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1.
Identification of differences in microRNA transcriptomes between porcine oxidative and glycolytic skeletal muscles
Yingkai Liu, Mingzhou Li, Jideng Ma, Jie Zhang, Chaowei Zhou, Tao Wang, Xiaolian Gao, Xuewei Li BMC Molecular Biology 2013, 14 :7 (18 February 2013)
Abstract | Provisional PDF
| PubMed
2.
Clock-controlled mir-142-3p can target its activator, Bmal1
Xiaochao Tan, Peng Zhang, Lan Zhou, Bin Yin, Hui Pan, Xiaozhong Peng BMC Molecular Biology 2012, 13 :27 (7 September 2012)
Abstract | Full text | PDF | PubMed
3.
Structure-function analysis of Methanobacterium thermoautotrophicum RNA ligase – engineering a thermostable ATP independent enzyme
Alexander M Zhelkovsky, Larry A McReynolds BMC Molecular Biology 2012, 13 :24 (18 July 2012)
Abstract | Full text | PDF | PubMed
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Editor’s summary
Mutation of a single amino acid residue in the Methanobacterium thermoautotrophicum RNA ligase results in ATP-independent ligase activity at high temperatures, suggesting that this RNA ligase could be a useful tool for RNA ligation experiments.
4.
An evaluation of oligonucleotide-based therapeutic strategies for polyQ diseases
Agnieszka Fiszer, Marta Olejniczak, Pawel M Switonski, Joanna P Wroblewska, Joanna Wisniewska-Kruk, Agnieszka Mykowska, Wlodzimierz J Krzyzosiak BMC Molecular Biology 2012, 13 :6 (7 March 2012)
Abstract | Full text | PDF | PubMed | F1000 Biology
5.
Transcriptional activation of microRNA-34a by NF-kappa B in human esophageal cancer cells
Juan Li, Kai Wang, Xuedan Chen, Hui Meng, Min Song, Yan Wang, Xueqing Xu, Yun Bai BMC Molecular Biology 2012, 13 :4 (31 January 2012)
Abstract | Full text | PDF | PubMed
6.
Profile of small interfering RNAs from cotton plants infected with the polerovirus Cotton leafroll dwarf virus
Tatiane F Silva, Elisson AC Romanel, Roberto RS Andrade, Laurent Farinelli, Magne Østerås, Cécile Deluen, Régis L Corrêa, Carlos EG Schrago, Maite FS Vaslin BMC Molecular Biology 2011, 12 :40 (24 August 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
7.
Transcripts that associate with the RNA binding protein, DEAD-END (DND1), in embryonic stem (ES) cells
Rui Zhu, Michelina Iacovino, Elisabeth Mahen, Michael Kyba, Angabin Matin BMC Molecular Biology 2011, 12 :37 (18 August 2011)
Abstract | Full text | PDF | PubMed
8.
The effects of stem length and core placement on shRNA activity
Glen J Mcintyre, Yi-Hsin Yu, Mehnaaz Lomas, Gregory C Fanning BMC Molecular Biology 2011, 12 :34 (8 August 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
9.
Analysis of the regulation of fatty acid binding protein 7 expression in human renal carcinoma cell lines
Naohisa Takaoka, Tatsuya Takayama, Takumi Teratani, Takayuki Sugiyama, Soichi Mugiya, Seiichiro Ozono BMC Molecular Biology 2011, 12 :31 (19 July 2011)
Abstract | Full text | PDF | PubMed
10.
Liposome-based DNA carriers may induce cellular stress response and change gene expression pattern in transfected cells
Anna Fiszer-Kierzkowska, Natalia Vydra, Aleksandra Wysocka-Wycisk, Zuzana Kronekova, Michał Jarząb, Katarzyna Marta Lisowska, Zdzisław Krawczyk BMC Molecular Biology 2011, 12 :27 (10 June 2011)
Abstract | Full text | PDF | PubMed
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Editor’s summary
Transfection of cells with liposome-based formulations may not be suitable for functional studies of heat shock promoters as treatment with this class of DNA carriers induces cellular stress and unintended changes in global gene expression.
11.
Clarifying mammalian RISC assembly in vitro
Grace S Tan, Barry G Garchow, Xuhang Liu, David Metzler, Marianthi Kiriakidou BMC Molecular Biology 2011, 12 :19 (29 April 2011)
Abstract | Full text | PDF | PubMed
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Editor’s summary
The in vitro formation of mammalian RNA induced silencing complex (RISC) using purified proteins indicates that Argonaute and Dicer are the only factors required for the pre-miRNA processing and loading of the complex.
12.
Northern blotting analysis of microRNAs, their precursors and RNA interference triggers
Edyta Koscianska, Julia Starega-Roslan, Lukasz J Sznajder, Marta Olejniczak, Paulina Galka-Marciniak, Wlodzimierz J Krzyzosiak BMC Molecular Biology 2011, 12 :14 (11 April 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
13.
Two-step cleavage of hairpin RNA with 5' overhangs by human DICER
Yoshinari Ando, Yoshiko Maida, Ayako Morinaga, Alexander M Burroughs, Ryuichiro Kimura, Joe Chiba, Harukazu Suzuki, Kenkichi Masutomi, Yoshihide Hayashizaki BMC Molecular Biology 2011, 12 :6 (9 February 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
14.
Strand-specific transcriptome profiling with directly labeled RNA on genomic tiling microarrays
Wen-Han Yu, Hedda Høvik, Ingar Olsen, Tsute Chen BMC Molecular Biology 2011, 12 :3 (14 January 2011)
Abstract | Full text | PDF | PubMed
15.
TEAD1-dependent expression of the FoxO3a gene in mouse skeletal muscle
Haifang Qiu, Fengli Wang, Chuxin Liu, Xuewen Xu, Bang Liu BMC Molecular Biology 2011, 12 :1 (7 January 2011)
Abstract | Full text | PDF | PubMed
16.
A thymus-specific noncoding RNA, Thy-ncR1, is a cytoplasmic riboregulator of MFAP4 mRNA in immature T-cell lines
Kazuma Aoki, Akira Harashima, Miho Sano, Takahide Yokoi, Shuji Nakamura, Masayoshi Kibata, Tetsuro Hirose BMC Molecular Biology 2010, 11 :99 (16 December 2010)
Abstract | Full text | PDF | PubMed
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Editor’s summary
The novel thymus-specific noncoding RNA Thy-ncR1, whose precursor exhibits complex alternative splicing patterns, has a cytoplasmic localization and functions as a riboregulator of mRNA stability during a specific stage of T-cells maturation.
17.
Structure and expression of two nuclear receptor genes in marsupials: insights into the evolution of the antisense overlap between the α -thyroid hormone receptor and Rev-erbα
Brandon C Rindfleisch, M Scott Brown, John L VandeBerg, Stephen H Munroe BMC Molecular Biology 2010, 11 :97 (10 December 2010)
Abstract | Full text | PDF | PubMed
18.
Overexpression of miR-128 specifically inhibits the truncated isoform of NTRK3 and upregulates BCL2 in SH-SY5Y neuroblastoma cells
Monica Guidi, Margarita Muiños-Gimeno, Birgit Kagerbauer, Eulàlia Martí, Xavier Estivill, Yolanda Espinosa-Parrilla BMC Molecular Biology 2010, 11 :95 (10 December 2010)
Abstract | Full text | PDF | PubMed
19.
Cell- and region-specific miR30-based gene knock-down with temporal control in the rat brain
Beihui Liu, Haibo Xu, Julian FR Paton, Sergey Kasparov BMC Molecular Biology 2010, 11 :93 (6 December 2010)
Abstract | Full text | PDF | PubMed
20.
A direct comparison of strategies for combinatorial RNA interference
Luke S Lambeth, Nick J Van Hateren, Stuart A Wilson, Venugopal Nair BMC Molecular Biology 2010, 11 :77 (11 October 2010)
Abstract | Full text | PDF | PubMed
21.
The chicken miR-150 targets the avian orthologue of the functional zebrafish MYB 3'UTR target site
Audrey Guillon-Munos, Ginette Dambrine, Nicolas Richerioux, Damien Coupeau, Benoît Muylkens, Denis Rasschaert BMC Molecular Biology 2010, 11 :67 (2 September 2010)
Abstract | Full text | PDF | PubMed
22.
New miRNA labeling method for bead-based quantification
Alberto Biscontin, Silvia Casara, Stefano Cagnin, Lucia Tombolan, Angelo Rosolen, Gerolamo Lanfranchi, Cristiano De Pittà BMC Molecular Biology 2010, 11 :44 (16 June 2010)
Abstract | Full text | PDF | PubMed
23.
Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development
Weiwu Jin, Michael V Dodson, Stephen S Moore, John A Basarab, Le Luo Guan BMC Molecular Biology 2010, 11 :29 (27 April 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
24.
In-depth sequencing of the siRNAs associated with peach latent mosaic viroid infection
François Bolduc, Christopher Hoareau, Patrick St-Pierre, Jean-Pierre Perreault BMC Molecular Biology 2010, 11 :16 (16 February 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
25.
Identification of endogenous control genes for normalisation of real-time quantitative PCR data in colorectal cancer
Elrasheid AH Kheirelseid, Kah Chang, John Newell, Michael J Kerin, Nicola Miller BMC Molecular Biology 2010, 11 :12 (1 February 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central