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1.
1026 Accesses
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Crystal structures of a halophilic archaeal malate synthase from Haloferax volcanii and comparisons with isoforms A and G
Colten D Bracken, Amber M Neighbor, Kenneth K Lamlenn, Geoffrey C Thomas, Heidi L Schubert, Frank G Whitby, Bruce R Howard BMC Structural Biology 2011, 11:23 (10 May 2011)
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Editor’s summary
The archaebacterial isoform of malate synthase shares a beta 8/alpha 8 (TIM) barrel structure and a conserved catalytic mechanism with isoforms A and G, although it is found in trimer/hexamer equilibrium and displays N- and C-terminal truncations.
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2.
710 Accesses
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Thermostability in endoglucanases is fold-specific
Ragothaman M Yennamalli, Andrew J Rader, Jeffrey D Wolt, Taner Z Sen BMC Structural Biology 2011, 11:10 (3 February 2011)
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3.
709 Accesses
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Crystal structure of putative CbiT from Methanocaldococcus jannaschii: an intermediate enzyme activity in cobalamin (vitamin B12) biosynthesis
Balasundaram Padmanabhan, Shigeyuki Yokoyama, Yoshitaka Bessho BMC Structural Biology 2013, 13:10 (20 May 2013)
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4.
698 Accesses
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The role of hydrophobic interactions in positioning of peripheral proteins in membranes
Andrei L Lomize, Irina D Pogozheva, Mikhail A Lomize, Henry I Mosberg BMC Structural Biology 2007, 7:44 (29 June 2007)
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5.
695 Accesses
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Mechanisms underlying dioxygen reduction in laccases. Structural and modelling studies focusing on proton transfer
Isabel Bento, Catarina S Silva, Zhenjia Chen, Lígia O Martins, Peter F Lindley, Cláudio M Soares BMC Structural Biology 2010, 10:28 (7 September 2010)
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6.
672 Accesses
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The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes
Changsoo Chang, Penny Coggill, Alex Bateman, Robert D Finn, Marcin Cymborowski, Zbyszek Otwinowski, Wladek Minor, Lour Volkart, Andrzej Joachimiak BMC Structural Biology 2009, 9:75 (17 December 2009)
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7.
627 Accesses
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Prediction of protein-protein interactions in dengue virus coat proteins guided by low resolution cryoEM structures
Rupali A Gadkari, Narayanaswamy Srinivasan BMC Structural Biology 2010, 10:17 (16 June 2010)
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| PubMed | Cited on BioMed Central
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8.
626 Accesses
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Crystal structure of human IPS-1/MAVS/VISA/Cardif caspase activation recruitment domain
Jane A Potter, Richard E Randall, Garry L Taylor BMC Structural Biology 2008, 8:11 (28 February 2008)
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9.
626 Accesses
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LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation
Bingding Huang, Michael Schroeder BMC Structural Biology 2006, 6:19 (24 September 2006)
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10.
541 Accesses
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Types of inter-atomic interactions at the MHC-peptide interface: Identifying commonality from accumulated data
Png Adrian, Ganapathy Rajaseger, Venkatarajan Mathura, Meena Sakharkar, Pandjassarame Kangueane BMC Structural Biology 2002, 2:2 (13 May 2002)
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11.
534 Accesses
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The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the β-clamp processivity factor
Atif A Patoli, Jody A Winter, Karen A Bunting BMC Structural Biology 2013, 13:12 (4 July 2013)
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12.
517 Accesses
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Molecular dynamics simulations on the Tre1 G protein-coupled receptor: exploring the role of the arginine of the NRY motif in Tre1 structure
Margaret M Pruitt, Monica H Lamm, Clark R Coffman BMC Structural Biology 2013, 13:15 (18 September 2013)
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13.
503 Accesses
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The Ramachandran plots of glycine and pre-proline
Bosco K Ho, Robert Brasseur BMC Structural Biology 2005, 5:14 (16 August 2005)
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14.
392 Accesses
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Energetics of the protein-DNA-water interaction
Francesca Spyrakis, Pietro Cozzini, Chiara Bertoli, Anna Marabotti, Glen E Kellogg, Andrea Mozzarelli BMC Structural Biology 2007, 7:4 (10 January 2007)
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15.
373 Accesses
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A structural role for the PHP domain in E. coli DNA polymerase III
Tiago Barros, Joel Guenther, Brian Kelch, Jordan Anaya, Arjun Prabhakar, Mike O’Donnell, John Kuriyan, Meindert H Lamers BMC Structural Biology 2013, 13:8 (14 May 2013)
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Editor’s summary
Metal binding can be restored to E. coli polymerase III PHP domain with only three point mutations, demonstrating that the domain structure is highly conserved and is a major structural element of this bacterial replicative polymerase.
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16.
348 Accesses
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Structural insights into the substrate tunnel of Saccharomyces cerevisiae carbonic anhydrase Nce103
Yan-Bin Teng, Yong-Liang Jiang, Yong-Xing He, Wei-Wei He, Fu-Ming Lian, Yuxing Chen, Cong-Zhao Zhou BMC Structural Biology 2009, 9:67 (24 October 2009)
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17.
351 Accesses
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Crosslinking and mass spectrometry suggest that the isolated NTD domain dimer of Moloney murine leukemia virus integrase adopts a parallel arrangement in solution
Daniel R Henriquez, Caifeng Zhao, Haiyan Zheng, José J Arbildua, Mónica L Acevedo, Monica J Roth, Oscar Leon BMC Structural Biology 2013, 13:14 (11 July 2013)
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18.
337 Accesses
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Dependence of α-helical and β-sheet amino acid propensities on the overall protein fold type
Kazuo Fujiwara, Hiromi Toda, Masamichi Ikeguchi BMC Structural Biology 2012, 12:18 (2 August 2012)
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19.
306 Accesses
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Antibody-protein interactions: benchmark datasets and prediction tools evaluation
Julia V Ponomarenko, Philip E Bourne BMC Structural Biology 2007, 7:64 (2 October 2007)
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20.
273 Accesses
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Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach
Rajaram Gana, Shruti Rao, Hongzhan Huang, Cathy Wu, Sona Vasudevan BMC Structural Biology 2013, 13:6 (25 April 2013)
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Editor’s summary
A new systematic approach for grouping protein structures based upon the type and conformation of the ligand they bind to reveals some unexpected findings and extends the existing structural classification of S-adenosyl-L-13 methionine (SAM) binding proteins
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21.
266 Accesses
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Natural history of S-adenosylmethionine-binding proteins
Piotr Z Kozbial, Arcady R Mushegian BMC Structural Biology 2005, 5:19 (14 October 2005)
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Editor’s summary
Analysis of the phyletic distribution and structural similarities of S-adenosylmethionine-binding proteins indicate that two widespread folds, the Rossman fold and TIM barrel, have repeatedly evolved for diverse types of reactions that require S-adenosylmethionine.
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22.
231 Accesses
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Crystal structure of signal regulatory protein gamma (SIRPγ) in complex with an antibody Fab fragment
Joanne E Nettleship, Jingshan Ren, David J Scott, Nahid Rahman, Deborah Hatherley, Yuguang Zhao, David I Stuart, A Barclay, Raymond J Owens BMC Structural Biology 2013, 13:13 (4 July 2013)
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Editor’s summary
Crystallisation of signal regulatory protein SIRPgamma complexed with the Fab fragment of the OX117 antibody reveals conservation of binding domains between members of the SIRP family and dimerization specific to the crystal structure.
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23.
229 Accesses
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Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
Stephan Herget, Philip V Toukach, René Ranzinger, William E Hull, Yuriy A Knirel, Claus-Wilhelm von der Lieth BMC Structural Biology 2008, 8:35 (11 August 2008)
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24.
220 Accesses
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Crystal structural analysis of human serum albumin complexed with hemin and fatty acid
Patricia A Zunszain, Jamie Ghuman, Teruyuki Komatsu, Eishun Tsuchida, Stephen Curry BMC Structural Biology 2003, 3:6 (7 July 2003)
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Editor’s summary
The structure of a human serum albumin-hemin-myristate complex reveals a new conformation plus key polar and hydrophobic interactions that should be useful in designing HSA-heme complexes with modified oxygen-binding properties.
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25.
204 Accesses
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K2D2: Estimation of protein secondary structure from circular dichroism spectra
Carolina Perez-Iratxeta, Miguel A Andrade-Navarro BMC Structural Biology 2008, 8:25 (13 May 2008)
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| PubMed | Cited on BioMed Central
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Editor’s summary
Predicting the secondary structure of proteins can be facilitated by the K2D2 method, which compares circular dichroism (CD) spectra of unknown protein structures to a self-organizing map of CD spectra for known structures.
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