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		Research article Saliva samples are a viable alternative to blood samples as a source of DNA for high throughput genotyping Jean E Abraham, Mel J Maranian, Inmaculada Spiteri, Roslin Russell, Susan Ingle, Craig Luccarini, Helena M Earl, Paul DP Pharoah, Alison M Dunning, Carlos Caldas BMC Medical Genomics 2012, 5:19 (30 May 2012) Abstract \| Provisional PDF
		Research article MicroRNA profiling of a CD133+ spheroid-forming subpopulation of the OVCAR3 human ovarian cancer cell line Eun Ji Nam, Maria Lee, Ga Won Yim, Jae Hoon Kim, Sunghoon Kim, Sang Wun Kim, Young Tae Kim BMC Medical Genomics 2012, 5:18 (29 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform Sarah De Keulenaer, Jan Hellemans, Steve Lefever, Jean-Pierre Renard, Joachim De Schrijver, Hendrik Van de Voorde, Mohammad Amin Tabatabaiefar, Filip Van Nieuwerburgh, Daisy Flamez, Filip Pattyn, Bieke Scharlaken, Dieter Deforce, Sofie Bekaert, Wim Van Criekinge, Jo Vandesompele, Guy Van Camp, Paul Coucke BMC Medical Genomics 2012, 5:17 (18 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article A target based approach identifies genomic predictors of breast cancer patient response to chemotherapy Robin M Hallett, Gregory Pond, John A Hassell BMC Medical Genomics 2012, 5:16 (11 May 2012) Abstract \| Provisional PDF \| PubMed \| Editor’s summary Two new gene expression signatures can predict how breast cancer tumors will respond to two of the common kinds of chemotherapy, highlighting the potential of target-based gene expression indices to predict patient response to drug therapy.
		Research article Fibroblasts from phenotypically normal palmar fascia exhibit molecular profiles highly similar to fibroblasts from active disease in Dupuytren's Contracture Latha Satish, William A LaFramboise, Sandra Johnson, Linda Vi, Anna Njarlangattil, Christina Raykha, Michael J Krill-Burger, Phillip H Gallo, David B O'Gorman, Bing SIANG Gan, Mark E Baratz, Garth D Ehrlich, Sandeep H Kathju BMC Medical Genomics 2012, 5:15 (4 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Identification of genes with a correlation between copy number and expression in gastric cancer Lei Cheng, Ping Wang, Sheng Yang, Yanqing Yang, Qing Zhang, Wen Zhang, Huasheng Xiao, Hengjun Gao, Qinghua Zhang BMC Medical Genomics 2012, 5:14 (4 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Novel biomarker combination improves the diagnosis of serious bacterial infections in Malawian children Adam D Irwin, Fiona Marriage, Limangeni A Mankhambo, IPD Study Group, Graham Jeffers, Ruwanthi Kolamunnage-Dona, Malcolm Guiver, Brigitte Denis, Elizabeth M Molyneux, Malcolm E Molyneux, Philip J Day, Enitan D Carrol BMC Medical Genomics 2012, 5:13 (4 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Evaluation of the imputation performance of the program IMPUTE in an admixed sample from Mexico City using several model designs S Krithika, Adán Valladares-Salgado, Jesus Peralta, Jorge Escobedo-de La Peña, Jesus Kumate-Rodríguez, Miguel Cruz, Esteban J Parra BMC Medical Genomics 2012, 5:12 (1 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Interaction among apoptosis-associated sequence variants and joint effects on aggressive prostate cancer Nicole A Lavender, Erica N Rogers, Susan Yeyeodu, James Rudd, Ting Hu, Jie Zhang, Guy N Brock, Kevin S Kimbro, Jason H Moore, David W Hein, La Creis R Kidd BMC Medical Genomics 2012, 5:11 (30 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article DNA methylation differences at growth related genes correlate with birth weight: a molecular signature linked to developmental origins of adult disease? Nahid Turan, Mohamed F Ghalwash, Sunita Katari, Christos Coutifaris, Zoran Obradovic, Carmen Sapienza BMC Medical Genomics 2012, 5:10 (12 April 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Profiling of inter-individual DNA methylation differences in neonates has identified 23 genes that account for 70-87% of variance in birth weight, whilst traditional gene expression profiling identified a far smaller proportion.
		Research article Adipose tissue gene expression analysis reveals changes in inflammatory, mitochondrial respiratory and lipid metabolic pathways in obese insulin-resistant subjects Jarkko Soronen, Pirkka-Pekka P Laurila, Jussi Naukkarinen, Ida Surakka, Samuli Ripatti, Matti Jauhiainen, Vesa M Olkkonen, Hannele Yki-Jarvinen BMC Medical Genomics 2012, 5:9 (3 April 2012) Abstract \| Provisional PDF \| PubMed
		Research article High-throughput detection of aberrant imprint methylation in the ovarian cancer by the bisulphite PCR-Luminex method Hitoshi Hiura, Hiroaki Okae, Hisato Kobayash, Naoko Miyauchi, Fumi Sato, Akiko Sato, Fumihiko Suzuki, Satoru Nagase, Junichi Sugawara, Kunihiko Nakai, Nobuo Yaegashi, Takahiro Arima BMC Medical Genomics 2012, 5:8 (26 March 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Aberrant patterns of methylation are found in samples from patients with ovarian cancer using the new bisulphate PCR-Luminex (BPL) method, highlighting H19 and PEG1 as potential biomarkers for the disease.
		Research article Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes Luca A Lotta, Mark Wang, Jin Yu, Ida Martinelli, Fuli Yu, Serena M Passamonti, Dario Consonni, Emanuela Pappalardo, Marzia Menegatti, Steven E Scherer, Lora L Lewis, Humeira Akbar, Yuanqing Wu, Matthew N Bainbridge, Donna M Muzny, Pier M Mannucci, Richard A Gibbs, Flora Peyvandi BMC Medical Genomics 2012, 5:7 (21 February 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples Diane Raingeard de la Blétière, Odile Blanchet, Pascale Cornillet-Lefèbvre, Anne Coutolleau, Laurence Baranger, Franck Geneviève, Isabelle Luquet, Mathilde Hunault-Berger, Annaelle Beucher, Aline Schmidt-Tanguy, Marc Zandecki, Yves Delneste, Norbert Ifrah, Philippe Guardiola BMC Medical Genomics 2012, 5:6 (30 January 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Global analysis of DNA methylation in early-stage liver fibrosis Yoko Komatsu, Tsuyoshi Waku, Naoya Iwasaki, Wakana Ono, Chie Yamaguchi, Junn Yanagisawa BMC Medical Genomics 2012, 5:5 (27 January 2012) Abstract \| Full text \| PDF \| PubMed
		Debate The role of disease characteristics in the ethical debate on personal genome testing Eline M Bunnik, Maartje HN Schermer, A Cecile JW Janssens BMC Medical Genomics 2012, 5:4 (19 January 2012) Abstract \| Full text \| PDF \| PubMed
		Research article An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma Zhaohui Luo, Liyang Zhang, Zheng Li, Xiayu Li, Gang Li, Haibo Yu, Chen Jiang, Yafei Dai, Xiaofang Guo, Juanjuan Xiang, Guiyuan Li BMC Medical Genomics 2012, 5:3 (19 January 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Molecular prediction for atherogenic risks across different cell types of leukocytes Feng Cheng, Ellen C Keeley, Jae K Lee BMC Medical Genomics 2012, 5:2 (13 January 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary An new set of 56 gene expression biomarkers could be used to predict early atherosclerosis from leukocytes before the symptoms of heart disease have developed, and this test can be further refined to identify very high risk patients.
		Research article Visualization and identification of health space, based on personalized molecular phenotype and treatment response to relevant underlying biological processes Jildau Bouwman, Jack TWE Vogels, Suzan Wopereis, Carina M Rubingh, Sabina Bijlsma, Ben van Ommen BMC Medical Genomics 2012, 5:1 (6 January 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Early peroxisome proliferator-activated receptor gamma regulated genes involved in expansion of pancreatic beta cell mass Yurena Vivas, Cristina Martínez-García, Adriana Izquierdo, Francisco Garcia-Garcia, Sergio Callejas, Ismael Velasco, Mark Campbell, Manuel Ros, Ana Dopazo, Joaquin Dopazo, Antonio Vidal-Puig, Gema Medina-Gomez BMC Medical Genomics 2011, 4:86 (30 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Allele-specific disparity in breast cancer Fatemeh Kaveh, Hege Edvardsen, Anne-Lise Børresen-Dale, Vessela N Kristensen, Hiroko K Solvang BMC Medical Genomics 2011, 4:85 (21 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Batch effect correction for genome-wide methylation data with Illumina Infinium platform Zhifu Sun, High Chai, Yanhong Wu, Wendy M White, Krishna V Donkena, Christopher J Klein, Vesna D Garovic, Terry M Therneau, Jean-Pierre A Kocher BMC Medical Genomics 2011, 4:84 (16 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Transforming growth factor β receptor 1 is a new candidate prognostic biomarker after acute myocardial infarction Yvan Devaux, Melanie Bousquenaud, Sophie Rodius, Pierre-Yves Marie, Fatiha Maskali, Lu Zhang, Francisco Azuaje, Daniel R Wagner BMC Medical Genomics 2011, 4:83 (5 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Identification of DNA methylation changes associated with human gastric cancer Jung-Hoon Park, Jinah Park, Jung Kyoon Choi, Jaemyun Lyu, Min-Gyun Bae, Young-Gun Lee, Jae-Bum Bae, Dong Yoon Park, Han-Kwang Yang, Tae-You Kim, Young-Joon Kim BMC Medical Genomics 2011, 4:82 (2 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Estimates of array and pool-construction variance for planning efficient DNA-pooling genome wide association studies Madalene A Earp, Maziar Rahmani, Kevin Chew, Angela Brooks-Wilson BMC Medical Genomics 2011, 4:81 (28 November 2011) Abstract \| Full text \| PDF \| PubMed

	All
		Research article Saliva samples are a viable alternative to blood samples as a source of DNA for high throughput genotyping Jean E Abraham, Mel J Maranian, Inmaculada Spiteri, Roslin Russell, Susan Ingle, Craig Luccarini, Helena M Earl, Paul DP Pharoah, Alison M Dunning, Carlos Caldas BMC Medical Genomics 2012, 5:19 (30 May 2012) Abstract \| Provisional PDF
		Research article MicroRNA profiling of a CD133+ spheroid-forming subpopulation of the OVCAR3 human ovarian cancer cell line Eun Ji Nam, Maria Lee, Ga Won Yim, Jae Hoon Kim, Sunghoon Kim, Sang Wun Kim, Young Tae Kim BMC Medical Genomics 2012, 5:18 (29 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform Sarah De Keulenaer, Jan Hellemans, Steve Lefever, Jean-Pierre Renard, Joachim De Schrijver, Hendrik Van de Voorde, Mohammad Amin Tabatabaiefar, Filip Van Nieuwerburgh, Daisy Flamez, Filip Pattyn, Bieke Scharlaken, Dieter Deforce, Sofie Bekaert, Wim Van Criekinge, Jo Vandesompele, Guy Van Camp, Paul Coucke BMC Medical Genomics 2012, 5:17 (18 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article A target based approach identifies genomic predictors of breast cancer patient response to chemotherapy Robin M Hallett, Gregory Pond, John A Hassell BMC Medical Genomics 2012, 5:16 (11 May 2012) Abstract \| Provisional PDF \| PubMed \| Editor’s summary Two new gene expression signatures can predict how breast cancer tumors will respond to two of the common kinds of chemotherapy, highlighting the potential of target-based gene expression indices to predict patient response to drug therapy.
		Research article Fibroblasts from phenotypically normal palmar fascia exhibit molecular profiles highly similar to fibroblasts from active disease in Dupuytren's Contracture Latha Satish, William A LaFramboise, Sandra Johnson, Linda Vi, Anna Njarlangattil, Christina Raykha, Michael J Krill-Burger, Phillip H Gallo, David B O'Gorman, Bing SIANG Gan, Mark E Baratz, Garth D Ehrlich, Sandeep H Kathju BMC Medical Genomics 2012, 5:15 (4 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Identification of genes with a correlation between copy number and expression in gastric cancer Lei Cheng, Ping Wang, Sheng Yang, Yanqing Yang, Qing Zhang, Wen Zhang, Huasheng Xiao, Hengjun Gao, Qinghua Zhang BMC Medical Genomics 2012, 5:14 (4 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Novel biomarker combination improves the diagnosis of serious bacterial infections in Malawian children Adam D Irwin, Fiona Marriage, Limangeni A Mankhambo, IPD Study Group, Graham Jeffers, Ruwanthi Kolamunnage-Dona, Malcolm Guiver, Brigitte Denis, Elizabeth M Molyneux, Malcolm E Molyneux, Philip J Day, Enitan D Carrol BMC Medical Genomics 2012, 5:13 (4 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Evaluation of the imputation performance of the program IMPUTE in an admixed sample from Mexico City using several model designs S Krithika, Adán Valladares-Salgado, Jesus Peralta, Jorge Escobedo-de La Peña, Jesus Kumate-Rodríguez, Miguel Cruz, Esteban J Parra BMC Medical Genomics 2012, 5:12 (1 May 2012) Abstract \| Provisional PDF \| PubMed
		Research article Interaction among apoptosis-associated sequence variants and joint effects on aggressive prostate cancer Nicole A Lavender, Erica N Rogers, Susan Yeyeodu, James Rudd, Ting Hu, Jie Zhang, Guy N Brock, Kevin S Kimbro, Jason H Moore, David W Hein, La Creis R Kidd BMC Medical Genomics 2012, 5:11 (30 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article DNA methylation differences at growth related genes correlate with birth weight: a molecular signature linked to developmental origins of adult disease? Nahid Turan, Mohamed F Ghalwash, Sunita Katari, Christos Coutifaris, Zoran Obradovic, Carmen Sapienza BMC Medical Genomics 2012, 5:10 (12 April 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Profiling of inter-individual DNA methylation differences in neonates has identified 23 genes that account for 70-87% of variance in birth weight, whilst traditional gene expression profiling identified a far smaller proportion.
		Research article Adipose tissue gene expression analysis reveals changes in inflammatory, mitochondrial respiratory and lipid metabolic pathways in obese insulin-resistant subjects Jarkko Soronen, Pirkka-Pekka P Laurila, Jussi Naukkarinen, Ida Surakka, Samuli Ripatti, Matti Jauhiainen, Vesa M Olkkonen, Hannele Yki-Jarvinen BMC Medical Genomics 2012, 5:9 (3 April 2012) Abstract \| Provisional PDF \| PubMed
		Research article High-throughput detection of aberrant imprint methylation in the ovarian cancer by the bisulphite PCR-Luminex method Hitoshi Hiura, Hiroaki Okae, Hisato Kobayash, Naoko Miyauchi, Fumi Sato, Akiko Sato, Fumihiko Suzuki, Satoru Nagase, Junichi Sugawara, Kunihiko Nakai, Nobuo Yaegashi, Takahiro Arima BMC Medical Genomics 2012, 5:8 (26 March 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Aberrant patterns of methylation are found in samples from patients with ovarian cancer using the new bisulphate PCR-Luminex (BPL) method, highlighting H19 and PEG1 as potential biomarkers for the disease.
		Research article Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes Luca A Lotta, Mark Wang, Jin Yu, Ida Martinelli, Fuli Yu, Serena M Passamonti, Dario Consonni, Emanuela Pappalardo, Marzia Menegatti, Steven E Scherer, Lora L Lewis, Humeira Akbar, Yuanqing Wu, Matthew N Bainbridge, Donna M Muzny, Pier M Mannucci, Richard A Gibbs, Flora Peyvandi BMC Medical Genomics 2012, 5:7 (21 February 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples Diane Raingeard de la Blétière, Odile Blanchet, Pascale Cornillet-Lefèbvre, Anne Coutolleau, Laurence Baranger, Franck Geneviève, Isabelle Luquet, Mathilde Hunault-Berger, Annaelle Beucher, Aline Schmidt-Tanguy, Marc Zandecki, Yves Delneste, Norbert Ifrah, Philippe Guardiola BMC Medical Genomics 2012, 5:6 (30 January 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Global analysis of DNA methylation in early-stage liver fibrosis Yoko Komatsu, Tsuyoshi Waku, Naoya Iwasaki, Wakana Ono, Chie Yamaguchi, Junn Yanagisawa BMC Medical Genomics 2012, 5:5 (27 January 2012) Abstract \| Full text \| PDF \| PubMed
		Debate The role of disease characteristics in the ethical debate on personal genome testing Eline M Bunnik, Maartje HN Schermer, A Cecile JW Janssens BMC Medical Genomics 2012, 5:4 (19 January 2012) Abstract \| Full text \| PDF \| PubMed
		Research article An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma Zhaohui Luo, Liyang Zhang, Zheng Li, Xiayu Li, Gang Li, Haibo Yu, Chen Jiang, Yafei Dai, Xiaofang Guo, Juanjuan Xiang, Guiyuan Li BMC Medical Genomics 2012, 5:3 (19 January 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Molecular prediction for atherogenic risks across different cell types of leukocytes Feng Cheng, Ellen C Keeley, Jae K Lee BMC Medical Genomics 2012, 5:2 (13 January 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary An new set of 56 gene expression biomarkers could be used to predict early atherosclerosis from leukocytes before the symptoms of heart disease have developed, and this test can be further refined to identify very high risk patients.
		Research article Visualization and identification of health space, based on personalized molecular phenotype and treatment response to relevant underlying biological processes Jildau Bouwman, Jack TWE Vogels, Suzan Wopereis, Carina M Rubingh, Sabina Bijlsma, Ben van Ommen BMC Medical Genomics 2012, 5:1 (6 January 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Early peroxisome proliferator-activated receptor gamma regulated genes involved in expansion of pancreatic beta cell mass Yurena Vivas, Cristina Martínez-García, Adriana Izquierdo, Francisco Garcia-Garcia, Sergio Callejas, Ismael Velasco, Mark Campbell, Manuel Ros, Ana Dopazo, Joaquin Dopazo, Antonio Vidal-Puig, Gema Medina-Gomez BMC Medical Genomics 2011, 4:86 (30 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Allele-specific disparity in breast cancer Fatemeh Kaveh, Hege Edvardsen, Anne-Lise Børresen-Dale, Vessela N Kristensen, Hiroko K Solvang BMC Medical Genomics 2011, 4:85 (21 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Batch effect correction for genome-wide methylation data with Illumina Infinium platform Zhifu Sun, High Chai, Yanhong Wu, Wendy M White, Krishna V Donkena, Christopher J Klein, Vesna D Garovic, Terry M Therneau, Jean-Pierre A Kocher BMC Medical Genomics 2011, 4:84 (16 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Transforming growth factor β receptor 1 is a new candidate prognostic biomarker after acute myocardial infarction Yvan Devaux, Melanie Bousquenaud, Sophie Rodius, Pierre-Yves Marie, Fatiha Maskali, Lu Zhang, Francisco Azuaje, Daniel R Wagner BMC Medical Genomics 2011, 4:83 (5 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Identification of DNA methylation changes associated with human gastric cancer Jung-Hoon Park, Jinah Park, Jung Kyoon Choi, Jaemyun Lyu, Min-Gyun Bae, Young-Gun Lee, Jae-Bum Bae, Dong Yoon Park, Han-Kwang Yang, Tae-You Kim, Young-Joon Kim BMC Medical Genomics 2011, 4:82 (2 December 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Estimates of array and pool-construction variance for planning efficient DNA-pooling genome wide association studies Madalene A Earp, Maziar Rahmani, Kevin Chew, Angela Brooks-Wilson BMC Medical Genomics 2011, 4:81 (28 November 2011) Abstract \| Full text \| PDF \| PubMed