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Proteomics

This section covers all aspects of high-throughput proteomics, experimental and analytical approaches to proteome analysis, mass spectrometry, and also metabolomics.

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31.

Research article   Open Access

An iterative workflow for mining the human intestinal metaproteome

Koos Rooijers, Carolin Kolmeder, Catherine Juste, Joël Doré, Mark de Been, Sjef Boeren, Pilar Galan, Christian Beauvallet, Willem M de Vos, Peter J Schaap BMC Genomics 2011, 12:6 (5 January 2011)

Abstract | Full text | PDF | PubMed

32.

Research article   Open Access

Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction

Samira Jaeger, Christine T Sers, Ulf Leser BMC Genomics 2010, 11:717 (20 December 2010)

Abstract | Full text | PDF | PubMed

33.

Research article   Open Access

A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding

Nicolas Lenfant, Jolanta Polanowska, Sophie Bamps, Shizue Omi, Jean-Paul Borg, Jérôme Reboul BMC Genomics 2010, 11:671 (26 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

34.

Methodology article   Open Access Highly Accessed

From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach

Astrid R Mach-Aigner, Karin Grosstessner-Hain, Marcio J Poças-Fonseca, Karl Mechtler, Robert L Mach BMC Genomics 2010, 11:644 (18 November 2010)

Abstract | Full text | PDF | PubMed

35.

Research article   Open Access

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

Machtelt Braaksma, Elena S Martens-Uzunova, Peter J Punt, Peter J Schaap BMC Genomics 2010, 11:584 (19 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

36.

Research article   Open Access Highly Accessed

Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

Nicholas J McGlincy, Lit-Yeen Tan, Nicodeme Paul, Mihaela Zavolan, Kathryn S Lilley, Christopher WJ Smith BMC Genomics 2010, 11:565 (14 October 2010)

Abstract | Full text | PDF | PubMed

37.

Database   Open Access

SHV Lactamase Engineering Database: a reconciliation tool for SHV β-lactamases in public databases

Quan K Thai, Juergen Pleiss BMC Genomics 2010, 11:563 (13 October 2010)

Abstract | Full text | PDF | PubMed

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