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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Danielle Talbot
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| | BMC Structural Biology, Volume 8 |
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Research article
 
Structural characterization of CA1462, the Candida albicans thiamine pyrophosphokinase
Sebastien Santini, Vincent Monchois, Nicolas Mouz, Cecile Sigoillot, Tristan Rousselle, Jean-Michel Claverie, Chantal Abergel
BMC Structural Biology 2008, 8:33 (24July2008)
[Abstract] [Provisional PDF]
Research article
Structural analysis of urate oxidase in complex with its natural substrate inhibited by cyanide: Mechanistic implications.
Laure Gabison, Thierry Prange, Nathalie Colloc'h, Mohamed El Hajji, Bertrand Castro, Mohamed Chiadmi
BMC Structural Biology 2008, 8:32 (20July2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Systematic analysis of the effect of multiple templates on the accuracy of comparative models of protein structure
Suvobrata Chakravarty, Sucheta Godbole, Bing Zhang, Seth Berger, Roberto Sanchez
BMC Structural Biology 2008, 8:31 (16July2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Software
Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA
Benjamin Bardiaux, Aymeric Bernard, Wolfgang Rieping, Michael Habeck, Th r se E Malliavin, Michael Nilges
BMC Structural Biology 2008, 8:30 (5June2008)
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Research article
Protecting role of cosolvents in protein denaturation by SDS: a structural study
Catherine Michaux, Jenny Pouyez, Johan Wouters, Gilbert G Priv
BMC Structural Biology 2008, 8:29 (3June2008)
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Research article
CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations
Sankaran Sandhya, Barah Pankaj, Madabosse Kande Govind, Bernard Offmann, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
BMC Structural Biology 2008, 8:28 (31May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Prediction of structural stability of short beta-hairpin peptides by molecular dynamics and knowledge-based potentials
Karin Noy, Nir Kalisman, Chen Keasar
BMC Structural Biology 2008, 8:27 (29May2008)
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Research article
Interactions between the quality control ubiquitin ligase CHIP and ubiquitin conjugating enzymes
Zhen Xu, Ekta Kohli, Karl I Devlin, Michael Bold, Jay C Nix, Saurav Misra
BMC Structural Biology 2008, 8:26 (16May2008)
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Software
K2D2: Estimation of protein secondary structure from circular dichroism spectra
Carolina Perez-Iratxeta, Miguel A Andrade-Navarro
BMC Structural Biology 2008, 8:25 (13May2008)
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Research article
Improving the accuracy of template-based predictions by mixing and matching between initial models
Tianyun Liu, Michal Guerquin, Ram Samudrala
BMC Structural Biology 2008, 8:24 (5May2008)
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Research article
Exploring allosteric coupling in the  -subunit of Heterotrimeric G proteins using evolutionary and ensemble-based approaches
Kemal Sayar,  zlem U ur, Tong Liu, Vincent J Hilser, Ongun Onaran
BMC Structural Biology 2008, 8:23 (2May2008)
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Research article
Structural insights on the pamoic acid and the 8 kDa domain of DNA polymerase beta complex: Towards the design of higher-affinity inhibitors
Corinne Hazan, Fran ois Boudsocq, Virginie Gervais, Olivier Saurel, Marion Ciais, Christophe Cazaux, Jerzy Czaplicki, Alain Milon
BMC Structural Biology 2008, 8:22 (16April2008)
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Software
PSAIA  Protein Structure and Interaction Analyzer
Josip Mihel, Mile  iki , Sanja Tomi, Branko Jeren, Kristian Vlahovi ek
BMC Structural Biology 2008, 8:21 (9April2008)
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Research article
The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog
Matthew J Cuneo, Yaji Tian, Malin Allert, Homme W Hellinga
BMC Structural Biology 2008, 8:20 (28March2008)
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Research article
Charge environments around phosphorylation sites in proteins
James Kitchen, Rebecca E Saunders, Jim Warwicker
BMC Structural Biology 2008, 8:19 (25March2008)
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Methodology article
A multi-template combination algorithm for protein comparative modeling
Jianlin Cheng
BMC Structural Biology 2008, 8:18 (17March2008)
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Research article
Solution structure of the Legionella pneumophila Mip-rapamycin complex
Andreas Ceymann, Martin Horstmann, Philipp Ehses, Kristian Schweimer, Anne-Katrin Paschke, Michael Steinert, Cornelius Faber
BMC Structural Biology 2008, 8:17 (17March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Donor substrate recognition in the raffinose-bound E342A mutant of fructosyltransferase Bacillus subtilis levansucrase
Guoyu Meng, Klaus F tterer
BMC Structural Biology 2008, 8:16 (17March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Software
GANDivAWeb: A web server for detecting early folding units ("foldons") from protein 3D structures
Thomas Laborde, Masaru Tomita, Arun Krishnan
BMC Structural Biology 2008, 8:15 (7March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
"Hot cores" in proteins: Comparative analysis of the apolar contact area in structures from hyper/thermophilic and mesophilic organisms
Alessandro Paiardini, Riccardo Sali, Francesco Bossa, Stefano Pascarella
BMC Structural Biology 2008, 8:14 (29February2008)
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Research article
Crystal structures of PI3K-C2 PX domain indicate conformational change associated with ligand binding
Gary N Parkinson, David Vines, Paul C Driscoll, Snezana Djordjevic
BMC Structural Biology 2008, 8:13 (29February2008)
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Research article
Structural deformation upon protein-protein interaction: A structural alphabet approach
Juliette Martin, Leslie Regad, Hlne Lecornet, Anne-Claude Camproux
BMC Structural Biology 2008, 8:12 (28February2008)
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Research article
Crystal structure of human IPS-1/MAVS/VISA/Cardif caspase activation recruitment domain
Jane A Potter, Richard E Randall, Garry L Taylor
BMC Structural Biology 2008, 8:11 (28February2008)
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Research article
Interaction between the C-terminal region of human myelin basic protein and calmodulin: analysis of complex formation and solution structure
Viivi Majava, Maxim V Petoukhov, Nobuhiro Hayashi, P ivi Piril, Dmitri I Svergun, Petri Kursula
BMC Structural Biology 2008, 8:10 (19February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Modeling structure and flexibility of Candida antarctica lipase B in organic solvents
Peter Trodler, Jrgen Pleiss
BMC Structural Biology 2008, 8:9 (6February2008)
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Research article
Structural basis of GC-1 selectivity for thyroid hormone receptor isoforms
Lucas Bleicher, Ricardo Aparicio, Fabio M Nunes, Leandro Martinez, Sandra M Gomes Dias, Ana Carolina Migliorini Figueira, Maria Auxiliadora Morim Santos, Walter H Venturelli, Rosangela da Silva, Paulo Marcos Donate, Francisco AR Neves, Luiz A Simeoni, John D Baxter, Paul Webb, Munir S Skaf, Igor Polikarpov
BMC Structural Biology 2008, 8:8 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Comparative modelling by restraint-based conformational sampling
Nicholas Furnham, Paul IW de Bakker, Swanand Gore, David F Burke, Tom L Blundell
BMC Structural Biology 2008, 8:7 (31January2008)
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Research article
Crystal structures of a purple acid phosphatase, representing different steps of this enzyme's catalytic cycle
Gerhard Schenk, Tristan W Elliott, Eleanor Leung, Lyle E Carrington, Nata a Miti, Lawrence R Gahan, Luke W Guddat
BMC Structural Biology 2008, 8:6 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Fast dynamics perturbation analysis for prediction of protein functional sites
Dengming Ming, Judith D Cohn, Michael E Wall
BMC Structural Biology 2008, 8:5 (30January2008)
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Research article
Multiple molecular dynamics simulation of the isoforms of human translation elongation factor 1A reveals reversible fluctuations between "open" and "closed" conformations and suggests specific for eEF1A1 affinity for Ca2+-calmodulin
Dmitry S Kanibolotsky, Oleksandra V Novosyl'na, Catherine M Abbott, Boris S Negrutskii, Anna V El'skaya
BMC Structural Biology 2008, 8:4 (25January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
The crystal structure of the putative peptide-binding fragment from the human Hsp40 protein Hdj1
Junbin Hu, Yunkun Wu, Jingzhi Li, Xinguo Qian, Zhengqing Fu, Bingdong Sha
BMC Structural Biology 2008, 8:3 (22January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Preservation of protein clefts in comparative models
David Piedra, Sergi Lois, Xavier de la Cruz
BMC Structural Biology 2008, 8:2 (16January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Distantly related lipocalins share two conserved clusters of hydrophobic residues: use in homology modeling
Benoit Adam, Benoit Charloteaux, Jerome Beaufays, Luc Vanhamme, Edmond Godfroid, Robert Brasseur, Laurence Lins
BMC Structural Biology 2008, 8:1 (11January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
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