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Prokaryote microbial genomics Section edited by Tom Coenye

This section covers the structure and function of the genomes of prokaryotic and archaea microorganisms.

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1.

Research article   Open Access

Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study

Tao Wu, Zhigang Zhang, Bin Liu, Dezhi Hou, Yun Liang, Jie Zhang, Peng Shi BMC Genomics 2013, 14:669 (1 October 2013)

Abstract | Provisional PDF

2.

Research article   Open Access

RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

Sandra Wiegand, Sascha Dietrich, Robert Hertel, Johannes Bongaerts, Stefan Evers, Sonja Volland, Rolf Daniel, Heiko Liesegang BMC Genomics 2013, 14:667 (1 October 2013)

Abstract | Provisional PDF

3.

Research article   Open Access

Comparative genomics reveals distinct host-interacting traits of three major human-associated propionibacteria

Tim N Mak, Monika Schmid, Elzbieta Brzuszkiewicz, Guanghong Zeng, Rikke Meyer, Karen S Sfanos, Volker Brinkmann, Thomas F Meyer, Holger Brüggemann BMC Genomics 2013, 14:640 (22 September 2013)

Abstract | Full text | PDF | PubMed

4.

Correspondence   Open Access

"Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response

Daniel Schindler, Torsten Waldminghaus BMC Genomics 2013, 14:638 (22 September 2013)

Abstract | Provisional PDF | PubMed

5.

Research article   Open Access

Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium

Eduardo H Morales, Bernardo Collao, Prerak T Desai, Iván L Calderón, Fernando Gil, Roberto Luraschi, Steffen Porwollik, Michael McClelland, Claudia P Saavedra BMC Genomics 2013, 14:626 (17 September 2013)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access

Domain exchange at the 3’ end of the gene encoding the fratricide meningococcal two-partner secretion protein A

Jesús Arenas, Kim Schipper, Peter van Ulsen, Arie van der Ende, Jan Tommassen BMC Genomics 2013, 14:622 (14 September 2013)

Abstract | Full text | PDF | PubMed

7.

Research article   Open Access

A combination of improved differential and global RNA-seq reveals pervasive transcription initiation and events in all stages of the life-cycle of functional RNAs in Propionibacterium acnes, a major contributor to wide-spread human disease

Yu-fei Lin, David A, Shuang Guan, Lira Mamanova, Kenneth J McDowall BMC Genomics 2013, 14:620 (14 September 2013)

Abstract | Full text | PDF | PubMed

8.

Research article   Open Access

Transcriptome profiling reveals links between ParS/ParR, MexEF-OprN, and quorum sensing in the regulation of adaptation and virulence in Pseudomonas aeruginosa

Dongping Wang, Candace Seeve, Leland S Pierson, Elizabeth A Pierson BMC Genomics 2013, 14:618 (13 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

Research article   Open Access Highly Accessed

Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria

Ida Porcelli, Mark Reuter, Bruce M Pearson, Thomas Wilhelm, Arnoud HM van Vliet BMC Genomics 2013, 14:616 (12 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

10.

Research article   Open Access

Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ54 (RpoN) regulon of Salmonella Typhimurium LT2

David J Samuels, Jonathan G Frye, Steffen Porwollik, Michael McClelland, Jan Mrázek, Timothy R Hoover, Anna C Karls BMC Genomics 2013, 14:602 (5 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

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