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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Matthew Kaiser PhD
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 BMC Structural Biology, Volume 9
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Research article
 
Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model
Wenjun Zheng, Mustafa Tekpinar
BMC Structural Biology 2009, 9:45 (10July2009)
[Abstract] [Provisional PDF]
Research article
Amyloidogenic determinants are usually not buried
Kimon K Frousios, Vassiliki A Iconomidou, Carolina-Maria Karletidi, Stavros J Hamodrakas
BMC Structural Biology 2009, 9:44 (9July2009)
[Abstract] [Provisional PDF]
Research article
Exon 6 of human JAG1 encodes a conserved structural unit
Alessandro Pintar, Corrado Guarnaccia, Somdutta Dhir, Sandor Pongor
BMC Structural Biology 2009, 9:43 (8July2009)
[Abstract] [Provisional PDF]
Research article
Conservation of structure and activity in Plasmodium purine nucleoside phosphorylases
Apirat Chaikuad, R. Leo Brady
BMC Structural Biology 2009, 9:42 (3July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Improved estimation of structure predictor quality
Kevin W DeRonne, George Karypis
BMC Structural Biology 2009, 9:41 (30June2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Structural and Phylogenetic Analysis of a Conserved Actinobacteria-Specific Protein (ASP1; SCO1997) from Streptomyces coelicolor
Beile Gao, Seiji Sugiman-Marangos, Murray S Junop, Radhey S Gupta
BMC Structural Biology 2009, 9:40 (10June2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Modelling substrate specificity and enantioselectivity for lipases and esterases by substrate-imprinted docking
P Benjamin Juhl, Peter Trodler, Sadhna Tyagi, J rgen Pleiss
BMC Structural Biology 2009, 9:39 (3June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Modeling of solvent-dependent conformational transitions in Burkholderia cepacia lipase
Peter Trodler, Rolf D Schmid, Jrgen Pleiss
BMC Structural Biology 2009, 9:38 (28May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Analysis of proteins with the 'hot dog' fold: Prediction of function and identification of catalytic residues of hypothetical proteins
Lakshmi S Pidugu, Koustav Maity, Karthikeyan Ramaswamy, Namita Surolia, Kaza Suguna
BMC Structural Biology 2009, 9:37 (28May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
On the mechanism of autoinhibition of the RhoA-specific nucleotide exchange factor PDZRhoGEF
Meiying Zheng, Tomasz Cierpicki, Ko Momotani, Mykhaylo V Artamonov, Urszula Derewenda, John H Bushweller, Avril V Somlyo, Zygmunt S Derewenda
BMC Structural Biology 2009, 9:36 (21May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information
Pascal Benkert, Torsten Schwede, Silvio CE Tosatto
BMC Structural Biology 2009, 9:35 (20May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Universal partitioning of the hierarchical fold network of 50-residue segments in proteins
Jun-ichi Ito, Yuki Sonobe, Kazuyoshi Ikeda, Kentaro Tomii, Junichi Higo
BMC Structural Biology 2009, 9:34 (20May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Improving protein structure similarity searches using domain boundaries based on conserved sequence information
Kenneth Evan Thompson, Yanli Wang, Tom Madej, Stephen H Bryant
BMC Structural Biology 2009, 9:33 (19May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Conformational flexibility and molecular interactions of an archaeal homologue of the Shwachman-Bodian-Diamond syndrome protein
C Leong Ng, David G Waterman, Eugene V Koonin, Alison D Walters, James PJ Chong, Michail N Isupov, Andrey A Lebedev, David HJ Bunka, Peter G Stockley, Miguel Ortiz-Lombard a, Alfred A Antson
BMC Structural Biology 2009, 9:32 (19May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Interaction of perfluorooctanoic acid with human serum albumin
Ling-Ling Wu, Hong-Wen Gao, Nai-Yun Gao, Fang-Fang Chen, Ling Chen
BMC Structural Biology 2009, 9:31 (14May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks
Munazah Andrabi, Kenji Mizuguchi, Akinori Sarai, Shandar Ahmad
BMC Structural Biology 2009, 9:30 (13May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Three dimensional shape comparison of flexible proteins using the local-diameter descriptor
Yi Fang, Yu-Shen Liu, Karthik Ramani
BMC Structural Biology 2009, 9:29 (12May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Improving consensus contact prediction via server correlation reduction
Xin Gao, Dongbo Bu, Jinbo Xu, Ming Li
BMC Structural Biology 2009, 9:28 (6May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Software
PTools: an opensource molecular docking library
Adrien Saladin, S bastien Fiorucci, Pierre Poulain, Chantal Prvost, Martin Zacharias
BMC Structural Biology 2009, 9:27 (1May2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: its application to human transcription factors
Satoshi Fukuchi, Keiichi Homma, Yoshiaki Minezaki, Takashi Gojobori, Ken Nishikawa
BMC Structural Biology 2009, 9:26 (30April2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
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