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Bioinformatic and algorithmical studies Section edited by Jonas Almeida

This section considers studies on the development and application of novel computational and statistical methods to the analysis of genomic data for the study of health and disease.

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1.

Research article   Open Access

Pathway-based outlier method reveals heterogeneous genomic structure of autism in blood transcriptome

Malcolm G Campbell, Isaac S Kohane, Sek Kong BMC Medical Genomics 2013, 6:34 (24 September 2013)

Abstract | Full text | PDF | PubMed

2.

Software   Open Access

Genotyping of human neutrophil antigens (HNA) from whole genome sequencing data

Hsueh-Ting Chu, Han Lin, Theresa Tsun-Hui Tsao, Chun-Fan Chang, William WL Hsiao, Tze-Jung Yeh, Ching-Mao Chang, Yen-Wenn Liu, Tse-Yi Wang, Ko-Chun Yang, Tsung-Jui Chen, Jen-Chih Chen, Kuang-Chi Chen, Cheng-Yan Kao BMC Medical Genomics 2013, 6:31 (12 September 2013)

Abstract | Provisional PDF | PubMed

3.

Research article   Open Access

Identification of potential synthetic lethal genes to p53 using a computational biology approach

Xiaosheng Wang, Richard Simon BMC Medical Genomics 2013, 6:30 (11 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

4.

Research article   Open Access

Whole transcriptome sequencing identifies tumor-specific mutations in human oral squamous cell carcinoma

Qu Zhang, Jun Zhang, Hong Jin, Sitong Sheng BMC Medical Genomics 2013, 6:28 (4 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

5.

Research article   Open Access

Identification and characterization of alternative exon usage linked glioblastoma multiforme survival

Ahmed Sadeque, Nicola VL SerĂ£o, Bruce R Southey, Kristin R Delfino, Sandra L Rodriguez-Zas BMC Medical Genomics 2012, 5:59 (4 December 2012)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access

Visualization and identification of health space, based on personalized molecular phenotype and treatment response to relevant underlying biological processes

Jildau Bouwman, Jack TWE Vogels, Suzan Wopereis, Carina M Rubingh, Sabina Bijlsma, Ben van Ommen BMC Medical Genomics 2012, 5:1 (6 January 2012)

Abstract | Full text | PDF | PubMed

7.

Research article   Open Access Highly Accessed

Batch effect correction for genome-wide methylation data with Illumina Infinium platform

Zhifu Sun, High Chai, Yanhong Wu, Wendy M White, Krishna V Donkena, Christopher J Klein, Vesna D Garovic, Terry M Therneau, Jean-Pierre A Kocher BMC Medical Genomics 2011, 4:84 (16 December 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

8.

Research article   Open Access

Estimates of array and pool-construction variance for planning efficient DNA-pooling genome wide association studies

Madalene A Earp, Maziar Rahmani, Kevin Chew, Angela Brooks-Wilson BMC Medical Genomics 2011, 4:81 (28 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

9.

Research article   Open Access

Quantifying stability in gene list ranking across microarray derived clinical biomarkers

Sebastian Schneckener, Nilou S Arden, Andreas Schuppert BMC Medical Genomics 2011, 4:73 (14 October 2011)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access

Bayesian probit regression model for the diagnosis of pulmonary fibrosis: proof-of-principle

Eric B Meltzer, William T Barry, Thomas A D'Amico, Robert D Davis, Shu S Lin, Mark W Onaitis, Lake D Morrison, Thomas A Sporn, Mark P Steele, Paul W Noble BMC Medical Genomics 2011, 4:70 (5 October 2011)

Abstract | Full text | PDF | PubMed

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