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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Matthew Kaiser PhD
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| | BMC Structural Biology, Volume 7 |
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Research article
 
Structural analysis of inhibition of E. coli methionine aminopeptidase: implication of loop adaptability in selective inhibition of bacterial enzymes
Ze-Qiang Ma, Sheng-Xue Xie, Qing-Qing Huang, Fa-Jun Nan, Thomas D Hurley, Qi-Zhuang Ye
BMC Structural Biology 2007, 7:84 (19December2007)
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Research article
Crystallographic characterization of two novel crystal forms of human insulin induced by chaotropic agents and a shift in pH
Mathias Norrman, Gerd Schluckebier
BMC Structural Biology 2007, 7:83 (19December2007)
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Research article
Characterization of a human coagulation factor Xa-binding site on Viperidae snake venom phospholipases A2 by affinity binding studies and molecular bioinformatics
Grazyna Faure, Veerabasappa T Gowda, Rachid C Maroun
BMC Structural Biology 2007, 7:82 (6December2007)
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Research article
NMR and X-ray analysis of structural additivity in metal binding site-swapped hybrids of rubredoxin
David M LeMaster, Janet S Anderson, Limin Wang, Yi Guo, Hongmin Li, Griselda Hern ndez
BMC Structural Biology 2007, 7:81 (5December2007)
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Research article
Structural analysis of the carboxy terminal PH domain of pleckstrin bound to D-myo-inositol 1,2,3,5,6-pentakisphosphate
Sean G Jackson, Yi Zhang, Richard J Haslam, Murray S Junop
BMC Structural Biology 2007, 7:80 (22November2007)
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Research article
Neutral evolution of Protein-protein interactions: a computational study using simple models
Josselin Noirel, Thomas Simonson
BMC Structural Biology 2007, 7:79 (19November2007)
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Research article
A comprehensive analysis of non-sequential alignments between all protein structures
Alexej Abyzov, Valentin A Ilyin
BMC Structural Biology 2007, 7:78 (16November2007)
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Research article
Using molecular principal axes for structural comparison: determining the tertiary changes of a FAB antibody domain induced by antigenic binding
B David Silverman
BMC Structural Biology 2007, 7:77 (9November2007)
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Research article
Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone
Amutha Ramaswamy, Ilya Ioshikhes
BMC Structural Biology 2007, 7:76 (8November2007)
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Research article
Self-assembly of human latexin into amyloid-like oligomers
Irantzu Pallar s, Clara Berenguer, Francesc X Avils, Josep Vendrell, Salvador Ventura
BMC Structural Biology 2007, 7:75 (8November2007)
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Methodology article
NMR spectroscopic and analytical ultracentrifuge analysis of membrane protein detergent complexes
Innokentiy Maslennikov, Georgia Kefala, Casey Johnson, Roland Riek, Senyon Choe, Witek Kwiatkowski
BMC Structural Biology 2007, 7:74 (8November2007)
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Research article
Molecular dynamics simulation of human LOX-1 provides an explanation for the lack of OxLDL binding to the Trp150Ala mutant
Mattia Falconi, Silvia Biocca, Giuseppe Novelli, Alessandro Desideri
BMC Structural Biology 2007, 7:73 (7November2007)
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Research article
Fragment-based identification of determinants of conformational and spectroscopic change at the ricin active site
John H Carra, Colleen A McHugh, Sheila Mulligan, LeeAnn M Machiesky, Alexei S Soares, Charles B Millard
BMC Structural Biology 2007, 7:72 (6November2007)
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Research article
The structure of mollusc larval shells formed in the presence of the chitin synthase inhibitor Nikkomycin Z
Veronika Sch nitzer, Ingrid M Weiss
BMC Structural Biology 2007, 7:71 (6November2007)
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Research article
Structure of Arabidopsis thaliana 5-methylthioribose kinase reveals a more occluded active site than its bacterial homolog
Shao-Yang Ku, Kenneth A Cornell, P Lynne Howell
BMC Structural Biology 2007, 7:70 (25October2007)
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Research article
Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+
Alessandro S Nascimento, Daniela L Catalano-Dupuy, Amanda Bernardes, Mario de Oliveira Neto, Maria Auxiliadora M Santos, Eduardo A Ceccarelli, Igor Polikarpov
BMC Structural Biology 2007, 7:69 (24October2007)
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Research article
The structure of Mycobacteria 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase, an essential enzyme, provides a platform for drug discovery
Lori Buetow, Amanda C Brown, Tanya Parish, William N Hunter
BMC Structural Biology 2007, 7:68 (23October2007)
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Research article
Glutathione mediated regulation of oligomeric structure and functional activity of Plasmodium falciparum glutathione S-transferase
Timir Tripathi, Stefan Rahlfs, Katja Becker, Vinod Bhakuni
BMC Structural Biology 2007, 7:67 (17October2007)
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Research article
The binding site for neohesperidin dihydrochalcone at the human sweet taste receptor
Marcel Winnig, Bernd Bufe, Nicole A Kratochwil, Jay P Slack, Wolfgang Meyerhof
BMC Structural Biology 2007, 7:66 (12October2007)
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Research article
Structural disorder promotes assembly of protein complexes
Hedi Hegyi, Eva Schad, Peter Tompa
BMC Structural Biology 2007, 7:65 (8October2007)
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Research article
Antibody-protein interactions: benchmark datasets and prediction tools evaluation
Julia V Ponomarenko, Philip E Bourne
BMC Structural Biology 2007, 7:64 (2October2007)
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Research article
Metal ion-dependent, reversible, protein filament formation by designed beta-roll polypeptides
Andrew J Scotter, Meng Guo, Melanie M Tomczak, Margaret E Daley, Robert L Campbell, Richard J Oko, David A Bateman, Avijit Chakrabartty, Brian D Sykes, Peter L Davies
BMC Structural Biology 2007, 7:63 (1October2007)
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Research article
X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family
Rajiv Tyagi, Stephen K Burley, Subramanyam Swaminathan
BMC Structural Biology 2007, 7:62 (1October2007)
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Research article
Identification of DNA-binding protein target sequences by physical effective energy functions: free energy analysis of lambda repressor-DNA complexes.
Elisabetta Moroni, Michele Caselle, Federico Fogolari
BMC Structural Biology 2007, 7:61 (27September2007)
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Research article
Crystal structure of a blue laccase from Lentinus tigrinus: evidences for intermediates in the molecular oxygen reductive splitting by multicopper oxidases
Marta Ferraroni, Nina M Myasoedova, Vadim Schmatchenko, Alexey A Leontievsky, Ludmila A Golovleva, Andrea Scozzafava, Fabrizio Briganti
BMC Structural Biology 2007, 7:60 (26September2007)
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Research article
Crystal structure of Leishmania tarentolae hypoxanthine-guanine phosphoribosyltransferase
Paulo S Monzani, Stefano Trapani, Otavio H Thiemann, Glaucius Oliva
BMC Structural Biology 2007, 7:59 (25September2007)
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Research article
Grb7 SH2 domain structure and interactions with a cyclic peptide inhibitor of cancer cell migration and proliferation
Corrine J Porter, Jacqueline M Matthews, Joel P Mackay, Sharon E Pursglove, Jason W Schmidberger, Peter J Leedman, Stephanie C Pero, David N Krag, Matthew CJ Wilce, Jacqueline A Wilce
BMC Structural Biology 2007, 7:58 (25September2007)
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Research article
Solution structure of the second bromodomain of Brd2 and its specific interaction with acetylated histone tails
Hongda Huang, Jiahai Zhang, Weiqun Shen, Xingsheng Wang, Jiawen Wu, Jihui Wu, Yunyu Shi
BMC Structural Biology 2007, 7:57 (12September2007)
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Research article
Spectrum of disease-causing mutations in protein secondary structures
Sofia Khan, Mauno Vihinen
BMC Structural Biology 2007, 7:56 (29August2007)
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Research article
Dimerization of inositol monophosphatase Mycobacterium tuberculosis SuhB is not constitutive, but induced by binding of the activator Mg2+
Alistair K Brown, Guoyu Meng, Hemza Ghadbane, David J Scott, Lynn G Dover, Jr me Nigou, Gurdyal S Besra, Klaus F tterer
BMC Structural Biology 2007, 7:55 (28August2007)
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Research article
Computational modeling of protein mutant stability: analysis and optimization of statistical potentials and structural features reveal insights into prediction model development
Vijaya Parthiban, M Michael Gromiha, Madenhalli Abhinandan, Dietmar Schomburg
BMC Structural Biology 2007, 7:54 (16August2007)
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Research article
Structural footprinting in protein structure comparison: the impact of structural fragments
Elena Zotenko, Rezarta Islamaj Dogan, W John Wilbur, Dianne P O'Leary, Teresa M Przytycka
BMC Structural Biology 2007, 7:53 (9August2007)
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Research article
Structure of a lectin from Canavalia gladiata seeds: new structural insights for old molecules
Pl nio Delatorre, Bruno AM Rocha, Emmanuel P Souza, Taian M Oliveira, Gustavo A Bezerra, Frederico BMB Moreno, Beatriz T Freitas, Tatiane Santi-Gadelha, Alexandre H Sampaio, Walter F Azevedo Jr, Benildo S Cavada
BMC Structural Biology 2007, 7:52 (2August2007)
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Research article
Observation of glycine zipper and unanticipated occurrence of ambidextrous helices in the crystal structure of a chiral undecapeptide
Rudresh Acharya, Madhvi Gupta, Suryanarayanarao Ramakumar, Udupi A Ramagopal, Virander S Chauhan
BMC Structural Biology 2007, 7:51 (1August2007)
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Research article
Comparative Analysis of Protein Structure Alignments
Gabriele Mayr, Francisco S Domingues, Peter Lackner
BMC Structural Biology 2007, 7:50 (26July2007)
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Research article
Search for allosteric disulfide bonds in NMR structures
Bryan Schmidt, Philip J Hogg
BMC Structural Biology 2007, 7:49 (20July2007)
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Research article
Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily
Elena M Ibryashkina, Marina V Zakharova, Vladimir B Baskunov, Ekaterina S Bogdanova, Maxim O Nagornykh, Marat M Den'mukhamedov, Bogdan S Melnik, Andrzej Kolinski, Dominik Gront, Marcin Feder, Alexander S Solonin, Janusz M Bujnicki
BMC Structural Biology 2007, 7:48 (12July2007)
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Research article
Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties
Jung-Sue Byun, Jin-Kyu Rhee, Nam Doo Kim, JeongHyeok Yoon, Dong-Uk Kim, Eunhee Koh, Jong-Won Oh, Hyun-Soo Cho
BMC Structural Biology 2007, 7:47 (12July2007)
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Methodology article
(NZ)CH...O Contacts assist crystallization of a ParB-like nuclease
Neil Shaw, Chongyun Cheng, Wolfram Tempel, Jessie Chang, Joseph Ng, Xin-Yu Wang, Sarah Perrett, John Rose, Zihe Rao, Bi-Cheng Wang, Zhi-Jie Liu
BMC Structural Biology 2007, 7:46 (7July2007)
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Research article
Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Norbert Schormann, Alexei Grigorian, Alexandra Samal, Raman Krishnan, Lawrence DeLucas, Debasish Chattopadhyay
BMC Structural Biology 2007, 7:45 (2July2007)
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Research article
The role of hydrophobic interactions in positioning of peripheral proteins in membranes
Andrei L Lomize, Irina D Pogozheva, Mikhail A Lomize, Henry I Mosberg
BMC Structural Biology 2007, 7:44 (29June2007)
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Research article
Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field
Sebastian Kmiecik, Dominik Gront, Andrzej Kolinski
BMC Structural Biology 2007, 7:43 (29June2007)
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Research article
X-ray structures of Na-GST-1 and Na-GST-2 two glutathione s-transferase from the human hookworm Necator americanus
Oluwatoyin A Asojo, Kohei Homma, Meghan Sedlacek, Michelle Ngamelue, Gaddam N Goud, Bin Zhan, Vehid Deumic, Oluyomi Asojo, Peter J Hotez
BMC Structural Biology 2007, 7:42 (26June2007)
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Research article
Differential scanning calorimetry study of glycerinated rabbit psoas muscle fibres in intermediate state of ATP hydrolysis
Timea Dergez, Dnes L rinczy, Franciska Knczl, Nelli Farkas, Joseph Belagyi
BMC Structural Biology 2007, 7:41 (24June2007)
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Research article
Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches
Lukasz Knizewski, Lisa N Kinch, Nick V Grishin, Leszek Rychlewski, Krzysztof Ginalski
BMC Structural Biology 2007, 7:40 (20June2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Cation induced differential effect on structural and functional properties of Mycobacterium tuberculosis  -Isopropylmalate synthase
Kulwant Singh, Vinod Bhakuni
BMC Structural Biology 2007, 7:39 (19June2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Crystal structure of Saccharomyces cerevisiae 6-phosphogluconate dehydrogenase Gnd1
Weiwei He, Yi Wang, Wei Liu, Cong-Zhao Zhou
BMC Structural Biology 2007, 7:38 (14June2007)
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Research article
In silico screening of mutational effects on enzyme-proteic inhibitor affinity: a docking-based approach
Daniele Dell'Orco, Pier Giuseppe De Benedetti, Francesca Fanelli
BMC Structural Biology 2007, 7:37 (8June2007)
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Research article
Engineering of PA-IIL lectin from Pseudomonas aeruginosa  Unravelling the role of the specificity loop for sugar preference
Jan Adam, Martina Pokorn, Charles Sabin, Edward P Mitchell, Anne Imberty, Michaela Wimmerov
BMC Structural Biology 2007, 7:36 (1June2007)
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Research article
High resolution crystal structure of PedB: a structural basis for the classification of pediocin-like immunity proteins
In-Kwon Kim, Min-Kyu Kim, Ji-Hye Kim, Hyung-Soon Yim, Sun-Shin Cha, Sa-Ouk Kang
BMC Structural Biology 2007, 7:35 (30May2007)
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Research article
The NMR structure of the murine DLC2 SAM domain reveals a variant fold that is similar to a four-helix bundle
Jamie J Kwan, Logan W Donaldson
BMC Structural Biology 2007, 7:34 (22May2007)
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Research article
Characterizing structural features of cuticle-degrading proteases from fungi by molecular modeling
Shu-Qun Liu, Zhao-Hui Meng, Jin-Kui Yang, Yun-Xin Fu, Ke-Qin Zhang
BMC Structural Biology 2007, 7:33 (18May2007)
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Research article
Structure of the dimeric N-glycosylated form of fungal  -N-acetylhexosaminidase revealed by computer modeling, vibrational spectroscopy, and biochemical studies
Rdiger Ettrich, Vladimr Kopeck Jr, Kate ina Hofbauerov, Vladimr Baumruk, Petr Novk, Petr Pompach, Petr Man, Ondej Plhal, Michal Kut, Natallia Kulik, Jan Sklen, Helena Ry lav, Vladimr Ken, Karel Bezouka
BMC Structural Biology 2007, 7:32 (17May2007)
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Research article
Binding induced conformational changes of proteins correlate with their intrinsic fluctuations: a case study of antibodies
Ozlem Keskin
BMC Structural Biology 2007, 7:31 (17May2007)
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Research article
The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family
Julia D Burman, Clare EM Stevenson, R Gary Sawers, David M Lawson
BMC Structural Biology 2007, 7:30 (16May2007)
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Research article
X-ray sequence and crystal structure of luffaculin 1, a novel type 1 ribosome-inactivating protein
Xiaomin Hou, Minghuang Chen, Liqing Chen, Edward J Meehan, Jieming Xie, Mingdong Huang
BMC Structural Biology 2007, 7:29 (30April2007)
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Research article
Structure of -conotoxin BuIA: influences of disulfide connectivity on structural dynamics
Ai-Hua Jin, Hemma Brandstaetter, Simon T Nevin, Chia Chia Tan, Richard J Clark, David J Adams, Paul F Alewood, David J Craik, Norelle L Daly
BMC Structural Biology 2007, 7:28 (20April2007)
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Research article
Homology modeling of major intrinsic proteins in rice, maize and Arabidopsis: comparative analysis of transmembrane helix association and aromatic/arginine selectivity filters
Anjali Bansal, Ramasubbu Sankararamakrishnan
BMC Structural Biology 2007, 7:27 (19April2007)
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Research article
Quaternary structure of Artemia haemoglobin II: analysis of T and C polymer alignment and interpolymer interface
David T Chyou, Vincent L Rawle, Clive NA Trotman
BMC Structural Biology 2007, 7:26 (18April2007)
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Methodology article
Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs
Ke Chen, Lukasz A Kurgan, Jishou Ruan
BMC Structural Biology 2007, 7:25 (16April2007)
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Research article
A previously unobserved conformation for the human Pex5p receptor suggests roles for intrinsic flexibility and rigid domain motions in ligand binding
Will A Stanley, Niko V Pursiainen, Elspeth F Garman, Andr H Juffer, Matthias Wilmanns, Petri Kursula
BMC Structural Biology 2007, 7:24 (11April2007)
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Research article
Protein homologous cores and loops: important clues to evolutionary relationships between structurally similar proteins
Thomas Madej, Anna R Panchenko, Jie Chen, Stephen H Bryant
BMC Structural Biology 2007, 7:23 (10April2007)
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Research article
The high-resolution NMR structure of the R21A Spc-SH3:P41 complex: Understanding the determinants of binding affinity by comparison with Abl-SH3
Salvador Casares, Eiso AB, Henk Eshuis, Obdulio Lopez-Mayorga, Nico AJ van Nuland, Francisco Conejero-Lara
BMC Structural Biology 2007, 7:22 (2April2007)
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Research article
Conformational study of the protegrin-1 (PG-1) dimer interaction with lipid bilayers and its effect
Hyunbum Jang, Buyong Ma, Ruth Nussinov
BMC Structural Biology 2007, 7:21 (2April2007)
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Research article
Structure, substrate recognition and reactivity of Leishmania major mevalonate kinase
Tanja Sgraja, Terry K Smith, William N Hunter
BMC Structural Biology 2007, 7:20 (30March2007)
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Research article
Atomic hydration potentials using a Monte Carlo Reference State (MCRS) for protein solvation modeling
Sergei V Rakhmanov, Vsevolod J Makeev
BMC Structural Biology 2007, 7:19 (30March2007)
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Research article
Mechanisms for stabilisation and the maintenance of solubility in proteins from thermophiles
Richard B Greaves, Jim Warwicker
BMC Structural Biology 2007, 7:18 (29March2007)
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Research article
On the origin of the histone fold
Vikram Alva, Moritz Ammelburg, Johannes Sding, Andrei N Lupas
BMC Structural Biology 2007, 7:17 (28March2007)
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Research article
Binding of Sudan II and IV to lecithin liposomes and E. coli membranes: insights into the toxicity of hydrophobic azo dyes
Lu Li, Hong-Wen Gao, Jiao-Rong Ren, Ling Chen, Yu-Cheng Li, Jian-Fu Zhao, He-Ping Zhao, Yuan Yuan
BMC Structural Biology 2007, 7:16 (27March2007)
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Research article
Scoring predictive models using a reduced representation of proteins: model and energy definition
Federico Fogolari, Lidia Pieri, Agostino Dovier, Luca Bortolussi, Gilberto Giugliarelli, Alessandra Corazza, Gennaro Esposito, Paolo Viglino
BMC Structural Biology 2007, 7:15 (23March2007)
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Research article
Tyr66 acts as a conformational switch in the closed-to-open transition of the SHP-2 N-SH2-domain phosphotyrosine-peptide binding cleft
Olgun Guvench, Cheng-Kui Qu, Alexander D MacKerell Jr
BMC Structural Biology 2007, 7:14 (22March2007)
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Software
Rappertk: a versatile engine for discrete restraint-based conformational sampling of macromolecules
Swanand P Gore, Anjum M Karmali, Tom L Blundell
BMC Structural Biology 2007, 7:13 (21March2007)
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Research article
Protein structure prediction by all-atom free-energy refinement
Abhinav Verma, Wolfgang Wenzel
BMC Structural Biology 2007, 7:12 (19March2007)
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Research article
Crystal structures of an Extracytoplasmic Solute Receptor from a TRAP transporter in its open and closed forms reveal a helix-swapped dimer requiring a cation for -keto acid binding
Sophie Gonin, Pascal Arnoux, Bndicte Pierru, Jrme Lavergne, Batrice Alonso, Monique Sabaty, David Pignol
BMC Structural Biology 2007, 7:11 (15March2007)
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Research article
Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
Daniel J Ferraro, Eric N Brown, Chi-Li Yu, Rebecca E Parales, David T Gibson, S Ramaswamy
BMC Structural Biology 2007, 7:10 (9March2007)
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Research article
Evaluation of the structural quality of modeled proteins by using globularity criteria
Susan Costantini, Angelo M Facchiano, Giovanni Colonna
BMC Structural Biology 2007, 7:9 (9March2007)
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Research article
Structure and characterization of a novel chicken biotin-binding protein A (BBP-A)
Vesa P Hytnen, Juha AE M tt, Einari A Niskanen, Juhani Huuskonen, Kaisa J Helttunen, Katrin K Halling, Henri R Nordlund, Kari Rissanen, Mark S Johnson, Tiina A Salminen, Markku S Kulomaa, Olli H Laitinen, Tomi T Airenne
BMC Structural Biology 2007, 7:8 (7March2007)
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Research article
Distinct energetics and closing pathways for DNA polymerase with 8-oxoG template and different incoming nucleotides
Yanli Wang, Tamar Schlick
BMC Structural Biology 2007, 7:7 (21February2007)
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Research article
A silent H-bond can be mutationally activated for high-affinity interaction of BMP-2 and activin type IIB receptor
Dionys Weber, Alexander Kotzsch, Joachim Nickel, Stefan Harth, Axel Seher, Uwe Mueller, Walter Sebald, Thomas D Mueller
BMC Structural Biology 2007, 7:6 (12February2007)
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Research article
Monte Carlo-energy minimization of correolide in the Kv1.3 channel: possible role of potassium ion in ligand-receptor interactions
Iva Bruhova, Boris S Zhorov
BMC Structural Biology 2007, 7:5 (29January2007)
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Research article
Energetics of the protein-DNA-water interaction
Francesca Spyrakis, Pietro Cozzini, Chiara Bertoli, Anna Marabotti, Glen E Kellogg, Andrea Mozzarelli
BMC Structural Biology 2007, 7:4 (10January2007)
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Research article
Occurrence of protein structure elements in conserved sequence regions
Einat Sitbon, Shmuel Pietrokovski
BMC Structural Biology 2007, 7:3 (9January2007)
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Methodology article
A generalized analysis of hydrophobic and loop clusters within globular protein sequences
Richard Eudes, Khanh Le Tuan, Jean Delettr, Jean-Paul Mornon, Isabelle Callebaut
BMC Structural Biology 2007, 7:2 (8January2007)
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Research article
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network
Adeel Malik, Shandar Ahmad
BMC Structural Biology 2007, 7:1 (3January2007)
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