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1.
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An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome
Marco Ferrarini, Marco Moretto, Judson A Ward, Nada ¿urbanovski, Vladimir Stevanovi¿, Lara Giongo, Roberto Viola, Duccio Cavalieri, Riccardo Velasco, Alessandro Cestaro, Daniel J Sargent BMC Genomics 2013, 14:670 (1 October 2013)
Abstract | Provisional PDF
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Editor’s summary
Comparison of PacBio RS single-molecule, realtime (SMRT) sequencing with Illumina HiSeq2000 technology reveals PacBio to be more accurate than Illumina in the de novo assembly of a chloroplast genome due to longer read lengths and lower GC bias. |
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2.
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Stacking resistance to crown gall and nematodes in walnut rootstocks
Sriema L Walawage, Monica T Britton, Charles A Leslie, Sandra L Uratsu, YingYue Li, Abhaya M Dandekar BMC Genomics 2013, 14:668 (1 October 2013)
Abstract | Provisional PDF
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Bolbase: a comprehensive genomics database for Brassica oleracea
Jingyin Yu, Meixia Zhao, Xiaowu Wang, Chaobo Tong, Shunmou Huang, Sadia Tehrim, Yumei Liu, Wei Hua, Shengyi Liu BMC Genomics 2013, 14:664 (30 September 2013)
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4.
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Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress
Yanjie Xu, Shan Gao, Yingjie Yang, Mingyun Huang, Lina Cheng, Qian Wei, Zhangjun Fei, Junping Gao, Bo Hong BMC Genomics 2013, 14:662 (28 September 2013)
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| PubMed
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5.
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Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits
Richard S Fletcher, Jack L Mullen, Seth Yoder, William L Bauerle, Gretchen Reuning, Saunak Sen, Eli Meyer, Thomas E Juenger, John K McKay BMC Genomics 2013, 14:655 (25 September 2013)
Abstract | Provisional PDF
| PubMed
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6.
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HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids
Aziz Mithani, Eric J Belfield, Carly Brown, Caifu Jiang, Lindsey J Leach, Nicholas P Harberd BMC Genomics 2013, 14:653 (24 September 2013)
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| PubMed
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7.
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Genome-wide copy number variations in Oryza sativa L.
Ping Yu, Cai-Hong Wang, Qun Xu, Yue Feng, Xiao-Ping Yuan, Han-Yong Yu, Yi-Ping Wang, Sheng-Xiang Tang, Xing-Hua Wei BMC Genomics 2013, 14:649 (23 September 2013)
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| ePUB | PubMed
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Comprehensive transcriptomic study on horse gram (Macrotyloma uniflorum): De novo assembly, functional characterization and comparative analysis in relation to drought stress
Jyoti Bhardwaj, Rohit Chauhan, Mohit Kumar Swarnkar, Rakesh Kumar Chahota, Anil Kumar Singh, Ravi Shankar, Sudesh Kumar Yadav BMC Genomics 2013, 14:647 (23 September 2013)
Abstract | Provisional PDF
| PubMed
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9.
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BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower
Maren Livaja, Yu Wang, Silke Wieckhorst, Grit Haseneyer, Michael Seidel, Volker Hahn, Steven J Knapp, Stefan Taudien, Chris-Carolin Schön, Eva Bauer BMC Genomics 2013, 14:628 (17 September 2013)
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10.
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Leaf cDNA-AFLP analysis of two citrus species differing in manganese tolerance in response to long-term manganese-toxicity
Chen-Ping Zhou, Yi-Ping Qi, Xiang You, Lin-Tong Yang, Peng Guo, Xin Ye, Xin-Xing Zhou, Feng-Jiao Ke, Li-Song Chen BMC Genomics 2013, 14:621 (14 September 2013)
Abstract | Full text | PDF
| PubMed
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