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Comparative and evolutionary genomics Section edited by Takashi Gojobori

This section covers comparative genomic studies and novel methods, including phylogenetic analyses, evolutionary genomics and all studies with a cross-taxonomic focus.

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1.

Research article   Open Access

Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees

Pablo Cingolani, Xiaoyi Cao, Radhika S Khetani, Chieh-Chun Chen, Melissa Coon, Alya¿a Sammak, Aliccia Bollig-Fischer, Susan Land, Yun Huang, Matthew E Hudson, Mark D Garfinkel, Sheng Zhong, Gene E Robinson, Douglas M Ruden BMC Genomics 2013, 14:666 (30 September 2013)

Abstract | Provisional PDF

2.

Research article   Open Access

Comparison of RefSeq protein-coding regions in human and vertebrate genomes

Jessica H Fong, Terence D Murphy, Kim D Pruitt BMC Genomics 2013, 14:654 (25 September 2013)

Abstract | Full text | PDF | PubMed

3.

Research article   Open Access

Different patterns of gene structure divergence following gene duplication in Arabidopsis

Yupeng Wang, Xu Tan, Andrew H Paterson BMC Genomics 2013, 14:652 (24 September 2013)

Abstract | Full text | PDF | PubMed

4.

Research article   Open Access

Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication

Hui Xiang, Xin Li, Fangyin Dai, Xun Xu, Anjiang Tan, Lei Chen, Guojie Zhang, Yun Ding, Qiye Li, Jinmin Lian, Andrew Willden, Qiuhong Guo, Qingyou Xia, Jun Wang, Wen Wang BMC Genomics 2013, 14:646 (23 September 2013)

Abstract | Provisional PDF | PubMed

5.

Research article   Open Access

Comparative genomics reveals that a fish pathogenic bacterium Edwardsiella tarda has acquired the locus of enterocyte effacement (LEE) through horizontal gene transfer

Yoji Nakamura, Tomokazu Takano, Motoshige Yasuike, Takamitsu Sakai, Tomomasa Matsuyama, Motohiko Sano BMC Genomics 2013, 14:642 (22 September 2013)

Abstract | Provisional PDF | PubMed

6.

Research article   Open Access

Model of gene expression in extreme cold - reference transcriptome for the high-Antarctic cryopelagic notothenioid fish Pagothenia borchgrevinki

Kevin T Bilyk, C-H Cheng BMC Genomics 2013, 14:634 (21 September 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Comparative transcriptome analysis of the Antarctic fish P. Borchgrevinki, identifies genes involved in cold adaptation and provides insight into the evolution of molecular mechanisms for fish survival in different water temperatures - an important feature during climate change.

7.

Research article   Open Access

Afrobatrachian mitochondrial genomes: genome reorganization, gene rearrangement mechanisms, and evolutionary trends of duplicated and rearranged genes

Atsushi Kurabayashi, Masayuki Sumida BMC Genomics 2013, 14:633 (21 September 2013)

Abstract | Provisional PDF | PubMed

8.

Database   Open Access

FishMicrosat: a microsatellite database of commercially important fishes and shellfishes of the Indian subcontinent

Naresh Sahebrao Nagpure, Iliyas Rashid, Rameshwar Pati, Ajey Kumar Pathak, Mahender Singh, Shri Prakash Singh, Uttam Kumar Sarkar BMC Genomics 2013, 14:630 (18 September 2013)

Abstract | Provisional PDF | PubMed

9.

Research article   Open Access

Comparative genomics of emerging pathogens in the Candida glabrata clade

Toni Gabaldón, Tiphaine Martin, Marina Marcet-Houben, Pascal Durrens, Monique Bolotin-Fukuhara, Olivier Lespinet, Sylvie Arnaise, Stéphanie Boisnard, Gabriela Aguileta, Ralitsa Atanasova, Christiane Bouchier, Arnaud Couloux, Sophie Creno, Jose Almeida Cruz, Hugo Devillers, Adela Enache-Angoulvant, Juliette Guitard, Laure Jaouen, Laurence Ma, Christian Marck, Cécile Neuvéglise, Eric Pelletier, Amélie Pinard, Julie Poulain, Julien Recoquillay, Eric Westhof, Patrick Wincker, Bernard Dujon, Christophe Hennequin, Cécile Fairhead et al. BMC Genomics 2013, 14:623 (14 September 2013)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access Highly Accessed

Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes

James R Doroghazi, William W Metcalf BMC Genomics 2013, 14:611 (11 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

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