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Networks and information flow

Analysis and modeling of complex biological systems to improve the understanding of their function and behavior.

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1.

Research article   Open Access

Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-[cyrillic small letter ka]B signaling networks

Jaewook Joo, Steven J Plimpton, Jean-Loup Faulon BMC Systems Biology 2013, 7:45 (7 June 2013)

Abstract | Provisional PDF | PubMed

2.

Methodology article   Open Access

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study

F Feltus, Stephen P Ficklin, Scott M Gibson, Melissa C Smith BMC Systems Biology 2013, 7:44 (5 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

3.

Research article   Open Access

Modeling mutant phenotypes and oscillatory dynamics in the Saccharomyces cerevisiae cAMP-PKA pathway

Kevin Gonzales, Ömür Kayıkçı, David G Schaeffer, Paul M Magwene BMC Systems Biology 2013, 7:40 (17 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

4.

Methodology article   Open Access

Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics

Luca Salerno, Carlo Cosentino, Alessio Merola, Declan G Bates, Francesco Amato BMC Systems Biology 2013, 7:39 (17 May 2013)

Abstract | Provisional PDF | PubMed

5.

Research article   Open Access Highly Accessed

Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis

Emily Greenfest-Allen, Jeffrey Malik, James Palis, Christian J Stoeckert BMC Systems Biology 2013, 7:38 (15 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

6.

Research article   Open Access Highly Accessed

Dynamic modeling of yeast meiotic initiation

Debjit Ray, Yongchun Su, Ping Ye BMC Systems Biology 2013, 7:37 (1 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

7.

Research article   Open Access Highly Accessed

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

Tobias Österlund, Intawat Nookaew, Sergio Bordel, Jens Nielsen BMC Systems Biology 2013, 7:36 (30 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Research article   Open Access Highly Accessed

A metabolite-centric view on flux distributions in genome-scale metabolic models

S Riemer, René Rex, Dietmar Schomburg BMC Systems Biology 2013, 7:33 (12 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

Research article   Open Access Highly Accessed

Construction and analysis of the protein-protein interaction network related to essential hypertension

Jihua Ran, Hui Li, Jianfeng Fu, Ling Liu, Yanchao Xing, Xiumei Li, Hongming Shen, Yan Chen, Xiaofang Jiang, Yan Li, Huiwu Li BMC Systems Biology 2013, 7:32 (12 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

10.

Research article   Open Access Highly Accessed

Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs

Alexandra Pokhilko, Paloma Mas, Andrew J Millar BMC Systems Biology 2013, 7:23 (19 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

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