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Identification of an NF-κB p50/p65-responsive site in the human MIR155HG promoter
Ryan C Thompson, Iosif Vardinogiannis, Thomas D Gilmore BMC Molecular Biology 2013, 14:24 (23 September 2013)
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3′ terminal diversity of MRP RNA and other human noncoding RNAs revealed by deep sequencing
Katherine C Goldfarb, Thomas R Cech BMC Molecular Biology 2013, 14:23 (21 September 2013)
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VprBP (DCAF1): a promiscuous substrate recognition subunit that incorporates into both RING-family CRL4 and HECT-family EDD/UBR5 E3 ubiquitin ligases
Tadashi Nakagawa, Koushik Mondal, Patrick C Swanson BMC Molecular Biology 2013, 14:22 (13 September 2013)
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Reference loci for RT-qPCR analysis of differentiating human embryonic stem cells
Liesbeth Vossaert, Thomas O’Leary, Christophe Van Neste, Björn Heindryckx, Jo Vandesompele, Petra De Sutter, Dieter Deforce BMC Molecular Biology 2013, 14:21 (12 September 2013)
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Pseudo attP sites in favor of transgene integration and expression in cultured porcine cells identified by streptomyces phage phiC31 integrase
Yanzhen Bi, Ximei Liu, Long Zhang, Changwei Shao, Zhuo Ma, Zaidong Hua, Liping Zhang, Li Li, Wenjun Hua, Hongwei Xiao, Qingxin Wei, Xinmin Zheng BMC Molecular Biology 2013, 14:20 (8 September 2013)
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Molecular cloning and RNA interference-mediated functional characterization of a Halloween gene spook in the white-backed planthopper Sogatella furcifera
Shuang Jia, Pin-Jun Wan, Li-Tao Zhou, Li-Li Mu, Guo-Qing Li BMC Molecular Biology 2013, 14:19 (4 September 2013)
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A plasmid toolkit for cloning chimeric cDNAs encoding customized fusion proteins into any Gateway destination expression vector
Raquel Buj, Noa Iglesias, Anna M Planas, Tomàs Santalucía BMC Molecular Biology 2013, 14:18 (20 August 2013)
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Three-stage biochemical selection: cloning of prototype class IIS/IIC/IIG restriction endonuclease-methyltransferase TsoI from the thermophile Thermus scotoductus
Piotr M Skowron, Jolanta Vitkute, Danute Ramanauskaite, Goda Mitkaite, Joanna Jezewska-Frackowiak, Joanna Zebrowska, Agnieszka Zylicz-Stachula, Arvydas Lubys BMC Molecular Biology 2013, 14:17 (6 August 2013)
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APOBEC3 inhibits DEAD-END function to regulate microRNA activity
Sara Ali, Namrata Karki, Chitralekha Bhattacharya, Rui Zhu, Donna A MacDuff, Mark D Stenglein, April J Schumacher, Zachary L Demorest, Reuben S Harris, Angabin Matin, Sita Aggarwal BMC Molecular Biology 2013, 14:16 (26 July 2013)
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Loss of CARM1 is linked to reduced HuR function in replicative senescence
Lijun Pang, Haiyan Tian, Na Chang, Jie Yi, Lixiang Xue, Bin Jiang, Myriam Gorospe, Xiaowei Zhang, Wengong Wang BMC Molecular Biology 2013, 14:15 (9 July 2013)
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Tip110 interacts with YB-1 and regulates each other’s function
Khalid Timani, Ying Liu, Johnny J He BMC Molecular Biology 2013, 14:14 (4 July 2013)
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How to perform RT-qPCR accurately in plant species? A case study on flower colour gene expression in an azalea (Rhododendron simsii hybrids) mapping population
Ellen De Keyser, Laurence Desmet, Erik Van Bockstaele, Jan De Riek BMC Molecular Biology 2013, 14:13 (24 June 2013)
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Identification of nucleotides and amino acids that mediate the interaction between ribosomal protein L30 and the SECIS element
Abby L Bifano, Tarik Atassi, Tracey Ferrara, Donna M Driscoll BMC Molecular Biology 2013, 14:12 (19 June 2013)
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Characterization of Stra8 in Southern catfish (Silurus meridionalis): evidence for its role in meiotic initiation
Ranran Dong, Shijie Yang, Jing Jiao, Tingru Wang, Hongjuan Shi, Linyan Zhou, Yaoguang Zhang, Deshou Wang BMC Molecular Biology 2013, 14:11 (22 May 2013)
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Screening and analysis of PoAkirin1 and two related genes in response to immunological stimulants in the Japanese flounder (Paralichthys olivaceus)
Chang-Geng Yang, Xian-Li Wang, Bo Zhang, Bing Sun, Shan-Shan Liu, Song-Lin Chen BMC Molecular Biology 2013, 14:10 (7 May 2013)
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Human single-stranded DNA binding proteins are essential for maintaining genomic stability
Nicholas W Ashton, Emma Bolderson, Liza Cubeddu, Kenneth J O’Byrne, Derek J Richard BMC Molecular Biology 2013, 14:9 (1 April 2013)
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Annual acknowledgement of manuscript reviewers
Christopher Morrey BMC Molecular Biology 2013, 14:8 (28 March 2013)
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Identification of differences in microRNA transcriptomes between porcine oxidative and glycolytic skeletal muscles
Yingkai Liu, Mingzhou Li, Jideng Ma, Jie Zhang, Chaowei Zhou, Tao Wang, Xiaolian Gao, Xuewei Li BMC Molecular Biology 2013, 14:7 (18 February 2013)
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Editor’s summary
Analysis of miRNA expression profiling between the porcine longissimus doris muscle and psoas major muscle using a deep sequencing approach suggests that miRNAs play essential roles in the phenotypic variations observed in these muscle fiber types.
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Single cell transcriptomic analysis of prostate cancer cells
Christopher J Welty, Ilsa Coleman, Roger Coleman, Bryce Lakely, Jing Xia, Shu Chen, Roman Gulati, Sandy R Larson, Paul H Lange, Bruce Montgomery, Peter S Nelson, Robert L Vessella, Colm Morrissey BMC Molecular Biology 2013, 14:6 (16 February 2013)
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Multiple tandem splicing silencer elements suppress aberrant splicing within the long exon 26 of the human Apolipoprotein B gene
Umasuthan Srirangalingam, Scott A Akker, Dennis Norman, Naveenan Navaratnam, Shern L Chew, Bernard Khoo BMC Molecular Biology 2013, 14:5 (7 February 2013)
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Editor’s summary
Pseudo splice sites are heterogeneously distributed along exon 26 of Apolipoprotein B and are repressed by multiple, tandem splicing silencers which may be key to maintaining integrity during RNA splicing and to the expression of APOB isoforms.
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Identification of a set of miRNAs differentially expressed in transiently TIA-depleted HeLa cells by genome-wide profiling
Carmen Sánchez-Jiménez, Isabel Carrascoso, Juan Barrero, José M Izquierdo BMC Molecular Biology 2013, 14:4 (6 February 2013)
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UtroUp is a novel six zinc finger artificial transcription factor that recognises 18 base pairs of the utrophin promoter and efficiently drives utrophin upregulation
Annalisa Onori, Cinzia Pisani, Georgios Strimpakos, Lucia Monaco, Elisabetta Mattei, Claudio Passananti, Nicoletta Corbi BMC Molecular Biology 2013, 14:3 (30 January 2013)
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The ICP22 protein selectively modifies the transcription of different kinetic classes of pseudorabies virus genes
Irma F Takács, Dóra Tombácz, Beáta Berta, István Prazsák, Nándor Póka, Zsolt Boldogkői BMC Molecular Biology 2013, 14:2 (29 January 2013)
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Drosophila MOF controls Checkpoint protein2 and regulates genomic stability during early embryogenesis
Sreerangam NCVL Pushpavalli, Arpita Sarkar, M Janaki Ramaiah, Debabani Roy Chowdhury, Utpal Bhadra, Manika Pal-Bhadra BMC Molecular Biology 2013, 14:1 (24 January 2013)
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Alternative splicing of the neurofibromatosis type 1 pre-mRNA is regulated by the muscleblind-like proteins and the CUG-BP and ELAV-like factors
Victoria A Fleming, Cuiyu Geng, Andrea N Ladd, Hua Lou BMC Molecular Biology 2012, 13:35 (10 December 2012)
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Editor’s summary
Muscleblind-like (MBNL) splicing proteins MBNL1 and MBNL2 positively regulate the inclusion of neurofibromatosis type 1 (NF1) exon 23a, and neighboring sequences together with the preferred binding sequence are required for optimal binding in vitro.
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