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Eukaryote microbial genomics Section edited by Vishwanath Iyer

This section covers the structure and function of genomes of single-celled parasites, yeasts, fungi and viruses.

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1.

Research article   Open Access

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, Wouter de Bruijn, Kerry S Burton, Michael P Challen, Pedro M Coutinho, Daniel C Eastwood, Birgit S Gruben, Miia R Mäkelä, Francis Martin, Marina Nadal, Joost van den Brink, Ad Wiebenga, Miaomiao Zhou, Bernard Henrissat, Mirjam Kabel, Harry Gruppen, Ronald P de Vries BMC Genomics 2013, 14:663 (30 September 2013)

Abstract | Provisional PDF | PubMed

2.

Research article   Open Access

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides

Monique Royer, Ralf Koebnik, Mélanie Marguerettaz, Valérie Barbe, Guillaume P Robin, Chrystelle Brin, Sébastien Carrere, Camila Gomez, Manuela Hügelland, Ginka H Völler, Julie Noëll, Isabelle Pieretti, Saskia Rausch, Valérie Verdier, Stéphane Poussier, Philippe Rott, Roderich D Süssmuth, Stéphane Cociancich BMC Genomics 2013, 14:658 (27 September 2013)

Abstract | Full text | PDF | PubMed

3.

Research article   Open Access

Targets of light signalling in Trichoderma reesei

Doris Tisch, Monika Schmoll BMC Genomics 2013, 14:657 (26 September 2013)

Abstract | Provisional PDF | PubMed

4.

Research article   Open Access

Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent

Janja Zajc, Yongfeng Liu, Wenkui Dai, Zhenyu Yang, Jingzhi Hu, Cene Gostinčar, Nina Gunde-Cimerman BMC Genomics 2013, 14:617 (13 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

5.

Research article   Open Access Highly Accessed

RNA-seq analyses of gene expression in the microsclerotia of Verticillium dahliae

Dechassa Duressa, Amy Anchieta, Dongquan Chen, Anna Klimes, Maria D Garcia-Pedrajas, Katherine F Dobinson, Steven J Klosterman BMC Genomics 2013, 14:607 (9 September 2013)

Abstract | Provisional PDF | PubMed

6.

Research article   Open Access

Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

Laure Ries, Steven T Pullan, Stéphane Delmas, Sunir Malla, Martin J Blythe, David B Archer BMC Genomics 2013, 14:541 (9 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

7.

Research article   Open Access

Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile

Jenna Oberstaller, Sandeep J Joseph, Jessica C Kissinger BMC Genomics 2013, 14:516 (29 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Research article   Open Access Highly Accessed

A predicted functional gene network for the plant pathogen Phytophthora infestans as a framework for genomic biology

Michael F Seidl, Adrian Schneider, Francine Govers, Berend Snel BMC Genomics 2013, 14:483 (17 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

Research article   Open Access

Distinct roles of the Gcn5 histone acetyltransferase revealed during transient stress-induced reprogramming of the genome

Yongtao Xue-Franzén, Johan Henriksson, Thomas R Bürglin, Anthony PH Wright BMC Genomics 2013, 14:479 (16 July 2013)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access Highly Accessed

Genetic basis for phenotypic differences between different Toxoplasma gondii type I strains

Ninghan Yang, Andrew Farrell, Wendy Niedelman, Mariane Melo, Diana Lu, Lindsay Julien, Gabor T Marth, Marc-Jan Gubbels, Jeroen PJ Saeij BMC Genomics 2013, 14:467 (10 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

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