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Penelope Webb, PhD

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BMC  BMC Structural Biology, Volume 8


Research article
Interactions between the quality control ubiquitin ligase CHIP and ubiquitin conjugating enzymes.
Zhen Xu, Ekta Kohli, Karl I Devlin, Michael Bold, Jay C Nix, Saurav Misra
BMC Structural Biology 2008, 8:26 (16May2008)
[Abstract] [Provisional PDF]

Software
K2D2: estimation of protein secondary structure from circular dichroism spectra
Carolina Perez-Iratxeta, Miguel A Andrade-Navarro
BMC Structural Biology 2008, 8:25 (13May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Improving the accuracy of template-based predictions by mixing and matching between initial models
Tianyun Liu, Michal Guerquin, Ram Samudrala
BMC Structural Biology 2008, 8:24 (5May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Exploring Allosteric Coupling in the alpha-Subunit of Heterotrimeric G Proteins Using Evolutionary and Ensemble-Based Approaches
Kemal Sayar, Ozlem Ugur, Tong Liu, Vincent J Hilser, Ongun Onaran
BMC Structural Biology 2008, 8:23 (2May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Structural insights on the pamoic acid and the 8 kDa domain of DNA polymerase beta complex: Towards the design of higher-affinity inhibitors
Corinne Hazan, Franois Boudsocq, Virginie Gervais, Olivier Saurel, Marion Ciais, Christophe Cazaux, Jerzy Czaplicki, Alain Milon
BMC Structural Biology 2008, 8:22 (16April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Software
PSAIA Protein Structure and Interaction Analyzer
Josip Mihel, Mile iki, Sanja Tomi, Branko Jeren, Kristian Vlahoviek
BMC Structural Biology 2008, 8:21 (9April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog
Matthew J Cuneo, Yaji Tian, Malin Allert, Homme W Hellinga
BMC Structural Biology 2008, 8:20 (28March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Charge environments around phosphorylation sites in proteins
James Kitchen, Rebecca E Saunders, Jim Warwicker
BMC Structural Biology 2008, 8:19 (25March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Methodology article
A multi-template combination algorithm for protein comparative modeling
Jianlin Cheng
BMC Structural Biology 2008, 8:18 (17March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Solution structure of the Legionella pneumophila Mip-rapamycin complex
Andreas Ceymann, Martin Horstmann, Philipp Ehses, Kristian Schweimer, Anne-Katrin Paschke, Michael Steinert, Cornelius Faber
BMC Structural Biology 2008, 8:17 (17March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Donor substrate recognition in the raffinose-bound E342A mutant of fructosyltransferase Bacillus subtilis levansucrase
Guoyu Meng, Klaus Ftterer
BMC Structural Biology 2008, 8:16 (17March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Software
GANDivAWeb: A web server for detecting early folding units ("foldons") from protein 3D structures
Thomas Laborde, Masaru Tomita, Arun Krishnan
BMC Structural Biology 2008, 8:15 (7March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
"Hot cores" in proteins: Comparative analysis of the apolar contact area in structures from hyper/thermophilic and mesophilic organisms
Alessandro Paiardini, Riccardo Sali, Francesco Bossa, Stefano Pascarella
BMC Structural Biology 2008, 8:14 (29February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Crystal structures of PI3K-C2 PX domain indicate conformational change associated with ligand binding
Gary N Parkinson, David Vines, Paul C Driscoll, Snezana Djordjevic
BMC Structural Biology 2008, 8:13 (29February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Structural deformation upon protein-protein interaction: A structural alphabet approach
Juliette Martin, Leslie Regad, Hlne Lecornet, Anne-Claude Camproux
BMC Structural Biology 2008, 8:12 (28February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Crystal structure of human IPS-1/MAVS/VISA/Cardif caspase activation recruitment domain
Jane A Potter, Richard E Randall, Garry L Taylor
BMC Structural Biology 2008, 8:11 (28February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Interaction between the C-terminal region of human myelin basic protein and calmodulin: analysis of complex formation and solution structure
Viivi Majava, Maxim V Petoukhov, Nobuhiro Hayashi, Pivi Piril, Dmitri I Svergun, Petri Kursula
BMC Structural Biology 2008, 8:10 (19February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Modeling structure and flexibility of Candida antarctica lipase B in organic solvents
Peter Trodler, Jrgen Pleiss
BMC Structural Biology 2008, 8:9 (6February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Structural basis of GC-1 selectivity for thyroid hormone receptor isoforms
Lucas Bleicher, Ricardo Aparicio, Fabio M Nunes, Leandro Martinez, Sandra M Gomes Dias, Ana Carolina Migliorini Figueira, Maria Auxiliadora Morim Santos, Walter H Venturelli, Rosangela da Silva, Paulo Marcos Donate, Francisco AR Neves, Luiz A Simeoni, John D Baxter, Paul Webb, Munir S Skaf, Igor Polikarpov
BMC Structural Biology 2008, 8:8 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Comparative modelling by restraint-based conformational sampling
Nicholas Furnham, Paul IW de Bakker, Swanand Gore, David F Burke, Tom L Blundell
BMC Structural Biology 2008, 8:7 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

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