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1.

1715
Accesses

Review   Open Access Highly Accessed

Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology

Tsai-Tien Tseng, Brett M Tyler, João C Setubal BMC Microbiology 2009, 9(Suppl 1):S2 (19 February 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

2.

1009
Accesses

Research article   Open Access Highly Accessed

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

Diane O Inglis, Jonathan Binkley, Marek S Skrzypek, Martha B Arnaud, Gustavo C Cerqueira, Prachi Shah, Farrell Wymore, Jennifer R Wortman, Gavin Sherlock BMC Microbiology 2013, 13:91 (26 April 2013)

Abstract | Provisional PDF | PubMed

3.

996
Accesses

Research article   Open Access Highly Accessed

The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age

D Mariat, O Firmesse, F Levenez, VD Guimarăes, H Sokol, J Doré, G Corthier, J-P Furet BMC Microbiology 2009, 9:123 (9 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

4.

970
Accesses

Methodology article   Open Access Highly Accessed

Development of real-time PCR for detection of Mycoplasma hominis

Agata Baczynska, Helle F Svenstrup, Jens Fedder, Svend Birkelund, Gunna Christiansen BMC Microbiology 2004, 4:35 (6 September 2004)

Abstract | Full text | PDF | PubMed

5.

910
Accesses

Research article   Open Access Highly Accessed

Brucella 'HOOF-Prints': strain typing by multi-locus analysis of variable number tandem repeats (VNTRs)

Betsy J Bricker, Darla R Ewalt, Shirley M Halling BMC Microbiology 2003, 3:15 (11 July 2003)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A new technique enables different isolates of Brucella to be identified by their 'hypervariable octameric oligonucleotide finger-prints' and will aid epidemiological studies on the origin of Brucella outbreaks in livestock.

6.

890
Accesses

Research article   Open Access

MLVA genotyping of Chinese human Brucella melitensis biovar 1, 2 and 3 isolates

Hai Jiang, Mengguang Fan, Jingdiao Chen, Jingchuan Mi, Ruiping Yu, Hongyan Zhao, Dongri Piao, Changwen Ke, Xiaoling Deng, Guozhong Tian, Buyun Cui BMC Microbiology 2011, 11:256 (22 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

7.

864
Accesses

Research article   Open Access Highly Accessed

Analysis of a unique Clostridium botulinum strain from the Southern hemisphere producing a novel type E botulinum neurotoxin subtype

Brian H Raphael, Matthew Lautenschlager, Suzanne R Kalb, Laura I T de Jong, Michael Frace, Carolina Lúquez, John R Barr, Rafael A Fernández, Susan E Maslanka BMC Microbiology 2012, 12:245 (31 October 2012)

Abstract | Full text | PDF | PubMed

8.

855
Accesses

Research article   Open Access

Colonization strategies of Pseudomonas fluorescens Pf0-1: activation of soil-specific genes important for diverse and specific environments

Katila Varivarn, Lindsey A Champa, Mark W Silby, Eduardo A Robleto BMC Microbiology 2013, 13:92 (27 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

837
Accesses

Research article   Open Access

A proteomic investigation of Fusobacterium nucleatum alkaline-induced biofilms

Jactty Chew, Peter S Zilm, Janet M Fuss, Neville J Gully BMC Microbiology 2012, 12:189 (3 September 2012)

Abstract | Full text | PDF | PubMed

10.

813
Accesses

Research article   Open Access Highly Accessed

Diffusely adherent Escherichia coli strains isolated from children and adults constitute two different populations

Rosane Mansan-Almeida, Alex Pereira, Loreny Giugliano BMC Microbiology 2013, 13:22 (1 February 2013)

Abstract | Full text | PDF | PubMed

11.

801
Accesses

Research article   Open Access Highly Accessed

Toxicity of unsaturated fatty acids to the biohydrogenating ruminal bacterium, Butyrivibrio fibrisolvens

Margarida RG Maia, Lal C Chaudhary, Charles S Bestwick, Anthony J Richardson, Nest McKain, Tony R Larson, Ian A Graham, Robert J Wallace BMC Microbiology 2010, 10:52 (18 February 2010)

Abstract | Full text | PDF | PubMed

12.

798
Accesses

Research article   Open Access Highly Accessed

Shewanella oneidensis Hfq promotes exponential phase growth, stationary phase culture density, and cell survival

Christopher M Brennan, Meghan L Keane, Taylor M Hunt, Matthew T Goulet, Nicholas Q Mazzucca, Zachary Sexton, Taylor Mezoian, Katherine E Douglas, Jessica M Osborn, Brett J Pellock BMC Microbiology 2013, 13:33 (8 February 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Deletion of hfq, an RNA chaperone protein, in Shewanella oneidensis results in reduced growth rate and productivity of aerobic and anaerobic cultures, and compromises the bacterium’s metal-reduction capability potentially due to an increased sensitivity to oxidative stress.

13.

744
Accesses

Methodology article   Open Access Highly Accessed

Fast immunosensing technique to detect Legionella pneumophila in different natural and anthropogenic environments: comparative and collaborative trials

Begoña Bedrina, Sonia Macián, Inmaculada Solís, Roberto Fernández-Lafuente, Eva Baldrich, Guillermo Rodríguez BMC Microbiology 2013, 13:88 (22 April 2013)

Abstract | Full text | PDF | ePUB | PubMed | Cited on BioMed Central

14.

738
Accesses

Methodology article   Open Access Highly Accessed

Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts

Kendall J Martin, Paul T Rygiewicz BMC Microbiology 2005, 5:28 (18 May 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

15.

725
Accesses

Research article   Open Access

Characterization of a salt-induced DhAHP, a gene coding for alkyl hydroperoxide reductase, from the extremely halophilic yeast Debaryomyces hansenii

Hsiu-fung Chao, Yung-fu Yen, Maurice SB Ku BMC Microbiology 2009, 9:182 (28 August 2009)

Abstract | Full text | PDF | PubMed

16.

724
Accesses

Research article   Open Access Highly Accessed

Antibacterial activities of almond skins on cagA-positive and-negative clinical isolates of Helicobacter pylori

Carlo Bisignano, Angela Filocamo, Erminia La Camera, Sebastiana Zummo, Maria Fera, Giuseppina Mandalari BMC Microbiology 2013, 13:103 (9 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

17.

718
Accesses

Research article   Open Access

Characterization of a variant vlhA gene of Mycoplasma synoviae, strain WVU 1853, with a highly divergent haemagglutinin region

Awatef Béjaoui Khiari, Ibtissem Guériri, Radhia Ben Mohammed, Boutheina Ben Abdelmoumen Mardassi BMC Microbiology 2010, 10:6 (12 January 2010)

Abstract | Full text | PDF | PubMed

18.

716
Accesses

Research article   Open Access Highly Accessed

Assessment of bacterial diversity during composting of agricultural byproducts

Piyush Chandna, Lata Nain, Surender Singh, Ramesh Chander Kuhad BMC Microbiology 2013, 13:99 (7 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

19.

704
Accesses

Methodology article   Open Access Highly Accessed

Rapid plasmid replicon typing by real time PCR melting curve analysis

Maikel Boot, Susanne Raadsen, Paul HM Savelkoul, Christina Vandenbroucke-Grauls BMC Microbiology 2013, 13:83 (15 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

20.

693
Accesses

Research article   Open Access Highly Accessed

Factors associated with the isolation of Nontuberculous mycobacteria (NTM) from a large municipal water system in Brisbane, Australia

Rachel M Thomson, Robyn Carter, Carla Tolson, Chris Coulter, Flavia Huygens, Megan Hargreaves BMC Microbiology 2013, 13:89 (22 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

21.

675
Accesses

Research article   Open Access Highly Accessed

Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease

Lotta Nylund, Reetta Satokari, Janne Nikkilä, Mirjana Rajilić-Stojanović, Marko Kalliomäki, Erika Isolauri, Seppo Salminen, Willem M de Vos BMC Microbiology 2013, 13:12 (23 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Children with eczema harbour a greater diversity of microbes in the gut than those without, including an increased abundance of bacteria that are typically more common in adults, which may contribute to the perpetuation of the condition.

22.

640
Accesses

Methodology article   Open Access Highly Accessed

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

Gary D Wu, James D Lewis, Christian Hoffmann, Ying-Yu Chen, Rob Knight, Kyle Bittinger, Jennifer Hwang, Jun Chen, Ronald Berkowsky, Lisa Nessel, Hongzhe Li, Frederic D Bushman BMC Microbiology 2010, 10:206 (30 July 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

23.

626
Accesses

Research article   Open Access

Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia

Gvantsa Chanturia, Dawn N Birdsell, Merab Kekelidze, Ekaterine Zhgenti, George Babuadze, Nikoloz Tsertsvadze, Shota Tsanava, Paata Imnadze, Stephen M Beckstrom-Sternberg, James S Beckstrom-Sternberg, Mia D Champion, Shripad Sinari, Miklos Gyuranecz, Jason Farlow, Amanda H Pettus, Emily L Kaufman, Joseph D Busch, Talima Pearson, Jeffrey T Foster, Amy J Vogler, David M Wagner, Paul Keim BMC Microbiology 2011, 11:139 (17 June 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

24.

608
Accesses

Research article   Open Access Highly Accessed

Influence of arthritis-related protein (BBF01) on infectivity of Borrelia burgdorferi B31

Denise Imai, Kevin Holden, Eric M Velazquez, Sunlian Feng, Emir Hodzic, Stephen W Barthold BMC Microbiology 2013, 13:100 (7 May 2013)

Abstract | Provisional PDF | PubMed

25.

607
Accesses

Research article   Open Access Highly Accessed

Effect of avian influenza A H5N1 infection on the expression of microRNA-141 in human respiratory epithelial cells

Wai-Yip Lam, Apple Chung-Man Yeung, Karry Lei-Ka Ngai, Man-Shan Li, Ka-Fai To, Stephen Kwok-Wing Tsui, Paul Kay-Sheung Chan BMC Microbiology 2013, 13:104 (10 May 2013)

Abstract | Full text | PDF | PubMed

26.

605
Accesses

Research article   Open Access

Impact of agr dysfunction on virulence profiles and infections associated with a novel methicillin-resistant Staphylococcus aureus (MRSA) variant of the lineage ST1-SCCmec IV

Fabienne Antunes Ferreira, Raquel Rodrigues Souza, Bruno de Sousa Moraes, Ana Maria de Amorim Ferreira, Marco Antônio Américo, Sérgio Eduardo Longo Fracalanzza, José Nelson dos Santos Silva Couceiro, Agnes Marie Sá Figueiredo BMC Microbiology 2013, 13:93 (27 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

27.

604
Accesses

Research article   Open Access Highly Accessed

The effect of environmental conditions on expression of Bacteroides fragilis and Bacteroides thetaiotaomicron C10 protease genes

Roibeard F Thornton, Elizabeth C Murphy, Todd F Kagawa, Paul W O’Toole, Jakki C Cooney BMC Microbiology 2012, 12:190 (3 September 2012)

Abstract | Full text | PDF | PubMed

28.

595
Accesses

Research article   Open Access

Adaptive response to starvation in the fish pathogen Flavobacterium columnare: cell viability and ultrastructural changes

Covadonga R Arias, Stacey LaFrentz, Wenlong Cai, Oscar Olivares-Fuster BMC Microbiology 2012, 12:266 (19 November 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

29.

594
Accesses

Research article   Open Access

A functional VipA-VipB interaction is required for the type VI secretion system activity of Vibrio cholerae O1 strain A1552

Jeanette E Bröms, Takahiko Ishikawa, Sun N Wai, Anders Sjöstedt BMC Microbiology 2013, 13:96 (3 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

30.

588
Accesses

Research article   Open Access

Tyrosine-containing peptides are precursors of tyramine produced by Lactobacillus plantarum strain IR BL0076 isolated from wine

Maryse Bonnin-Jusserand, Cosette Grandvalet, Aurélie Rieu, Stéphanie Weidmann, Hervé Alexandre BMC Microbiology 2012, 12:199 (11 September 2012)

Abstract | Full text | PDF | PubMed

31.

573
Accesses

Research article   Open Access Highly Accessed

TypA is involved in virulence, antimicrobial resistance and biofilm formation in Pseudomonas aeruginosa

Anke Neidig, Amy TY Yeung, Thibaut Rosay, Beatrix Tettmann, Nikola Strempel, Martina Rueger, Olivier Lesouhaitier, Joerg Overhage BMC Microbiology 2013, 13:77 (9 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

32.

568
Accesses

Research article   Open Access Highly Accessed

Coverage evaluation of universal bacterial primers using the metagenomic datasets

Dan-Ping Mao, Quan Zhou, Chong-Yu Chen, Zhe-Xue Quan BMC Microbiology 2012, 12:66 (3 May 2012)

Abstract | Full text | PDF | PubMed

33.

562
Accesses

Research article   Open Access

Molecular analysis of non-O1/non-O139 Vibrio cholerae isolated from hospitalised patients in China

Yun Luo, Julian Ye, Dazhi Jin, Gangqiang Ding, Zheng Zhang, Lingling Mei, Sophie Octavia, Ruiting Lan BMC Microbiology 2013, 13:52 (4 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

34.

524
Accesses

Research article   Open Access

Genomes-based phylogeny of the genus Xanthomonas

Luis M Rodriguez-R, Alejandro Grajales, Mario L Arrieta-Ortiz, Camilo Salazar, Silvia Restrepo, Adriana Bernal BMC Microbiology 2012, 12:43 (23 March 2012)

Abstract | Full text | PDF | PubMed

35.

522
Accesses

Research article   Open Access Highly Accessed

Antiadhesive activity of the biosurfactant pseudofactin II secreted by the Arctic bacterium Pseudomonas fluorescens BD5

Tomasz Janek, Marcin Łukaszewicz, Anna Krasowska BMC Microbiology 2012, 12:24 (23 February 2012)

Abstract | Full text | PDF | PubMed

36.

512
Accesses

Research article   Open Access

Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity

Timothy J Johnson, Juan E Abrahante, Samuel S Hunter, Melissa Hauglund, Fred M Tatum, Samuel K Maheswaran, Robert E Briggs BMC Microbiology 2013, 13:106 (14 May 2013)

Abstract | Full text | PDF | PubMed

37.

501
Accesses

Research article   Open Access

Influence of internalin a murinisation on host resistance to orally acquired listeriosis in mice

Silke Bergmann, Philippa M Beard, Bastian Pasche, Stefan Lienenklaus, Siegfried Weiss, Cormac G M Gahan, Klaus Schughart, Andreas Lengeling BMC Microbiology 2013, 13:90 (23 April 2013)

Abstract | Full text | PDF | ePUB | PubMed |  Editor’s summary

Listeria monocytogenes modified to express a mutant internalin A, that interacts with murine E-cadherin, are able to efficiently cross the intestinal- but not the blood-brain barrier in mice suggesting different molecular mechanisms for these processes.

38.

502
Accesses

Research article   Open Access Highly Accessed

Putative SF2 helicases of the early-branching eukaryote Giardia lamblia are involved in antigenic variation and parasite differentiation into cysts

Pablo R Gargantini, Marianela C Serradell, Alessandro Torri, Hugo D Lujan BMC Microbiology 2012, 12:284 (28 November 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The Giardia lamblia genome contains many RNA helicases that appear to have a role during both antigenic variation and encystation of the parasite although none have significant homology with the RNA helicase domain of Dicer enzymes.

39.

488
Accesses

Correspondence   Open Access Highly Accessed

Cultivation conditions and the diffusion of oxygen into culture media: The rationale for the flask-to-medium ratio in microbiology

Greg A Somerville, Richard A Proctor BMC Microbiology 2013, 13:9 (16 January 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

As laboratory technology increases in sophistication Greg Somerville and Richard Proctor highlight the importance of considering all bacterial culture conditions, such as the flask-to-medium ratio, when designing experiments, to ensure accuracy in the reporting of results.

40.

469
Accesses

Research article   Open Access Highly Accessed

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

Eva Bellemain, Tor Carlsen, Christian Brochmann, Eric Coissac, Pierre Taberlet, Håvard Kauserud BMC Microbiology 2010, 10:189 (9 July 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000

41.

470
Accesses

Research article   Open Access Highly Accessed

Molecular analysis of volatile metabolites released specifically by staphylococcus aureus and pseudomonas aeruginosa

Wojciech Filipiak, Andreas Sponring, Maria Baur, Anna Filipiak, Clemens Ager, Helmut Wiesenhofer, Markus Nagl, Jakob Troppmair, Anton Amann BMC Microbiology 2012, 12:113 (20 June 2012)

Abstract | Full text | PDF | PubMed

42.

468
Accesses

Research article   Open Access Highly Accessed

Identification of Burkholderia mallei and Burkholderia pseudomallei adhesins for human respiratory epithelial cells

Rachel Balder, Serena Lipski, John J Lazarus, William Grose, Ronald M Wooten, Robert J Hogan, Donald E Woods, Eric R Lafontaine BMC Microbiology 2010, 10:250 (28 September 2010)

Abstract | Full text | PDF | PubMed

43.

468
Accesses

Research article   Open Access Highly Accessed

Development of Loop-Mediated Isothermal Amplification (LAMP) Assays for Rapid Detection of Ehrlichia ruminantium

Ryo Nakao, Ellen Y Stromdahl, Joseph W Magona, Bonto Faburay, Boniface Namangala, Imna Malele, Noboru Inoue, Dirk Geysen, Kiichi Kajino, Frans Jongejan, Chihiro Sugimoto BMC Microbiology 2010, 10:296 (19 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

44.

466
Accesses

Research article   Open Access

Comparative genotypic and pathogenic examination of Campylobacter concisus isolates from diarrheic and non-diarrheic humans

Lisa D Kalischuk, G Douglas Inglis BMC Microbiology 2011, 11:53 (15 March 2011)

Abstract | Full text | PDF | PubMed

45.

463
Accesses

Research article   Open Access

Acid stress response and protein induction in Campylobacter jejuni isolates with different acid tolerance

Tina Birk, Monica Wik, René Lametsch, Susanne Knøchel BMC Microbiology 2012, 12:174 (13 August 2012)

Abstract | Full text | PDF | PubMed

46.

461
Accesses

Research article   Open Access Highly Accessed

Human Streptococcus agalactiae strains in aquatic mammals and fish

Christian MJ Delannoy, Margaret Crumlish, Michael C Fontaine, Jolinda Pollock, Geoff Foster, Mark P Dagleish, James F Turnbull, Ruth N Zadoks BMC Microbiology 2013, 13:41 (18 February 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

47.

459
Accesses

Research article   Open Access Highly Accessed

Evaluation of five DNA extraction methods for purification of DNA from atherosclerotic tissue and estimation of prevalence of Chlamydia pneumoniae in tissue from a Danish population undergoing vascular repair

Tina Mygind, Lars Østergaard, Svend Birkelund, Jes S Lindholt, Gunna Christiansen BMC Microbiology 2003, 3:19 (2 September 2003)

Abstract | Full text | PDF | PubMed

48.

457
Accesses

Research article   Open Access Highly Accessed

Lactobacillus plantarum (VR1) isolated from an Ayurvedic medicine (Kutajarista) ameliorates in vitro cellular damage caused by Aeromonas veronii

Himanshu Kumar, Ashraf Y Rangrez, Kannayakanahalli M Dayananda, Ashwini N Atre, Milind S Patole, Yogesh S Shouche BMC Microbiology 2011, 11:152 (27 June 2011)

Abstract | Full text | PDF | PubMed

49.

452
Accesses

Research article   Open Access

Diversity of endophytic fungi and screening of fungal paclitaxel producer from Anglojap yew, Taxus x media

Zhi-Qiang Xiong, Ying-Ying Yang, Na Zhao, Yong Wang BMC Microbiology 2013, 13:71 (28 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

50.

453
Accesses

Research article   Open Access

The liposoluble proteome of Mycoplasma agalactiae: an insight into the minimal protein complement of a bacterial membrane

Carla Cacciotto, Maria Addis, Daniela Pagnozzi, Bernardo Chessa, Elisabetta Coradduzza, Laura Carcangiu, Sergio Uzzau, Alberto Alberti, Marco Pittau BMC Microbiology 2010, 10:225 (25 August 2010)

Abstract | Full text | PDF | PubMed

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