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Prokaryote microbial genomics

This section covers the structure and function of the genomes of prokaryotic and archaea microorganisms.

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1.

Research article   Open Access

Genomic and physiological variability within Group II (non-proteolytic) Clostridium botulinum

Sandra C Stringer, Andrew T Carter, Martin D Webb, Ewelina Wachnicka, Lisa C Crossman, Mohammed Sebaihia, Michael W Peck BMC Genomics 2013, 14:333 (16 May 2013)

Abstract | Provisional PDF | PubMed

2.

Research article   Open Access

Sequencing platform and library preparation choices impact viral metagenomes

Sergei A Solonenko, J Ignacio-Espinoza, Adriana Alberti, Corinne Cruaud, Steven Hallam, Kostas Konstantinidis, Gene Tyson, Patrick Wincker, Matthew B Sullivan BMC Genomics 2013, 14:320 (10 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

3.

Research article   Open Access

Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04

Joakim Mark Andersen, Rodolphe Barrangou, Maher Abou Hachem, Sampo J Lahtinen, Yong-Jun Goh, Birte Svensson, Todd R Klaenhammer BMC Genomics 2013, 14:312 (10 May 2013)

Abstract | Provisional PDF | PubMed

4.

Research article   Open Access

Genome wide analysis of the complete GlnR nitrogen-response regulon in Mycobacterium smegmatis

Victoria A Jenkins, Geraint R Barton, Brian D Robertson, Kerstin J Williams BMC Genomics 2013, 14:301 (4 May 2013)

Abstract | Provisional PDF | PubMed

5.

Research article   Open Access

Functional genomic analysis of bile salt resistance in Enterococcus faecium

Xinglin Zhang, Damien Bierschenk, Janetta Top, Iacovos Anastasiou, Marc JM Bonten, Rob JL Willems, Willem van Schaik BMC Genomics 2013, 14:299 (3 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

6.

Research article   Open Access

Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to Zinc and Cadmium exposure

Géraldine Maynaud, Brigitte Brunel, Damien Mornico, Maxime Durot, Dany Severac, Emeric Dubois, Elisabeth Navarro, Jean-Claude Cleyet-Marel, Antoine Le Quéré BMC Genomics 2013, 14:292 (30 April 2013)

Abstract | Provisional PDF | PubMed

7.

Software   Open Access Highly Accessed

ContigScape: a Cytoscape plugin facilitating microbial genome gap closing

Biao Tang, Qi Wang, Minjun Yang, Feng Xie, Yongqiang Zhu, Ying Zhuo, Shengyue Wang, Hong Gao, Xiaoming Ding, Lixin Zhang, Guoping Zhao, Huajun Zheng BMC Genomics 2013, 14:289 (30 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Research article   Open Access

Acid shock of Listeria monocytogenes at low environmental temperatures induces prfA, epithelial cell invasion, and lethality towards Caenorhabditis elegans

Klaus Neuhaus, Peter Satorhelyi, Kristina Schauer, Siegfried Scherer, Thilo M Fuchs BMC Genomics 2013, 14:285 (27 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

Research article   Open Access

Transcriptional pathways associated with the slow growth phenotype of transformed Anaplasma marginale

Sebastián Aguilar Pierlé, Gena Kenitra Hammac, Guy H Palmer, Kelly A Brayton BMC Genomics 2013, 14:272 (22 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

10.

Research article   Open Access Highly Accessed

Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas

Xuemei Shen, Hongbo Hu, Huasong Peng, Wei Wang, Xuehong Zhang BMC Genomics 2013, 14:271 (22 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

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