Research article  

An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis

Yi Zhang, Kim A Hatch, Joanna Bacon, Lorenz Wernisch BMC Systems Biology 2010, 4:37 (31 March 2010)

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Research article  

Building and analyzing protein interactome networks by cross-species comparisons

Amy M Wiles, Mark Doderer, Jianhua Ruan, Ting-Ting Gu, Dashnamoorthy Ravi, Barron Blackman, Alexander JR Bishop BMC Systems Biology 2010, 4:36 (30 March 2010)

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Methodology article  

Prediction of novel synthetic pathways for the production of desired chemicals

Ayoun Cho, Hongseok Yun, Jin Park, Sang Lee, Sunwon Park BMC Systems Biology 2010, 4:35 (28 March 2010)

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Research article  

Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study

Jamie Twycross, Leah R Band, Malcolm J Bennett, John R King, Natalio Krasnogor BMC Systems Biology 2010, 4:34 (26 March 2010)

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Methodology article  

Automated characterization of cell shape changes during amoeboid motility by skeletonization

Yuan Xiong, Cathryn Kabacoff, Jonathan Franca-Koh, Peter N Devreotes, Douglas N Robinson, Pablo A Iglesias BMC Systems Biology 2010, 4:33 (24 March 2010)

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Research article  

Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans

Suresh Swain, Jodie F Wren, Stephen R Stürzenbaum, Peter Kille, A John Morgan, Tjalling Jager, Martijs J Jonker, Peter K Hankard, Claus Svendsen, Jenifer Owen, B Ann Hedley, Mark Blaxter, David J Spurgeon BMC Systems Biology 2010, 4:32 (23 March 2010)

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Research article  

Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production

Seth B Roberts, Christopher M Gowen, J Paul Brooks, Stephen S Fong BMC Systems Biology 2010, 4:31 (22 March 2010)

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Research article  

Genotype networks in metabolic reaction spaces

Areejit Samal, João F Matias Rodrigues, Jürgen Jost, Olivier C Martin, Andreas Wagner BMC Systems Biology 2010, 4:30 (19 March 2010)

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Research article  

A novel approach to investigate tissue-specific trinucleotide repeat instability

Jong-Min Lee, Jie Zhang, Andrew I Su, John R Walker, Tim Wiltshire, Kihwa Kang, Ella Dragileva, Tammy Gillis, Edith T Lopez, Marie-Josee Boily, Michel Cyr, Isaac Kohane, James F Gusella, Marcy E MacDonald, Vanessa C Wheeler BMC Systems Biology 2010, 4:29 (19 March 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

Methodology article  

Zooming of states and parameters using a lumping approach including back-translation

Mikael Sunnåker, Henning Schmidt, Mats Jirstrand, Gunnar Cedersund BMC Systems Biology 2010, 4:28 (18 March 2010)

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Research article  

A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis

Stefan Streif, Dieter Oesterhelt, Wolfgang Marwan BMC Systems Biology 2010, 4:27 (18 March 2010)

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Research article  

The internal state of medium spiny neurons varies in response to different input signals

Zhen Qi, Gary W Miller, Eberhard O Voit BMC Systems Biology 2010, 4:26 (17 March 2010)

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Research article  

Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP

Dominic P Tolle, Nicolas Le Novère BMC Systems Biology 2010, 4:25 (16 March 2010)

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Software  

Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes

Dominic P Tolle, Nicolas Le Novère BMC Systems Biology 2010, 4:24 (16 March 2010)

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Research article  

Two additive mechanisms impair the differentiation of 'substrate-selective' p38 inhibitors from classical p38 inhibitors in vitro

Bart S Hendriks, Kelly M Seidl, Jeffrey R Chabot BMC Systems Biology 2010, 4:23 (15 March 2010)

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Correspondence  

So what do we really mean when we say that systems biology is holistic?

Derek Gatherer BMC Systems Biology 2010, 4:22 (12 March 2010)

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Research article  

Parameter estimation and inference for stochastic reaction-diffusion systems: application to morphogenesis in D. melanogaster

Michael A Dewar, Visakan Kadirkamanathan, Manfred Opper, Guido Sanguinetti BMC Systems Biology 2010, 4:21 (10 March 2010)

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Research article  

Integrated cellular network of transcription regulations and protein-protein interactions

Yu-Chao Wang, Bor-Sen Chen BMC Systems Biology 2010, 4:20 (8 March 2010)

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Research article  

Probability distributed time delays: integrating spatial effects into temporal models

Tatiana T Marquez-Lago, André Leier, Kevin Burrage BMC Systems Biology 2010, 4:19 (4 March 2010)

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Research article  

Statistical model comparison applied to common network motifs

Núria Domedel-Puig, Iosifina Pournara, Lorenz Wernisch BMC Systems Biology 2010, 4:18 (3 March 2010)

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Research article  

Reverse engineering a gene network using an asynchronous parallel evolution strategy

Luke Jostins, Johannes Jaeger BMC Systems Biology 2010, 4:17 (2 March 2010)

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