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Proteomics

This section covers all aspects of high-throughput proteomics, experimental and analytical approaches to proteome analysis, mass spectrometry, and also metabolomics.

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1.

Methodology article   Open Access

Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains

Vladimir Espinosa Angarica, Salvador Ventura, Javier Sancho BMC Genomics 2013, 14:316 (10 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

2.

Research article   Open Access

Global proteomic analysis of the oocyst/sporozoite of Toxoplasma gondii reveals commitment to a host-independent lifestyle

Alessia Possenti, Federica Fratini, Luca Fantozzi, Edoardo Pozio, Jitender P Dubey, Marta Ponzi, Elisabetta Pizzi, Furio Spano BMC Genomics 2013, 14:183 (15 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

3.

Methodology article   Open Access

Efficient recovery of proteins from multiple source samples after trizol ® or trizol ® LS RNA extraction and long-term storage

André ES Simões, Diane M Pereira, Joana D Amaral, Ana F Nunes, Sofia E Gomes, Pedro M Rodrigues, Adrian C Lo, Rudi D'Hooge, Clifford J Steer, Stephen N Thibodeau, Pedro M Borralho, Cecília MP Rodrigues BMC Genomics 2013, 14:181 (15 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

4.

Research article   Open Access

A kinetic model of the evolution of a protein interaction network

Piotr H Pawlowski, Szymon Kaczanowski, Piotr Zielenkiewicz BMC Genomics 2013, 14:172 (14 March 2013)

Abstract | Provisional PDF | PubMed

5.

Research article   Open Access Highly Accessed

Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions

Jainab Khatun, Yanbao Yu, John A Wrobel, Brian A Risk, Harsha P Gunawardena, Ashley Secrest, Wendy J Spitzer, Ling Xie, Li Wang, Xian Chen, Morgan C Giddings BMC Genomics 2013, 14:141 (28 February 2013)

Abstract | Full text | PDF | ePUB | PubMed

6.

Research article   Open Access

Novel aspects of grapevine response to phytoplasma infection investigated by a proteomic and phospho-proteomic approach with data integration into functional networks

Paolo Margaria, Simona Abbà, Sabrina Palmano BMC Genomics 2013, 14:38 (17 January 2013)

Abstract | Full text | PDF | PubMed

7.

Research article   Open Access

Proteomic characterization of the Rph15 barley resistance gene-mediated defence responses to leaf rust

Letizia Bernardo, Bhakti Prinsi, Alfredo Simone Negri, Luigi Cattivelli, Luca Espen, Giampiero Valè BMC Genomics 2012, 13:642 (20 November 2012)

Abstract | Full text | PDF | PubMed

8.

Research article   Open Access

Dynamics of domain coverage of the protein sequence universe

Bhanu Rekapalli, Kristin Wuichet, Gregory D Peterson, Igor B Zhulin BMC Genomics 2012, 13:634 (16 November 2012)

Abstract | Full text | PDF | PubMed

9.

Methodology article   Open Access Highly Accessed

Identification of proteins binding coding and non-coding human RNAs using protein microarrays

Zurab Siprashvili, Dan E Webster, Markus Kretz, Danielle Johnston, John L Rinn, Howard Y Chang, Paul A Khavari BMC Genomics 2012, 13:633 (16 November 2012)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access

Anopheles salivary gland proteomes from major malaria vectors

Albin Fontaine, Thierry Fusaï, Sébastien Briolant, Sylvain Buffet, Claude Villard, Emilie Baudelet, Mathieu Pophillat, Samuel Granjeaud, Christophe Rogier, Lionel Almeras BMC Genomics 2012, 13:614 (13 November 2012)

Abstract | Full text | PDF | PubMed

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