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Functional and structural genomics Section edited by Pearlly Yan

This section considers studies of change in the expression and regulation of genes and genomes conducted at a genomic scale in relation to health and disease states.

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1.

Research article   Open Access

Circadian transcriptome analysis in human fibroblasts from Hunter syndrome and impact of iduronate-2-sulfatase treatment

Gianluigi Mazzoccoli, Rosella Tomanin, Tommaso Mazza, Francesca D¿Avanzo, Marika Salvalaio, Laura Rigon, Alessandra Zanetti, Valerio Pazienza, Massimo Francavilla, Francesco Giuliani, Manlio Vinciguerra, Maurizio Scarpa BMC Medical Genomics 2013, 6:37 (2 October 2013)

Abstract | Provisional PDF

2.

Research article   Open Access

Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers

Adam L Cohen, Stephen R Piccolo, Luis Cheng, Rafaella Soldi, Bing Han, W Evan Johnson, Andrea H Bild BMC Medical Genomics 2013, 6:35 (30 September 2013)

Abstract | Provisional PDF

3.

Research article   Open Access Highly Accessed

Microarray characterization of gene expression changes in blood during acute ethanol exposure

Doris M Kupfer, Vicky L White, David L Strayer, Dennis J Crouch, Dennis Burian BMC Medical Genomics 2013, 6:26 (25 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

4.

Research article   Open Access

Validation of microarray data in human lymphoblasts shows a role of the ubiquitin-proteasome system and NF-kB in the pathogenesis of Down syndrome

Barbara Granese, Iris Scala, Carmen Spatuzza, Anna Valentino, Marcella Coletta, Rosa Vacca, Pasquale De Luca, Generoso Andria BMC Medical Genomics 2013, 6:24 (5 July 2013)

Abstract | Full text | PDF | PubMed

5.

Research article   Open Access

Alteration of human blood cell transcriptome in uremia

Andreas Scherer, Oliver P Günther, Robert F Balshaw, Zsuzsanna Hollander, Janet Wilson-McManus, Raymond Ng, W McMaster, Bruce M McManus, Paul A Keown BMC Medical Genomics 2013, 6:23 (28 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

6.

Research article   Open Access

Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways

Cecilia Mancini, Paola Roncaglia, Alessandro Brussino, Giovanni Stevanin, Nicola Lo Buono, Helena Krmac, Francesca Maltecca, Elena Gazzano, Anna Bartoletti Stella, Maria Calvaruso, Luisa Iommarini, Claudia Cagnoli, Sylvie Forlani, Isabelle Le Ber, Alexandra Durr, Alexis Brice, Dario Ghigo, Giorgio Casari, Anna Porcelli, Ada Funaro, Giuseppe Gasparre, Stefano Gustincich, Alfredo Brusco BMC Medical Genomics 2013, 6:22 (18 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

7.

Research article   Open Access

Interplay between estrogen receptor and AKT in Estradiol-induced alternative splicing

Poornima Bhat-Nakshatri, Eun-Kyung Song, Nikail R Collins, Vladimir N Uversky, A Dunker, Bert W O’Malley, Tim R Geistlinger, Jason S Carroll, Myles Brown, Harikrishna Nakshatri BMC Medical Genomics 2013, 6:21 (11 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Research article   Open Access

Cidofovir selectivity is based on the different response of normal and cancer cells to DNA damage

Tim De Schutter, Graciela Andrei, Dimitri Topalis, Lieve Naesens, Robert Snoeck BMC Medical Genomics 2013, 6:18 (23 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

Research article   Open Access

A specific immune transcriptomic profile discriminates chronic kidney disease patients in predialysis from hemodialyzed patients

Gianluigi Zaza, Simona Granata, Federica Rascio, Paola Pontrelli, Maria Pia Dell’Oglio, Sharon Natasha Cox, Giovanni Pertosa, Giuseppe Grandaliano, Antonio Lupo BMC Medical Genomics 2013, 6:17 (10 May 2013)

Abstract | Full text | PDF | ePUB | PubMed |  Editor’s summary

Transcriptome profiles of patients undergoing haemodialysis show a different immune pattern compared to patients with chronic kidney disease without dialysis, although it cannot yet be ruled out that other confounding factors are responsible.

10.

Research article   Open Access Highly Accessed

Genome-wide search for the genes accountable for the induced resistance to HIV-1 infection in activated CD4+ T cells: apparent transcriptional signatures, co-expression networks and possible cellular processes

Wen-Wen Xu, Miao-Jun Han, Dai Chen, Ling Chen, Yan Guo, Andrew Willden, Di-Qiu Liu, Hua-Tang Zhang BMC Medical Genomics 2013, 6:15 (1 May 2013)

Abstract | Full text | PDF | ePUB | PubMed |  Editor’s summary

Important regulatory genes associated with cell cycle functions and the actin cytoskeleton are potentially implicated with HIV-1 resistance in CD4+ T cells, elucidated using a co-expression network analysis.

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