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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Andrea Bucceri
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| | BMC Molecular Biology, Volume 8 |
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Research article
 
Effects of mutations in SGS1 and in genes functionally related to SGS1 on inverted repeat-stimulated spontaneous unequal sister-chromatid exchange in yeast
Dilip K Nag, Steffany J Cavallo
BMC Molecular Biology 2007, 8:120 (31December2007)
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Research article
Checkpoint effects and telomere amplification during DNA re-replication in fission yeast
Katie L Mickle, Anna Oliva, Joel A Huberman, Janet Leatherwood
BMC Molecular Biology 2007, 8:119 (21December2007)
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Methodology article
RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: a comparison of column purification and magnetic bead-based technologies
Alfredo Ribeiro-Silva, Haiyu Zhang, Stefanie S Jeffrey
BMC Molecular Biology 2007, 8:118 (21December2007)
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Research article
Differential regulation of NAB corepressor genes in Schwann cells
Rajini Srinivasan, Sung-Wook Jang, Rebecca M Ward, Shrikesh Sachdev, Toshihiko Ezashi, John Svaren
BMC Molecular Biology 2007, 8:117 (20December2007)
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Research article
Regulation of heme oxygenase-1 mRNA deadenylation and turnover in NIH3T3 cells by nitrosative or alkylation stress
Veronica Leautaud, Bruce Demple
BMC Molecular Biology 2007, 8:116 (20December2007)
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Research article
The venom gland transcriptome of the Desert Massasauga Rattlesnake (Sistrurus catenatus edwardsii): towards an understanding of venom composition among advanced snakes (Superfamily Colubroidea)
Susanta Pahari, Stephen P Mackessy, R Manjunatha Kini
BMC Molecular Biology 2007, 8:115 (20December2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Identifying the most suitable endogenous control for determining gene expression in hearts from organ donors
Silvia P rez, Luis J Royo, Aurora Astudillo, Dolores Escudero, Francisco  lvarez, Aida Rodr guez, Enrique G mez, Jes s Otero
BMC Molecular Biology 2007, 8:114 (20December2007)
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Research article
Relative quantification of mRNA: comparison of methods currently used for real-time PCR data analysis
 tefan  iko , Alexandra Bukovsk , Juraj Koppel
BMC Molecular Biology 2007, 8:113 (20December2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Checkpoint independence of most DNA replication origins in fission yeast
Katie L Mickle, Sunita Ramanathan, Adam Rosebrock, Anna Oliva, Amna Chaudari, Chulee Yompakdee, Donna Scott, Janet Leatherwood, Joel A Huberman
BMC Molecular Biology 2007, 8:112 (19December2007)
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Research article
The 3' untranslated region of human Cyclin-Dependent Kinase 5 Regulatory subunit 1 contains regulatory elements affecting transcript stability
Silvia Moncini, Annamaria Bevilacqua, Marco Venturin, Claudia Fallini, Antonia Ratti, Angelo Nicolin, Paola Riva
BMC Molecular Biology 2007, 8:111 (3December2007)
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Research article
Tissue factor pathway inhibitor-2 was repressed by CpG hypermethylation through inhibition of KLF6 binding in highly invasive breast cancer cells
Hongshen Guo, Yifeng Lin, Hongwei Zhang, Juan Liu, Nong Zhang, Yiming Li, Desheng Kong, Qiqun Tang, Duan Ma
BMC Molecular Biology 2007, 8:110 (3December2007)
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Research article
Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene
Maayan Amit, Noa Sela, Hadas Keren, Ze'ev Melamed, Inna Muler, Noam Shomron, Shai Izraeli, Gil Ast
BMC Molecular Biology 2007, 8:109 (29November2007)
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Research article
Long-term stability of RNA in post-mortem bovine skeletal muscle, liver and subcutaneous adipose tissues
Bojlul Bahar, Frank J Monahan, Aidan P Moloney, Olaf Schmidt, David E MacHugh, Torres Sweeney
BMC Molecular Biology 2007, 8:108 (29November2007)
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Methodology article
Evaluation and validation of candidate endogenous control genes for real-time quantitative PCR studies of breast cancer
Roisin E McNeill, Nicola Miller, Michael J Kerin
BMC Molecular Biology 2007, 8:107 (27November2007)
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Research article
Human NCU-G1 can function as a transcription factor and as a nuclear receptor co-activator
Knut R Steffensen, Mariam Bouzga, Frode Skjeldal, Cecilie Kasi, Almira Karahasan, Vilborg Matre, Oddmund Bakke, Sylvain Gurin, Winnie Eskild
BMC Molecular Biology 2007, 8:106 (16November2007)
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Research article
Alternative polyadenylation signals and promoters act in concert to control tissue-specific expression of the Opitz Syndrome gene MID1
Jennifer Winter, Melanie Kunath, Stefan Roepcke, Sven Krause, Rainer Schneider, Susann Schweiger
BMC Molecular Biology 2007, 8:105 (15November2007)
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Research article
The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate:sugar phosphotransferase system (PTS) in Corynebacterium glutamicum
Lars Gaigalat, Jan-Philip Schl ter, Michelle Hartmann, Sascha Mormann, Andreas Tauch, Alfred Phler, J rn Kalinowski
BMC Molecular Biology 2007, 8:104 (15November2007)
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Methodology article
Detection of short repeated genomic sequences on metaphase chromosomes using padlock probes and target primed rolling circle DNA synthesis
Jakob S Lohmann, Magnus Stougaard, J rn Koch
BMC Molecular Biology 2007, 8:103 (13November2007)
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Research article
Localization of TFIIB binding regions using serial analysis of chromatin occupancy
Gregory S Yochum, Veena Rajaraman, Ryan Cleland, Shannon McWeeney
BMC Molecular Biology 2007, 8:102 (12November2007)
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Research article
Hepatoma derived growth factor binds DNA through the N-terminal PWWP domain
Jun Yang, Allen D Everett
BMC Molecular Biology 2007, 8:101 (31October2007)
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Research article
Translation initiation region sequence preferences in Escherichia coli
Vladimir Vimberg, Age Tats, Maido Remm, Tanel Tenson
BMC Molecular Biology 2007, 8:100 (31October2007)
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Research article
The Varicella-Zoster Virus Immediate-Early 63 protein affects chromatin controlled gene transcription in a cell-type dependent manner
Lionel Habran, Nadia El Mjiyad, Emmanuel Di Valentin, Catherine Sadzot-Delvaux, Sbastien Bontems, Jacques Piette
BMC Molecular Biology 2007, 8:99 (30October2007)
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Methodology article
A versatile approach to multiple gene RNA interference using microRNA-based short hairpin RNAs
Xiaocui Zhu, Leah A Santat, Mi Sook Chang, Jamie Liu, Joelle R Zavzavadjian, Estelle A Wall, Christine Kivork, Melvin I Simon, Iain DC Fraser
BMC Molecular Biology 2007, 8:98 (30October2007)
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Research article
Extensive ssDNA end formation at DNA double-strand breaks in non-homologous end-joining deficient cells during the S phase
Karin H Karlsson, Bo Stenerlw
BMC Molecular Biology 2007, 8:97 (26October2007)
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Research article
Regulation of poly(ADP-ribose) polymerase-1 (PARP-1) gene expression through the post-translational modification of Sp1: a nuclear target protein of PARP-1
Karine Zaniolo, Serge Desnoyers, Steeve Leclerc, Sylvain L Gurin
BMC Molecular Biology 2007, 8:96 (25October2007)
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Research article
Expression and characterization of novel ovine orthologs of bovine placental prolactin-related proteins
Koichi Ushizawa, Toru Takahashi, Misa Hosoe, Katsuhiro Ohkoshi, Kazuyoshi Hashizume
BMC Molecular Biology 2007, 8:95 (25October2007)
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Research article
Control of gag-pol gene expression in the Candida albicans retrotransposon Tca2
Elaine M Forbes, Si n R Nieduszynska, Fiona K Brunton, Joanne Gibson, L Anne Glover, Ian Stansfield
BMC Molecular Biology 2007, 8:94 (25October2007)
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Methodology article
Detection limits of several commercial reverse transcriptase enzymes: impact on the low- and high-abundance transcript levels assessed by quantitative RT-PCR
Jean-Philippe Levesque-Sergerie, Mathieu Duquette, Catherine Thibault, Louis Delbecchi, Nathalie Bissonnette
BMC Molecular Biology 2007, 8:93 (22October2007)
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Research article
Hfq stimulates the activity of the CCA-adding enzyme
Marion Scheibe, Sonja Bonin, Eliane Hajnsdorf, Heike Betat, Mario Mrl
BMC Molecular Biology 2007, 8:92 (18October2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment]
Methodology article
The use of Multiple Displacement Amplified DNA as a control for Methylation Specific PCR, Pyrosequencing, Bisulfite Sequencing and Methylation-Sensitive Restriction Enzyme PCR
Simon Hughes, J Louise Jones
BMC Molecular Biology 2007, 8:91 (16October2007)
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Research article
ADAM15 gene structure and differential alternative exon use in human tissues
Iivari Kleino, Rebekka M Ortiz, Ari-Pekka J Huovila
BMC Molecular Biology 2007, 8:90 (15October2007)
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Research article
Transcriptional regulation of human eosinophil RNases by an evolutionary- conserved sequence motif in primate genome
Hsiu-Yu Wang, Hao-Teng Chang, Tun-Wen Pai, Chung-I Wu, Yuan-Hung Lee, Yen-Hsin Chang, Hsiu-Ling Tai, Chuan-Yi Tang, Wei-Yao Chou, Margaret Dah-Tsyr Chang
BMC Molecular Biology 2007, 8:89 (11October2007)
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Research article
Characterization of a novel bifunctional mutant of staphylokinase with platelet-targeted thrombolysis and antiplatelet aggregation activities
Hongshan Chen, Wei Mo, Huabo Su, Yanling Zhang, Houyan Song
BMC Molecular Biology 2007, 8:88 (7October2007)
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Research article
An unusual S-adenosylmethionine synthetase gene from dinoflagellate is methylated
Percy Ho, KF Kong, YH Chan, Jimmy SH Tsang, Joseph TY Wong
BMC Molecular Biology 2007, 8:87 (4October2007)
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Research article
Systematic identification of non-coding RNA 2,2,7-trimethylguanosine cap structures in Caenorhabditis elegans
Dong Jia, Lun Cai, Housheng He, Geir Skogerb, Tiantian Li, Muhammad Nauman Aftab, Runsheng Chen
BMC Molecular Biology 2007, 8:86 (29September2007)
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Research article
Reciprocal regulation of p63 by C/EBP delta in human keratinocytes
Serena Borrelli, Barbara Testoni, Maurizio Callari, Daniela Alotto, Carlotta Castagnoli, Rose-Anne Romano, Satrajit Sinha, Alessandra M Vigan , Roberto Mantovani
BMC Molecular Biology 2007, 8:85 (28September2007)
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Research article
Functional analysis of human mutations in homeodomain transcription factor PITX3
Satoru Sakazume, Elena Sorokina, Yoshiki Iwamoto, Elena V Semina
BMC Molecular Biology 2007, 8:84 (21September2007)
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Research article
Alternative splicing of c-fos pre-mRNA: contribution of the rates of synthesis and degradation to the copy number of each transcript isoform and detection of a truncated c-Fos immunoreactive species
Juan Jurado, Carlos A Fuentes-Almagro, Mara J Prieto-lamo, Carmen Pueyo
BMC Molecular Biology 2007, 8:83 (21September2007)
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Research article
Structural and functional analysis of the Entamoeba histolytica EhrabB gene promoter
Mnica Romero-Daz, Consuelo Gmez, Israel Lpez-Reyes, Mximo B Martnez, Esther Orozco, Mario A Rodrguez
BMC Molecular Biology 2007, 8:82 (20September2007)
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Research article
XRCC1 and PCNA are loading platforms with distinct kinetic properties and different capacities to respond to multiple DNA lesions
Oliver Mortusewicz, Heinrich Leonhardt
BMC Molecular Biology 2007, 8:81 (19September2007)
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Methodology article
Construction and evaluation of multisite recombinatorial (Gateway) cloning vectors for Gram-positive bacteria
Tania M Perehinec, Saara NA Qazi, Sanyasi R Gaddipati, Vyvyan Salisbury, Catherine ED Rees, Philip J Hill
BMC Molecular Biology 2007, 8:80 (19September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Prediction and preliminary validation of oncogene regulation by miRNAs
Edyta Koscianska, Vesselin Baev, Konstantinia Skreka, Katerina Oikonomaki, Ventsislav Rusinov, Martin Tabler, Kriton Kalantidis
BMC Molecular Biology 2007, 8:79 (18September2007)
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Research article
GATA elements control repression of cardiac troponin I promoter activity in skeletal muscle cells
Raffaella Di Lisi, Anne Picard, Simonetta Ausoni, Stefano Schiaffino
BMC Molecular Biology 2007, 8:78 (17September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Software
PlasmaDNA: a free, cross-platform plasmid manipulation program for molecular biology laboratories
Alexandre Angers-Loustau, Jeffrey Rainy, Kirmo Wartiovaara
BMC Molecular Biology 2007, 8:77 (17September2007)
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Research article
HAP1 can sequester a subset of TBP in cytoplasmic inclusions via specific interaction with the conserved TBPCORE
Justin R Prigge, Edward E Schmidt
BMC Molecular Biology 2007, 8:76 (14September2007)
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Research article
The promoter regions of the Myb-regulated Adora2B and Mcm4 genes co-localize with origins of DNA replication
Holger Gundelach, Daniel Braas, Karl-Heinz Klempnauer
BMC Molecular Biology 2007, 8:75 (6September2007)
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Research article
Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential
Frdric Chalmel, Thierry Lveillard, Cline Jaillard, Aurlie Lardenois, Naomi Berdugo, Emmanuelle Morel, Patrice Koehl, George Lambrou, Arne Holmgren, Jos A Sahel, Olivier Poch
BMC Molecular Biology 2007, 8:74 (31August2007)
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Research article
Site-specific acetylation of ISWI by GCN5
Roger Ferreira, Anton Eberharter, Tiziana Bonaldi, Mariacristina Chioda, Axel Imhof, Peter B Becker
BMC Molecular Biology 2007, 8:73 (30August2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Characterization of novel transforming growth factor-beta type I receptors found in malignant pleural effusion tumor cells
Kuo-Li Chen, Wan-Hsin Liu, Yi-Yuan Yang, Sy-Jye C Leu, Neng-Yao Shih
BMC Molecular Biology 2007, 8:72 (17August2007)
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Research article
Inactivation of NMD increases viability of sup45 nonsense mutants in Saccharomyces cerevisiae
Svetlana Chabelskaya, Valentina Gryzina, Svetlana Moskalenko, Catherine Le Goff, Galina Zhouravleva
BMC Molecular Biology 2007, 8:71 (16August2007)
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Research article
Alternative splicing of human peroxisome proliferator-activated receptor delta (PPARdelta):effects on translation efficiency and trans-activation ability
Kerstin Lundell, Petra Thulin, Anders Hamsten, Ewa Ehrenborg
BMC Molecular Biology 2007, 8:70 (16August2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Enzymes involved in DNA ligation and end-healing in the radioresistant bacterium Deinococcus radiodurans
Melanie Blasius, Rebecca Buob, Igor V Shevelev, Ulrich Hubscher
BMC Molecular Biology 2007, 8:69 (16August2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Extraordinary diversity among members of the large gene family, 185/333, from the purple sea urchin, Strongylocentrotus purpuratus
Katherine M Buckley, L Courtney Smith
BMC Molecular Biology 2007, 8:68 (15August2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Methodology article
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
Ann-Britt Nygard, Claus B Jrgensen, Susanna Cirera, Merete Fredholm
BMC Molecular Biology 2007, 8:67 (15August2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Inactivation of nucleolin leads to nucleolar disruption, cell cycle arrest and defects in centrosome duplication
Iva Ugrinova, Karine Monier, Corinne Ivaldi, Marc Thiry, Sbastien Storck, Fabien Mongelard, Philippe Bouvet
BMC Molecular Biology 2007, 8:66 (10August2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Expression and functional analysis of TaASY1 during meiosis of bread wheat (Triticum aestivum)
Scott A Boden, Nadim Shadiac, Elise J Tucker, Peter Langridge, Jason A Able
BMC Molecular Biology 2007, 8:65 (4August2007)
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Research article
A flow cytometry technique to study intracellular signals NF- B and STAT3 in peripheral blood mononuclear cells
Sandrine Lafarge, Hind Hamzeh-Cognasse, Patricia Chavarin, Christian Genin, Olivier Garraud, Fabrice Cognasse
BMC Molecular Biology 2007, 8:64 (31July2007)
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Research article
HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR
Zachary Klase, Prachee Kale, Rafael Winograd, Madhur V Gupta, Mohammad Heydarian, Reem Berro, Timothy McCaffrey, Fatah Kashanchi
BMC Molecular Biology 2007, 8:63 (30July2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Medicine] [Cited on BioMed Central]
Research article
Identification of new reference genes for the normalisation of canine osteoarthritic joint tissue transcripts from microarray data
Lindsey J Maccoux, Dylan N Clements, Fiona Salway, Philip JR Day
BMC Molecular Biology 2007, 8:62 (25July2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Somatic CTG CAG repeat instability in a mouse model for myotonic dystrophy type 1 is associated with changes in cell nuclearity and DNA ploidy
Walther JAA van den Broek, Derick G Wansink, B Wieringa
BMC Molecular Biology 2007, 8:61 (23July2007)
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Research article
Hormonal and nutritional regulation of alternative CD36 transcripts in rat liver  a role for growth hormone in alternative exon usage
Louisa Cheung, Malin Andersen, Carolina Gustavsson, Jacob Odeberg, Leandro Fernndez-Prez, Gunnar Norstedt, Petra Tollet-Egnell
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