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Eukaryote microbial genomics

This section covers the structure and function of genomes of single-celled parasites, yeasts, fungi and viruses.

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1.

Research article   Open Access

Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis

Li Chen, Qun Yue, Xinyu Zhang, Meichun Xiang, Chengshu Wang, Shaojie Li, Yongsheng Che, Francisco Javier Ortiz-López, Gerald F Bills, Xingzhong Liu, Zhiqiang An BMC Genomics 2013, 14:339 (20 May 2013)

Abstract | Provisional PDF | PubMed

2.

Research article   Open Access

Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae

Vidhyavathi Raman, Stacey A Simon, Amanda Romag, Feray Demirci, Sandra M Mathioni, Jixian Zhai, Blake C Meyers, Nicole M Donofrio BMC Genomics 2013, 14:326 (12 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

3.

Research article   Open Access

Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information

Ricardo de Matos Simoes, Matthias Dehmer, Frank Emmert-Streib BMC Genomics 2013, 14:324 (11 May 2013)

Abstract | Provisional PDF | PubMed

4.

Research article   Open Access

Analysis of the spatial and temporal arrangement of transcripts over intergenic regions in the human malarial parasite Plasmodium falciparum

Karen Russell, Sandra Hasenkamp, Richard Emes, Paul Horrocks BMC Genomics 2013, 14:267 (19 April 2013)

Abstract | Provisional PDF | PubMed

5.

Research article   Open Access Highly Accessed

Changes in the transcriptome of the malaria parasite Plasmodium falciparum during the initial phase of transmission from the human to the mosquito

Che Julius Ngwa, Matthias Scheuermayer, Gunnar Rudolf Mair, Selina Kern, Thomas Brügl, Christine Clara Wirth, Makoah Nigel Aminake, Jochen Wiesner, Rainer Fischer, Andreas Vilcinskas, Gabriele Pradel BMC Genomics 2013, 14:256 (15 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

6.

Research article   Open Access Highly Accessed

A multistep genomic screen identifies new genes required for repair of DNA double-strand breaks in Saccharomyces cerevisiae

Jennifer Summers McKinney, Sunaina Sethi, Jennifer DeMars Tripp, Thuy N Nguyen, Brian A Sanderson, James W Westmoreland, Michael A Resnick, L Kevin Lewis BMC Genomics 2013, 14:251 (15 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

7.

Research article   Open Access Highly Accessed

Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing

Michaela Novodvorska, Kimran Hayer, Steven T Pullan, Raymond Wilson, Martin J Blythe, Hein Stam, Malcolm Stratford, David B Archer BMC Genomics 2013, 14:246 (11 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Research article   Open Access Highly Accessed

High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family

Tami R McDonald, Olaf Mueller, Fred S Dietrich, François Lutzoni BMC Genomics 2013, 14:225 (4 April 2013)

Abstract | Full text | PDF | PubMed

9.

Research article   Open Access Highly Accessed

The transcriptome of Leishmania major in the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq

Alberto Rastrojo, Fernando Carrasco-Ramiro, Diana Martín, Antonio Crespillo, Rosa M Reguera, Begoña Aguado, Jose M Requena BMC Genomics 2013, 14:223 (4 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

10.

Research article   Open Access Highly Accessed

Species and condition specific adaptation of the transcriptional landscapes in Candida albicans and Candida dubliniensis

Christian Grumaz, Stefan Lorenz, Philip Stevens, Elena Lindemann, Ulrike Schöck, Julia Retey, Steffen Rupp, Kai Sohn BMC Genomics 2013, 14:212 (2 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

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