phenol/Chloroform/Isoamylalcohol method followed by washing-step in 70% ethanol.</p>
            <p>TGF&#946;1 quantification was performed using a PAI-1/Luciferase assay (PAIL). PAIL assay is a quantitative bioassay based upon active TGF&#946;'s ability to stimulate the expression of Plasminogen Activator Inhibitor 1 (PAI-1) <abbrgrp><abbr bid="B19">19</abbr></abbrgrp>. The assay uses mink lung epithelial cells (MLEC's) (a kind gift from Dr Dan Rifkin, New York University Medical Center, New York), which have been stably transfected with a gene for Luciferase activity and its expression is regulated and promoted by a truncated PAI-1 promoter construct. TGF&#946;1 therefore regulates Luciferase activity via PAI-1 promoter. Luciferase activity in MLEC cell lysates was measured in a luminometer.</p>
         </sec>
         <sec>
            <st>
               <p>Histological analysis</p>
            </st>
            <p>Liver and lung tissue sections were stained with haematoxylin and eosin and Masson's trichrome, which determines collagen deposition and localization. Lung fibrosis was graded histologically by an established scoring system <abbrgrp><abbr bid="B20">20</abbr></abbrgrp>.</p>
            <p>Immunohistochemical analysis was performed as previously described <abbrgrp><abbr bid="B21">21</abbr></abbrgrp>. In brief, paraffin sections were stained with rabbit anti-reticulin (Sigma, UK), rabbit anti-TGF&#946;1 (Santa Cruz, CA, USA) and its receptors (TGF&#946;1R1, TGF&#946;1R2, TGF&#946;1R3) (Santa Cruz, CA, USA) (1:100). Antibody binding was visualized using a biotinylated secondary antibody, avidine conjugated peroxidase (ABC method; Vector Laboratories) and 3,3' diaminobenzidine tetrachloride (DAB) as a substrate and hematoxylin as counterstain.</p>
         </sec>
         <sec>
            <st>
               <p>Collagen assay</p>
            </st>
            <p>For collagen determination we employed a hydroxyproline assay technique. Briefly after death, lungs were removed and weighed. 6 M hydrochloric acid was added to each sample, then sealed and placed in an oven overnight at 110&#176;C. Excess acid was removed by evaporation and hydrolyzed samples were dissolved in 1 ml of PBS. The samples were aliquoted adding Chloramine T reagent equally to each sample. After 20 minutes of mixing, 1 ml of p-DAB reagent (p-dimethyl-amino-benzaldehyde) was added and the mixture incubated at 60&#176;C. The colour signals were measured in a spectrophotometer at 550 nm, and compared to a standard curve.</p>
         </sec>
         <sec>
            <st>
               <p>Microarray analysis</p>
            </st>
            <p>RNA isolation, cDNA synthesis, <it>in vitro </it>transcription and microarray analysis were performed as previously reported <abbrgrp><abbr bid="B22">22</abbr></abbrgrp>. Arrays were scanned with a confocal scanner (Affymetrix). All <it>in vitro </it>time points were microarrayed in duplicate.</p>
            <p>Image files were obtained through Affymetrix GeneChip software (MAS5). Subsequently robust multichip analysis (RMA) was performed <abbrgrp><abbr bid="B23">23</abbr><abbr bid="B24">24</abbr></abbrgrp>. Expression data was further probed to identify those genes whose expression is altered <abbrgrp><abbr bid="B25">25</abbr></abbrgrp>. Expression data following injury was compared to control and a signal log ratio of 0.6 or greater (equivalent to a fold change in expression of 1.5 or greater) was taken to identify significant differential regulation. Using normalised RMA values, Unsupervised Average Linkage Hierarchical Cluster Analysis was performed <abbrgrp><abbr bid="B26">26</abbr></abbrgrp>. Functional annotation of differentially expressed genes was curated via the publicly available Onto-Compare and Gene-Ontology (GO) databases <abbrgrp><abbr bid="B27">27</abbr></abbrgrp>.</p>
         </sec>
      </sec>
      <sec>
         <st>
            <p>Results and discussion</p>
         </st>
         <sec>
            <st>
               <p>TGF-&#946;1 transgenic mice develop severe liver fibrosis</p>
            </st>
            <p>Following breeding, TGF&#946;1 expression was confirmed by PCR amplification in Tr+ TGF&#946;1 transgenic mice (Figure <figr fid="F1">1a</figr>). To determine the effect of the TGF&#946;1 transgene in these mice, serum levels of both total and active TGF&#946;1 were determined. The Tr+ transgenic mice had higher levels of total TGF&#946;1 (2.2 ng/ml, SEM 0.23) compared to Tr- wild types (1.58 ng/ml, SEM 0.39), though this comparison did not reach statistical significance (p = 0.16) (Figure <figr fid="F1">1b</figr>); while, Tr+ transgenic mice had higher plasma levels of active TGF&#946;1 (mean 98.1 pg/ml, SEM 16.1) compared to Tr- wild types (mean 9.37, SEM 6.6) (p &lt; 0.01). Individually, the line 18 mice had a similar level of active TGF&#946;1 (mean 87 pg/ml, SEM 19.2) to the line 25 mice (105.5 pg/ml, SEM 24.5) (Figure <figr fid="F1">1c</figr>).</p>
            <fig id="F1">
               <title>
                  <p>Figure 1</p>
               </title>
               <caption>
                  <p>Characterisation of TGF&#946;1 transgenic mice</p>
               </caption>
               <text>
                  <p><b>Characterisation of TGF&#946;1 transgenic mice</b>. A. Expression of the transgene in wild type and both line 18 and line 25 transgenic mice was assessed by PCR using TGF&#946;1 sequence specific primers. This figure is a representative agarose gel post amplification indicating expression of the TGF&#946;1 transgene in both line 18 and line 25 Tr+ transgenic mice (<it>Lanes 1 and 2). Lanes 3 and 4 </it>show absence of transgene in wild type mice. Figure B and C show PAIL lumineriferase assay results. To determine the effect of the transgene on circulating TGF&#946;1, both total (B) and active (C) TGF&#946;1 concentrations in sera was determined.</p>
               </text>
               <graphic file="1476-9255-4-18-1"/>
            </fig>
            <p>Having demonstrated altered DNA and protein expression in TGF&#946;1-transgenic mice we sought to determine the effect of TGF&#946;1 overexpression on tissue phenotype.</p>
            <p>Tr+ transgenic mouse livers were histologically abnormal as early as 1 month, though the most marked changes were seen from 3 months onwards. This consisted of extensive cellular degeneration, vacuolisation, fibrosis and architectural disruption (Figure <figr fid="F2">2a</figr>), compared to Tr- wild type mouse liver (Figure <figr fid="F2">2b</figr>). Staining for the pre-collagen, reticulin signalling was higher in transgenic mice tissue than wild type, confirming the presence of ongoing tissue fibrosis (Figure <figr fid="F2">2c&#8211;d</figr>). Tissue changes were most pronounced in the line 25 mice, but also present in line 18 mice, while wild type mice had normal liver architecture and normal reticulin levels.</p>
            <fig id="F2">
               <title>
                  <p>Figure 2</p>
               </title>
               <caption>
                  <p>TGF&#946;1 overexpression induces severe liver fibrosis</p>
               </caption>
               <text>
                  <p><b>TGF&#946;1 overexpression induces severe liver fibrosis</b>. A. Shown are representative micrographs following haematoxylin/eosin staining indicating severe liver fibrosis in TGF&#946;1 transgene expressing mice. B shows normal Tr- wild type mice liver tissue stained by haematoxylin/eosin. C. The deposition of the pro-collagen, reticulin, was also determined using specific monoclonal antibody anty-reticulin by immunohistochemistry in Tr- WT mice liver tissue sections. D. Whilst low abundance staining is seen in wild type liver, expression of reticulin is dramatically enhanced in the Tr+ TGF&#946;1 transgenic mice.</p>
               </text>
               <graphic file="1476-9255-4-18-2"/>
            </fig>
            <p>These data demonstrate overexpression of TGF&#946;1 in Tr+ transgenic mice and detail the alterations in phenotype, providing a model for the assessment of the contribution of this important effector cytokine to the fibrotic milieu <it>in vivo</it>.</p>
            <p>Overexpression of TGF&#946;1 in the liver leads to a severe liver fibrosis. Fibrotic liver phenotype presented at 1 month with the injury being most severe from 3 months onwards. Of note was the finding of enhanced reticulin deposition in the fibrotic tissue versus Tr- wild type mice. These data provide evidence that overexpression of TGF&#946;1 in mouse liver promotes de novo fibrosis, even in the absence of other pro-fibrotic stimuli.</p>
         </sec>
         <sec>
            <st>
               <p>Overexpression of TGF&#946;1 does not cause de novo lung fibrosis</p>
            </st>
            <p>Having demonstrated the molecular effect of TGF&#946;1 overexpression and its effect on mouse liver we examined the impact of Tr+ TGF&#946;1 transgenic expression on mouse lung. Of note was the finding that transgenic mouse lungs (Figure <figr fid="F3">3a</figr>) showed no evidence of <it>de novo </it>fibrosis at any time point studied.</p>
            <fig id="F3">
               <title>
                  <p>Figure 3</p>
               </title>
               <caption>
                  <p>Absence of lung fibrosis in TGF&#946;1 overexpressing mice</p>
               </caption>
               <text>
                  <p><b>Absence of lung fibrosis in TGF&#946;1 overexpressing mice</b>. Figure A shows haematoxylin and eosin staining of Tr+ TGF&#946;1 transgenic lung tissue. Of note was the absence of fibrosis in transgenic mice. To determine the molecular events underpinning this process we determined the expression of TGF&#946;1 (B), Type I receptor for TGF&#946;1 (C) and the TGF&#946;1 Type II receptor (D) by immunohistochemistry. As can be seen TGF&#946;1 and its receptors are present in abundance in lung tissue from these mice, indicating a normal TGF&#946;1 signalling cascade in Tr+ pulmonary tissue.</p>
               </text>
               <graphic file="1476-9255-4-18-3"/>
            </fig>
            <p>To determine the putative mechanism underpinning this tissue specific finding we characterised the expression of TGF&#946;1 in transgenic mouse lung. Figure <figr fid="F3">3b</figr> shows staining for active TGF&#946;1 in lung tissue, providing evidence that whilst TGF&#946;1 is present in the lung it does not produce a fibrotic response. Having determined the presence of active TGF&#946;1 in these lungs, expression of TGF&#946;1 receptors was investigated. Of note was the finding that, Tr+ transgenic mouse lung was found to contain an abundance of both Type I (Figure <figr fid="F3">3c</figr>) and type II (Figure <figr fid="F3">3d</figr>) TGF&#946;1 receptors.</p>
            <p>These data demonstrate that <it>de novo </it>tissue fibrosis in response to TGF&#946;1 overexpression is tissue specific. In the setting of the lung, active TGF&#946;1 does not produce a fibrotic phenotype despite an abundance of both type I and type II receptors. The data presented herein lend weight to the hypothesis that TGF&#946;1 contributes to lung fibrosis <it>in vivo </it>through the interplay with other factors, and is not sufficient, in itself to drive lung fibrosis.</p>
         </sec>
         <sec>
            <st>
               <p>Oligonucleotide microarray analysis identifies distinct patterns of gene expression underpinning lung injury</p>
            </st>
            <p>The data generated in the histological studies identified that TGF&#946;1 overexpression is insufficient to establish pulmonary fibrosis. However we determined the effect of a second insult with bleomycin on TGF&#946;1- and WT-transgenic mice.</p>
            <p>To determine the molecular events subserving the TGF&#946;1 mediated exacerbation of lung fibrosis we utilised an oligonucleotide microarray based strategy to identify altered key transcripts. Specifically, we probed the molecular contribution to the repetitive injury, namely the expression changes induced by TGF&#946;1 overexpression and the expression changes that result from bleomycin exposure in these Tr+ transgenic mice. Affymetrix Mouse Genome 430_2 microarrays were used to determine gene expression levels in lung tissue from a) untreated Tr+ TGF&#946;1 transgenic mice b) Tr- wild type mice treated with bleomycin and c) bleomycin treated Tr+ TGF&#946;1 transgenic mice, to identify the overall pattern of gene expression in this experiment. Significant changes in gene expression were associated with these tissue cohorts (-0.6 &lt; SLR > 0.6, and p &lt; 0.05) (Figure <figr fid="F4">4a</figr>). Distinct patterns of coordinate gene expression were observed throughout the exposures, with substantial transcriptomic effects in terms of both up and downregulation of gene expression separating the sample groups.</p>
            <fig id="F4">
               <title>
                  <p>Figure 4</p>
               </title>
               <caption>
                  <p>Oligonucleotide microarray analysis reveals coordinate patterns of gene expression in response to bleomycin lung injury</p>
               </caption>
               <text>
                  <p><b>Oligonucleotide microarray analysis reveals coordinate patterns of gene expression in response to bleomycin lung injury</b>. A. Gene expression in Bleomycin treated Tr- Wild Type (WT BL, WTB1, WTB2) and Tr+ TGF&#946;1 trasgenic mice (TGF BL, TGFBL1, TGFBL2), and untreated Tr+ TGF&#946;1 trasgenic mice (TGF, TGF1, TGF2) was assessed using Affymetrix Mouse Genome 430_2 oligonucleotide microarrays in duplicate (data are reported in the cluster dendogram as single analysis and average: cel1, cel2 and average, respectively). Average and actual expression values for all significantly dysregulated genes were used as input in unsupervised hierarchical cluster visualization. Shown is a representative cluster dendrograms indicating separation of the conditions based on gene expression profiles, highlighting an high homology (based on the t-score) of both bleomycin treated group, respect to untreated Tr+ transgenic mice group. Figure B summarises the total number of genes found to be significantly altered in each comparison (Tr+ and bleomycin vs Tr- WT and bleomycin; Tr+ and bleomycin vs Tr+; Tr+ vs Tr- WT and bleomycin). A high number of altered genes were found to be upregulated and dowwnregulated in bleomycin treated Tr+ vs Tr+ group. C. To further annotate the pulmonary fibrosis associated transcriptome, significantly perturbed genes from bleomycin treated Tr+ vs Tr+ group were used as input in searches of the Gene Ontology database to identify the biological function of the altered genes.</p>
               </text>
               <graphic file="1476-9255-4-18-4"/>
            </fig>
            <p>Of the 45,101 gene sequences represented on the Affymetrix Mouse Genome 430_2 oligonucleotide microarray, 6.2% (2812 genes) were found to be significantly altered in all three groups. Exposure of Tr+ TGF&#946;1 transgenic mice to bleomycin elicited a major gene expression response with a total of 3.9% significantly altered transcripts (1724 genes) in compare to untreated Tr+ TGF&#946;1 transgenic mice. To probe molecular basis of TGF&#946;1 exacerbation of lung injury the expression profiles of both bleomycin-treated WT and TGF&#946;1 transgenic mice were compared, showing 640 significant gene expression changes between these groups (1.4% of the transcripts represented on the microarray) (Figure <figr fid="F4">4b</figr>).</p>
            <p>To further annotate the transcriptomic differences between the study groups' ontological classification of molecular function was investigated by using Gene Ontology database (Figure <figr fid="F4">4c</figr>). By using Gene Ontology database, Bleomycin TR+ vs TR+ altered transcripts were classified and grouped in functional families in correlation with their significant role in fibrosis development. Altered fibrosis-associated genes, which drive angiogenesis, inflammatory response, immune response and apoptosis, in response to bleomycin in TR+ mice were found dysregulated, as also previously reported <abbrgrp><abbr bid="B28">28</abbr><abbr bid="B29">29</abbr><abbr bid="B30">30</abbr></abbrgrp>. In addition, we found a large number of significantly altered genes that function in the regulation of cellular morphogenesis, development and gene transcription. Bleomycin-exposed TR+ TGF&#946;1 transgenic mice show overall altered gene expression profile which correlate with cellular morphogenesis and gene transcription, enhanced cellular functions which trigger fibrosis development.</p>
            <p>Tables <tblr tid="T1">1</tblr> and <tblr tid="T2">2</tblr> highlight the genes whose mRNA levels were most strikingly altered in bleomycin injured and Tr+ TGF&#946;1 transgenic mice.</p>
            <tbl id="T1">
               <title>
                  <p>Table 1</p>
               </title>
               <caption>
                  <p>Genes undergoing most significant upregulation in Bleomycin-exposed Tr+ TGF&#946;1 transgenic mice in compare to Tr+ untreated mice.</p>
               </caption>
               <tblbdy cols="3">
                  <r>
                     <c ca="center">
                        <p><b>Accession No</b>.</p>
                     </c>
                     <c ca="center">
                        <p>
                           <b>Gene name</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <b>SLRs</b>
                        </p>
                     </c>
                  </r>
                  <r>
                     <c cspan="3">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>M12573.1</p>
                     </c>
                     <c ca="center">
                        <p>heat shock protein, 70 kDa 1</p>
                     </c>
                     <c ca="center">
                        <p>0.586101</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BB746075</p>
                     </c>
                     <c ca="center">
                        <p>dipeptidyl peptidase 7</p>
                     </c>
                     <c ca="center">
                        <p>0.586311</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>X67128.1</p>
                     </c>
                     <c ca="center">
                        <p>rearranged T-cell receptor beta chain</p>
                     </c>
                     <c ca="center">
                        <p>0.586724</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AF061744.1</p>
                     </c>
                     <c ca="center">
                        <p>FYN binding protein</p>
                     </c>
                     <c ca="center">
                        <p>0.588032</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_010724.1</p>
                     </c>
                     <c ca="center">
                        <p>proteosome (prosome, macropain) subunit, beta type 8</p>
                     </c>
                     <c ca="center">
                        <p>0.590169</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>L42293.1</p>
                     </c>
                     <c ca="center">
                        <p>O-acyltransferase 1 (Soat1)</p>
                     </c>
                     <c ca="center">
                        <p>0.591774</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_008979.1</p>
                     </c>
                     <c ca="center">
                        <p>protein tyrosine phosphatase, non-receptor type 8</p>
                     </c>
                     <c ca="center">
                        <p>0.592489</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>L78253.1</p>
                     </c>
                     <c ca="center">
                        <p>killer cell lectin-like receptor, subfamily A, member 8</p>
                     </c>
                     <c ca="center">
                        <p>0.597584</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BB206460</p>
                     </c>
                     <c ca="center">
                        <p>phosphatidylinositol membrane-associated</p>
                     </c>
                     <c ca="center">
                        <p>0.599792</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_009099.1</p>
                     </c>
                     <c ca="center">
                        <p>tripartite motif protein 30</p>
                     </c>
                     <c ca="center">
                        <p>0.600294</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_007655.1</p>
                     </c>
                     <c ca="center">
                        <p>immunoglobulin-associated alpha (Iga)</p>
                     </c>
                     <c ca="center">
                        <p>0.600366</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>U29539.1</p>
                     </c>
                     <c ca="center">
                        <p>retinoic acid-inducible E3 protein</p>
                     </c>
                     <c ca="center">
                        <p>0.602024</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BF301241</p>
                     </c>
                     <c ca="center">
                        <p>immunoglobulin kappa chain variable region</p>
                     </c>
                     <c ca="center">
                        <p>0.602451</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>M34563.1</p>
                     </c>
                     <c ca="center">
                        <p>CD28 antigen (Cd28)</p>
                     </c>
                     <c ca="center">
                        <p>0.602497</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AW322280</p>
                     </c>
                     <c ca="center">
                        <p>keratin complex 2, basic, gene 8</p>
                     </c>
                     <c ca="center">
                        <p>0.60367</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_009049.1</p>
                     </c>
                     <c ca="center">
                        <p>endocrine-specific protein 18</p>
                     </c>
                     <c ca="center">
                        <p>0.604619</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BF301241</p>
                     </c>
                     <c ca="center">
                        <p>immunoglobulin kappa chain variable region</p>
                     </c>
                     <c ca="center">
                        <p>0.606074</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_011487.1</p>
                     </c>
                     <c ca="center">
                        <p>signal transducer and activator of transcription 4</p>
                     </c>
                     <c ca="center">
                        <p>0.606996</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BC002043.1</p>
                     </c>
                     <c ca="center">
                        <p>cyclin-dependent kinase inhibitor 1A</p>
                     </c>
                     <c ca="center">
                        <p>0.608647</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>M33266.1</p>
                     </c>
                     <c ca="center">
                        <p>small inducible cytokine B subfamily (Cys-X-Cys)</p>
                     </c>
                     <c ca="center">
                        <p>0.61223</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AW227993</p>
                     </c>
                     <c ca="center">
                        <p>complement component 1, q subcomponent, beta polypeptide</p>
                     </c>
                     <c ca="center">
                        <p>0.612379</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>L05631.1</p>
                     </c>
                     <c ca="center">
                        <p>IL2-inducible T-cell kinase (Itk)</p>
                     </c>
                     <c ca="center">
                        <p>0.612786</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_009952.1</p>
                     </c>
                     <c ca="center">
                        <p>cAMP response element binding protein (Creb1)</p>
                     </c>
                     <c ca="center">
                        <p>0.613665</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AF274046.1</p>
                     </c>
                     <c ca="center">
                        <p>nuclear protein 95 (Np95)</p>
                     </c>
                     <c ca="center">
                        <p>0.615783</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_010234.1</p>
                     </c>
                     <c ca="center">
                        <p>FBJ osteosarcoma oncogene</p>
                     </c>
                     <c ca="center">
                        <p>0.617241</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_008328.1</p>
                     </c>
                     <c ca="center">
                        <p>interferon activated gene 203</p>
                     </c>
                     <c ca="center">
                        <p>0.617767</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_011580.1</p>
                     </c>
                     <c ca="center">
                        <p>thrombospondin 1</p>
                     </c>
                     <c ca="center">
                        <p>0.621648</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>M26071.1</p>
                     </c>
                     <c ca="center">
                        <p>coagulation factor III</p>
                     </c>
                     <c ca="center">
                        <p>0.622067</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AV075715</p>
                     </c>
                     <c ca="center">
                        <p>Clusterin</p>
                     </c>
                     <c ca="center">
                        <p>0.623468</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BM124741</p>
                     </c>
                     <c ca="center">
                        <p>heat shock protein 25 kDa 2</p>
                     </c>
                     <c ca="center">
                        <p>0.625063</p>
                     </c>
                  </r>
               </tblbdy>
            </tbl>
            <tbl id="T2">
               <title>
                  <p>Table 2</p>
               </title>
               <caption>
                  <p>Genes undergoing most significant downregulation in Bleomycin-exposed Tr+ TGF&#946;1 transgenic mice in compare to Tr+ untreated mice.</p>
               </caption>
               <tblbdy cols="3">
                  <r>
                     <c ca="center">
                        <p><b>Accession No</b>.</p>
                     </c>
                     <c ca="center">
                        <p>
                           <b>Gene name</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <b>SLRs</b>
                        </p>
                     </c>
                  </r>
                  <r>
                     <c cspan="3">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_033525.1</p>
                     </c>
                     <c ca="center">
                        <p>nephronectin</p>
                     </c>
                     <c ca="center">
                        <p>-3.104277</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_008508.1</p>
                     </c>
                     <c ca="center">
                        <p>loricrin</p>
                     </c>
                     <c ca="center">
                        <p>-2.9579485</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_008218.1</p>
                     </c>
                     <c ca="center">
                        <p>hemoglobin alpha, adult chain 1</p>
                     </c>
                     <c ca="center">
                        <p>-2.5698385</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AF071431.1</p>
                     </c>
                     <c ca="center">
                        <p>beta globin</p>
                     </c>
                     <c ca="center">
                        <p>-2.4558515</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_009868.1</p>
                     </c>
                     <c ca="center">
                        <p>cadherin 5</p>
                     </c>
                     <c ca="center">
                        <p>-2.383406</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_009502.1</p>
                     </c>
                     <c ca="center">
                        <p>vinculin</p>
                     </c>
                     <c ca="center">
                        <p>-2.2180055</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AB015595.1</p>
                     </c>
                     <c ca="center">
                        <p>calcitonin receptor-like receptor precursor</p>
                     </c>
                     <c ca="center">
                        <p>-2.217319</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BB623587</p>
                     </c>
                     <c ca="center">
                        <p>integrin alpha8</p>
                     </c>
                     <c ca="center">
                        <p>-2.155636</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_007925.1</p>
                     </c>
                     <c ca="center">
                        <p>elastin</p>
                     </c>
                     <c ca="center">
                        <p>-2.1294445</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>M34962.1</p>
                     </c>
                     <c ca="center">
                        <p>histocompatibility 2, L region</p>
                     </c>
                     <c ca="center">
                        <p>-2.0658385</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AW550625</p>
                     </c>
                     <c ca="center">
                        <p>procollagen, type III, alpha 1</p>
                     </c>
                     <c ca="center">
                        <p>-2.056252</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>X14480.1</p>
                     </c>
                     <c ca="center">
                        <p>nidogen 1</p>
                     </c>
                     <c ca="center">
                        <p>-2.027124</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AK013851.1</p>
                     </c>
                     <c ca="center">
                        <p>G protein gamma 3 linked gene</p>
                     </c>
                     <c ca="center">
                        <p>-1.928728</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BG060909</p>
                     </c>
                     <c ca="center">
                        <p>stearoyl-Coenzyme A desaturase 2</p>
                     </c>
                     <c ca="center">
                        <p>-1.922733</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BC004850.1</p>
                     </c>
                     <c ca="center">
                        <p>twisted gastrulation protein</p>
                     </c>
                     <c ca="center">
                        <p>-1.854459</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BE573195</p>
                     </c>
                     <c ca="center">
                        <p>epithelial membrane protein 2</p>
                     </c>
                     <c ca="center">
                        <p>-1.848788</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AI324124</p>
                     </c>
                     <c ca="center">
                        <p>synuclein, alpha</p>
                     </c>
                     <c ca="center">
                        <p>-1.80537</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_008475.1</p>
                     </c>
                     <c ca="center">
                        <p>keratin complex 2, basic, gene 4</p>
                     </c>
                     <c ca="center">
                        <p>-1.7794</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AB041350.1</p>
                     </c>
                     <c ca="center">
                        <p>type IV collagen alpha 5 chain</p>
                     </c>
                     <c ca="center">
                        <p>-1.756065</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BM211336</p>
                     </c>
                     <c ca="center">
                        <p>ferrochelatase</p>
                     </c>
                     <c ca="center">
                        <p>-1.745825</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AK013376.1</p>
                     </c>
                     <c ca="center">
                        <p>amyloid beta (A4) precursor-like</p>
                     </c>
                     <c ca="center">
                        <p>-1.725242</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_011594.1</p>
                     </c>
                     <c ca="center">
                        <p>tissue inhibitor of metalloproteinase 2</p>
                     </c>
                     <c ca="center">
                        <p>-1.705896</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AF252873.1</p>
                     </c>
                     <c ca="center">
                        <p>CXC chemokine MIP-2gamma precursor</p>
                     </c>
                     <c ca="center">
                        <p>-1.7039455</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AY075134.1</p>
                     </c>
                     <c ca="center">
                        <p>T-box 4</p>
                     </c>
                     <c ca="center">
                        <p>-1.7018585</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_009100.1</p>
                     </c>
                     <c ca="center">
                        <p>repetin</p>
                     </c>
                     <c ca="center">
                        <p>-1.683903</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>NM_021099.2</p>
                     </c>
                     <c ca="center">
                        <p>kit oncogene</p>
                     </c>
                     <c ca="center">
                        <p>-1.642024</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>BM239368</p>
                     </c>
                     <c ca="center">
                        <p>tumor differentially expressed 1</p>
                     </c>
                     <c ca="center">
                        <p>-1.6415555</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>U08020.1</p>
                     </c>
                     <c ca="center">
                        <p>collagen pro-alpha-1 type I chain m</p>
                     </c>
                     <c ca="center">
                        <p>-1.6209215</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AF128892.1</p>
                     </c>
                     <c ca="center">
                        <p>protein kinase Piccolo</p>
                     </c>
                     <c ca="center">
                        <p>-1.615523</p>
                     </c>
                  </r>
                  <r>
                     <c ca="center">
                        <p>AF017989.1</p>
                     </c>
                     <c ca="center">
                        <p>secreted frizzled-related seq. protein 2</p>
                     </c>
                     <c ca="center">
                        <p>-1.5890315</p>
                     </c>
                  </r>
               </tblbdy>
            </tbl>
            <p>Table <tblr tid="T1">1</tblr> indicates a large number of altered genes, which are largely recognized as mediators of immunological function. Further annotation of these upregulated genes identified a large number of genes involved in cytokine signalling. Further, the transcripts whose expression was found to be altered in response to bleomycin exposure included a large number of extracellular matrix and matrix regulation associated genes, key effectors molecules in the development of tissue fibrosis.</p>
         </sec>
         <sec>
            <st>
               <p>TGF&#946;1 overexpression primes mouse lung for fibrotic injury following bleomycin exposure</p>
            </st>
            <p>Having demonstrated that overexpression of TGF&#946;1, whilst initiating severe fibrosis in mouse liver, does not cause <it>de novo </it>lung fibrosis; we determined the effect of escalating doses of bleomycin on TGF&#946;1 and WT transgenic mice.</p>
            <p>Exposure to 1500 IU of bleomycin resulted in 5 mice (Tr+ line 25) developing lung fibrosis compared to only 2 in the Tr- wild type group. 4500 IU of bleomycin showed fibrosis in all 8 mice of the Tr+ line 25, compared to 6 mice in the Tr+ line 18 group and 5 mice in the Tr- wild type group. These data determine the dose response nature of lung injury following exposure to bleomycin.</p>
            <p>Lung fibrosis induced by 4500 IU bleomycin in the Tr- wild type group was a mild patchy lung injury (Figure <figr fid="F5">5a</figr>). Tr+ transgenic mice, following exposure to comparable and smaller doses of bleomycin demonstrated marked lung injury hallmarked by grossly thickened alveolar walls, inflammation, fibroblast proliferation and collagen deposition in a peribronchial, interstitial and sub pleural distribution (Figure <figr fid="F5">5b</figr>).</p>
            <fig id="F5">
               <title>
                  <p>Figure 5</p>
               </title>
               <caption>
                  <p>TGF&#946;1 overexpression induces pronounced fibrotic response following bleomycin exposure</p>
               </caption>
               <text>
                  <p><b>TGF&#946;1 overexpression induces pronounced fibrotic response following bleomycin exposure</b>. Tissue fibrosis was assessed in both Tr- wild type (A) and Tr+ transgenic (B) mice lung following exposure to 4500 IU bleomycin, as previously described. Shown are representative micrographs following haematoxylin/eosin staining of lung tissue, demonstrating fibrotic response in bleomycin treated wild type mouse lung that is significantly more severe in tissue from Tr+ TGF&#946;1 transgenic mice, suggesting that overexpression of the TGF&#946;1 transgene exacerbates subsequent lung injury. C. To quantify this fibrotic effect, fibrosis scores were determined as described. The graph shows enhanced fibrosis scores in Tr+ TGF&#946;1 transgenic mice versus their Tr- wild type counterparts in response to bleomycin exposure.</p>
               </text>
               <graphic file="1476-9255-4-18-5"/>
            </fig>
            <p>To validate these tissue observations the fibrosis score in bleomycin treated mice was determined as described. The Tr+ transgenic-bleomycin group had greater fibrosis scores (mean 1.88, SEM 0.27) than the Tr- wild type-bleomycin group (mean 0.875, SEM 0.295) (p &lt; 0.05). Tr+ line 25-bleomycin group had the highest mean score (mean 2.0, SEM 0.32) (p &lt; 0.05) (Figure <figr fid="F5">5c</figr>) while the Tr+ line 18-bleomycin group also had a score of 1.75 (SEM 0.45). The PBS vehicle Tr- wild type group had scores of 0 (n = 8). These data further demonstrate the exacerbation of bleomycin elicited lung injury in mice overexpressing TGF&#946;1.</p>
            <p>Finally, we determined the tissue distribution of TGF&#946;1 in lung tissue from both Tr- wild type and Tr+ transgenic mice following exposure to bleomycin. Immunostaining for TGF&#946;1 demonstrated marked expression of TGF&#946;1 in both wild type (Figure <figr fid="F6">6a</figr>) and Tr+ transgenic (Figure <figr fid="F6">6b</figr>) mice following bleomycin exposure. Of note is the particularly strong expression in TGF&#946;1 transgenic mice, suggesting that bleomycin exposure elicits a more pronounced TGF&#946;1 response in Tr+ transgenic versus wild type mouse lung.</p>
            <fig id="F6">
               <title>
                  <p>Figure 6</p>
               </title>
               <caption>
                  <p>Enhanced TGF&#946;1 immunostaining and collagen production in bleomycin treated Tr+ TGF&#946;1 transgenic mice</p>
               </caption>
               <text>
                  <p><b>Enhanced TGF&#946;1 immunostaining and collagen production in bleomycin treated Tr+ TGF&#946;1 transgenic mice</b>. A, B. To determine the role of TGF&#946;1 in the induction of lung fibrosis in mice treated with bleomycin, immunostaining for active TGF&#946;1 was performed as previously described. Shown are representative micrographs following immunostaining for TGF&#946;1 in the lung of bleomycin treated, Tr- wild type (A) and Tr+ TGF&#946;1 transgenic (B) mice. Expression of TGF&#946;1 is present in both tissue specimens but is substantially enhanced in the Tr+ TGF&#946;1 transgenic mice. C. Total collagen was determined by hydroxyproline assay as previously described. Collagen production was significantly enhanced in all bleomycin-wounded mice versus control PBS exposed, and in particular collagen deposition has been found higher in Tr+ TGF&#946;1 transgenic mice than in Tr- Wild Type ones. BLM, Bleomycin.</p>
               </text>
               <graphic file="1476-9255-4-18-6"/>
            </fig>
         </sec>
         <sec>
            <st>
               <p>Bleomycin induced pulmonary fibrosis in Tr+ mice enhances collagen deposition</p>
            </st>
            <p>Having determined the fibrotic response induced by exposure to 4500 IU of bleomycin in both wild type and TGF&#946;1 transgenic mouse lung tissue we further investigated collagen production in lung tissue following exposure to bleomycin.</p>
            <p><it>De novo </it>collagen production was assessed using hydroxyproline assay. The lung hydroxyproline content was higher in the Tr+ transgenic-bleomycin group (mean 3.3 &#956;g/mg, SEM 0.11) than in the Tr- wild type-bleomycin group (mean 2.4 &#956;g/mg, SEM 0.33)(p &lt; 0.05) or the unwounded PBS group (mean 1.76 &#956;g/mg, SEM 0.16) (Figure <figr fid="F6">6</figr>).</p>
            <p>In summary, the fibrotic response in Tr+ transgenic mice is dominated firstly by immune mediators reacting to bleomycin exposure and causing lung injury and secondly by genes (TGF&#946;1) contributing to the deposition of extracellular matrix. These data lend further weight to the hypothesis that pulmonary fibrosis is a result of combined injury from both endogenous and exogenous mediators and provides important evidence for the interplay of these factors in the development of tissue fibrosis. Further analysis of these transcriptomic alterations will reveal the exact mechanism of the synergistic lung injury induced by TGF&#946;1 overexpression and bleomycin injury.</p>
         </sec>
      </sec>
      <sec>
         <st>
            <p>Conclusion</p>
         </st>
         <p>In this study we have utilized transgenic mice to simulate TGF&#946;1-related genetic predisposition to external stimuli, rather than a tissue specific TGF&#946;1 transgenic model. We have used a combination of gene overexpression and exposure to an exogenous agent to further define the complex nature of the initiation and progression of pulmonary fibrosis. In common with most other complex disorders, this data suggests that one single factor is insufficient to promote pulmonary fibrosis in isolation.</p>
         <p>Increasing evidence has shown that it is the interplay of myriad biological factors that promote the development of this disease. TGF&#946;1 has been explored in depth in the context of IPF due to its well-described pro-fibrotic injury. In this study overexpression of the gene encoding TGF&#946;1 in mice was shown to initiate severe liver fibrosis as evidenced by histology. However, of note was the finding that overexpression of the gene did not result in a <it>de novo </it>fibrotic response in mouse lung. To probe the mechanism at work in the lung we determined and showed that the key components of TGF&#946;1 signalling were present in the lung, despite the lack of fibrotic responses. This data emphasises that a genetic predisposition in isolation is insufficient to promote pulmonary fibrosis.</p>
         <p>Despite several limitations <abbrgrp><abbr bid="B31">31</abbr></abbrgrp>, bleomycin-induced fibrosis in an animal model is the most common method for studying fibrosis. Some bleomycin-based model in mice replicate human pathologic features of IPF, including fibroproliferation within the lung parenchyma, and hence pathologic mechanisms discerned in the mouse are worthy of consideration, specifically it is recognized as a source of epithelial cell injury which is considered central to IPF in the human setting. The importance of TGF&#946;1 to the development of lung fibrosis, was however, demonstrated by the lung response to bleomycin. As compared with their wild type treated counterparts, the transgenic mice showed a much more severe fibrosis, as evidenced by both histological analysis and deposition of collagen in the lung. These data raise the possibility that overexpression of the TGF&#946;1 gene, in the germline, results in a subsequent inappropriate response to bleomycin exposure. This finding may explain a number of key features of the disease including the susceptibility of some patients to more severe progression and the multifactorial nature of the pathology. Defects in the TGF&#946;1 gene resulting in increased TGF&#946;1 production, or locally induced TGF&#946;1 increases may only be sufficient to cause a fibrotic injury when acting in concert with other factors, thus reinforcing the hypothesis that IPF development is due to the interplay of a number of factors.</p>
         <p>We defined the fibrotic response in the transgenic animal population following epithelial cell injury, and characterised the transcriptomic changes. The data showed distinct patterns of gene expression driving the tissue response to injury.</p>
         <p>Chambers <it>et al</it>. have profiled human foetal lung fibroblast global gene expression in response to TGF&#946;1 revealing the induction of Inhibitor of Differentiation-1 (ID1) and providing evidence of smooth muscle cell phenotypic switching <abbrgrp><abbr bid="B32">32</abbr></abbrgrp>. Also, Liu <it>et al</it>. analyzed the lung gene expression in bleomycin-exposed rats to identify genes that may be involved in fibrosis, and identified FIZZ1 as critical mediator in myofibroblast differentiation <abbrgrp><abbr bid="B33">33</abbr></abbrgrp>.</p>
         <p>Our study demonstrated coordinate expression of distinct gene families with the response dominated by mediators of the immune response, suggesting the importance of immunological events in the initiation of lung injury. However, repetitive lung injury, that is the synergistic activity of bleomycin and TGF&#946;1 led to a switch in this transcriptomic response. The double injury mice were characterised by molecular patterns that are hallmarks of fibrosis, including extracellular matrix and cell growth and regulation gene clusters. These data provide evidence for the mechanism underpinning the exacerbated fibrosis seen in transgenic mice at the tissue level. TGF&#946;1 overexpression primes the cellular machinery to produce a fibrotic transcriptome when exposed to bleomycin emphasising further the importance of this cytokine in the development of tissue fibrosis. Although TGF&#946;1 is a critical initial key response factor after injury, it must be recognised that in humans other cytokines including CTGF, collagen and angiogenic mediators are involved in the pathogenesis of pulmonary fibrosis.</p>
         <p>Genes that encode for mediators of the immune response (biological processes, defence response, humoral immune response and inflammatory response) were found to be altered in significant numbers in the setting of the fibrotic lung. Exposure to this exogenous profibrogenic agent elicits an immune response characterised by upregulation of immune pathway genes <abbrgrp><abbr bid="B34">34</abbr></abbrgrp>. Furthermore the development of tissue fibrosis has previously been demonstrated to be a result of, at least in part, an imbalance in the Th1/Th2 cytokine milieu, where the Th2 pro-fibrotic response is dominant <abbrgrp><abbr bid="B35">35</abbr></abbrgrp>.</p>
         <p>Of note was the finding of a relatively large number of development-associated genes whose expression was significantly altered. The inappropriate recapitulation of developmental processes has been shown to be a disease-initiating event in the setting of renal fibrosis <abbrgrp><abbr bid="B36">36</abbr><abbr bid="B37">37</abbr><abbr bid="B38">38</abbr></abbrgrp>. The finding of these perturbed developmental networks in the lung may indicate a similar role of development gone awry in the setting of lung fibrosis.</p>
         <p>These data demonstrate enhanced collagen deposition in TGF&#946;1 transgenic mice compared to wild type mouse in response to bleomycin wounding. This increase in collagen production, coupled with the observed enhanced active TGF&#946;1 immunostaining in transgenic mice provide further evidence for the pathogenomic role of TGF&#946;1 in the initiation and progression of lung fibrosis.</p>
         <p>The data contained herein provide further evidence for the complex interplay of numerous factors in the development of IPF and provide evidence for the synergistic activity of genetic and exogenous mediators in eliciting fibrosis in the lung. Further investigations will focus on characterising the combination of these factors in patients with IPF, specifically with attention paid to the role of the TGF&#946;1 gene as a prime for subsequent lung injury.</p>
      </sec>
      <sec>
         <st>
            <p>Abbreviations</p>
         </st>
         <p>IPF- Idiopathic Pulmonary Fibrosis;</p>
         <p>TGF&#946;1- Transforming Growth Factor &#946;1.</p>
      </sec>
      <sec>
         <st>
            <p>Authors' contributions</p>
         </st>
         <p>YH completed the animal work and drafted the manuscript. APM completed the functional analysis and wrote the manuscript. DTK completed the microarray and functional analysis. MB, AT, and GM completed the animal work. MWJF oversaw the animal work and wrote the manuscript. PPD oversaw the microarray analysis. JJE conceived, coordinated, funded the project and wrote the manuscript.</p>
         <p>All authors read and approved the final manuscript.</p>
      </sec>
   </bdy>
   <bm>
      <ack>
         <sec>
            <st>
               <p>Acknowledgements</p>
            </st>
            <p>The authors acknowledge the support of the European union, The Irish Lung foundation and the Irish governments' Programme for Research in Third Level Institutions.</p>
         </sec>
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               <au>
                  <snm>Alarcon</snm>
                  <fnm>P</fnm>
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                  <snm>Brady</snm>
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</art>
