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Proteomics Section edited by Scott Hemby

This section covers all aspects of high-throughput proteomics, experimental and analytical approaches to proteome analysis, mass spectrometry, and also metabolomics.

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1.

Research article   Open Access

GRASP [Genomic Resource Access for Stoichioproteomics]: comparative explorations of the atomic content of 12 Drosophila proteomes

James D J Gilbert, Claudia Acquisti, Holly M Martinson, James J Elser, Sudhir Kumar, William F Fagan BMC Genomics 2013, 14:599 (4 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

2.

Methodology article   Open Access

Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains

Vladimir Espinosa Angarica, Salvador Ventura, Javier Sancho BMC Genomics 2013, 14:316 (10 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

3.

Research article   Open Access

Global proteomic analysis of the oocyst/sporozoite of Toxoplasma gondii reveals commitment to a host-independent lifestyle

Alessia Possenti, Federica Fratini, Luca Fantozzi, Edoardo Pozio, Jitender P Dubey, Marta Ponzi, Elisabetta Pizzi, Furio Spano BMC Genomics 2013, 14:183 (15 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

4.

Methodology article   Open Access

Efficient recovery of proteins from multiple source samples after trizol ® or trizol ® LS RNA extraction and long-term storage

André ES Simões, Diane M Pereira, Joana D Amaral, Ana F Nunes, Sofia E Gomes, Pedro M Rodrigues, Adrian C Lo, Rudi D'Hooge, Clifford J Steer, Stephen N Thibodeau, Pedro M Borralho, Cecília MP Rodrigues BMC Genomics 2013, 14:181 (15 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

5.

Research article   Open Access

A kinetic model of the evolution of a protein interaction network

Piotr H Pawlowski, Szymon Kaczanowski, Piotr Zielenkiewicz BMC Genomics 2013, 14:172 (14 March 2013)

Abstract | Full text | PDF | ePUB | PubMed | 1 comment

6.

Research article   Open Access Highly Accessed

Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions

Jainab Khatun, Yanbao Yu, John A Wrobel, Brian A Risk, Harsha P Gunawardena, Ashley Secrest, Wendy J Spitzer, Ling Xie, Li Wang, Xian Chen, Morgan C Giddings BMC Genomics 2013, 14:141 (28 February 2013)

Abstract | Full text | PDF | ePUB | PubMed

7.

Research article   Open Access

Novel aspects of grapevine response to phytoplasma infection investigated by a proteomic and phospho-proteomic approach with data integration into functional networks

Paolo Margaria, Simona Abbà, Sabrina Palmano BMC Genomics 2013, 14:38 (17 January 2013)

Abstract | Full text | PDF | PubMed

8.

Research article   Open Access

Proteomic characterization of the Rph15 barley resistance gene-mediated defence responses to leaf rust

Letizia Bernardo, Bhakti Prinsi, Alfredo Simone Negri, Luigi Cattivelli, Luca Espen, Giampiero Valè BMC Genomics 2012, 13:642 (20 November 2012)

Abstract | Full text | PDF | PubMed

9.

Research article   Open Access

Dynamics of domain coverage of the protein sequence universe

Bhanu Rekapalli, Kristin Wuichet, Gregory D Peterson, Igor B Zhulin BMC Genomics 2012, 13:634 (16 November 2012)

Abstract | Full text | PDF | PubMed

10.

Methodology article   Open Access Highly Accessed

Identification of proteins binding coding and non-coding human RNAs using protein microarrays

Zurab Siprashvili, Dan E Webster, Markus Kretz, Danielle Johnston, John L Rinn, Howard Y Chang, Paul A Khavari BMC Genomics 2012, 13:633 (16 November 2012)

Abstract | Full text | PDF | PubMed

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