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1.
Analysis of l-glutamic acid fermentation by using a dynamic metabolic simulation model of Escherichia coli
Yousuke Nishio, Soichi Ogishima, Masao Ichikawa, Yohei Yamada, Yoshihiro Usuda, Tadashi Masuda, Hiroshi Tanaka BMC Systems Biology 2013, 7 :92 (22 September 2013)
Abstract | Provisional PDF
| PubMed
2.
Identification of parameter correlations for parameter estimation in dynamic biological models
Pu Li, Quoc Dong Vu BMC Systems Biology 2013, 7 :91 (22 September 2013)
Abstract | Full text | PDF
| PubMed
3.
An online model composition tool for system biology models
Sarp A Coskun, A Ercument Cicek, Nicola Lai, Ranjan K Dash, Z Meral Ozsoyoglu, Gultekin Ozsoyoglu BMC Systems Biology 2013, 7 :88 (5 September 2013)
Abstract | Full text | PDF
| ePUB | PubMed
4.
Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans -zebrafish interaction study
Yu-Chao Wang, Che Lin, Ming-Ta Chuang, Wen-Ping Hsieh, Chung-Yu Lan, Yung-Jen Chuang, Bor-Sen Chen BMC Systems Biology 2013, 7 :79 (16 August 2013)
Abstract | Full text | PDF
| ePUB | PubMed
5.
New network topology approaches reveal differential correlation patterns in breast cancer
Michael Bockmayr, Frederick Klauschen, Balazs Györffy, Carsten Denkert, Jan Budczies BMC Systems Biology 2013, 7 :78 (15 August 2013)
Abstract | Full text | PDF
| ePUB | PubMed
6.
Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems
Maria Rodriguez-Fernandez, Markus Rehberg, Andreas Kremling, Julio R Banga BMC Systems Biology 2013, 7 :76 (12 August 2013)
Abstract | Full text | PDF
| PubMed
7.
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson, Daniel R Hyduke BMC Systems Biology 2013, 7 :74 (8 August 2013)
Abstract | Full text | PDF
| ePUB | PubMed
8.
Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation
Andrea Pinna, Sandra Heise, Robert J Flassig, Alberto Fuente, Steffen Klamt BMC Systems Biology 2013, 7 :73 (8 August 2013)
Abstract | Full text | PDF
| PubMed
9.
Nested sampling for parameter inference in systems biology: application to an exemplar circadian model
Stuart Aitken, Ozgur E Akman BMC Systems Biology 2013, 7 :72 (30 July 2013)
Abstract | Full text | PDF
| ePUB | PubMed
10.
Estimating confidence intervals in predicted responses for oscillatory biological models
Peter C St John, Francis J Doyle BMC Systems Biology 2013, 7 :71 (29 July 2013)
Abstract | Full text | PDF
| ePUB | PubMed
