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	1. 11001 Accesses	Research article Gene expression analysis of Drosophilaa Manf mutants reveals perturbations in membrane traffic and major metabolic changes Mari Palgi, Dario Greco, Riitta Lindström, Petri Auvinen, Tapio I Heino BMC Genomics 2012, 13:134 (11 April 2012) Abstract \| Full text \| PDF \| PubMed
	2. 5510 Accesses	Research article A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers Michael A Quail, Miriam Smith, Paul Coupland, Thomas D Otto, Simon R Harris, Thomas R Connor, Anna Bertoni, Harold P Swerdlow, Yong Gu BMC Genomics 2012, 13:341 (24 July 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Sequencing of four microbial genomes with widely differing GC content is compared on performance using three major new platforms: Ion Torrent PGM, Pacific Biosciences RS, and illumina MiSeq versus Illumina HiSeq system.
	3. 1913 Accesses	Research article Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi Zhongtao Zhao, Huiquan Liu, Chenfang Wang, Jin-Rong Xu BMC Genomics 2013, 14:274 (23 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	4. 1829 Accesses	Research article Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors Dario Cantu, Vanesa Segovia, Daniel MacLean, Rosemary Bayles, Xianming Chen, Sophien Kamoun, Jorge Dubcovsky, Diane GO Saunders, Cristobal Uauy BMC Genomics 2013, 14:270 (22 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	5. 1816 Accesses	Research article Gene promoters show chromosome-specificity and reveal chromosome territories in humans Paul Gagniuc, Constantin Ionescu-Tirgoviste BMC Genomics 2013, 14:278 (24 April 2013) Abstract \| Provisional PDF \| PubMed
	6. 1573 Accesses	Methodology article A data-driven approach to preprocessing Illumina 450K methylation array data Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk BMC Genomics 2013, 14:293 (1 May 2013) Abstract \| Provisional PDF \| PubMed
	7. 1457 Accesses	Research article LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana Michaela Hundertmark, Dirk K Hincha BMC Genomics 2008, 9:118 (4 March 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	8. 1451 Accesses	Research article Characterization of human plasma-derived exosomal RNAs by deep sequencing Xiaoyi Huang, Tiezheng Yuan, Michael Tschannen, Zhifu Sun, Howard Jacob, Meijun Du, Meihua Liang, Rachel L Dittmar, Yong Liu, Mingyu Liang, Manish Kohli, Stephen N Thibodeau, Lisa Boardman, Liang Wang BMC Genomics 2013, 14:319 (10 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	9. 1364 Accesses	Software ContigScape: a Cytoscape plugin facilitating microbial genome gap closing Biao Tang, Qi Wang, Minjun Yang, Feng Xie, Yongqiang Zhu, Ying Zhuo, Shengyue Wang, Hong Gao, Xiaoming Ding, Lixin Zhang, Guoping Zhao, Huajun Zheng BMC Genomics 2013, 14:289 (30 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	10. 1242 Accesses	Research article Integrated miRNA, mRNA and protein expression analysis reveals the role of post-transcriptional regulation in controlling CHO cell growth rate Colin Clarke, Michael Henry, Padraig Doolan, Shane Kelly, Sinead Aherne, Noelia Sanchez, Paul Kelly, Paula Kinsella, Laura Breen, Stephen F Madden, Lin Zhang, Mark Leonard, Martin Clynes, Paula Meleady, Niall Barron BMC Genomics 2012, 13:656 (21 November 2012) Abstract \| Full text \| PDF \| PubMed
	11. 1239 Accesses	Research article Sequencing platform and library preparation choices impact viral metagenomes Sergei A Solonenko, J Ignacio-Espinoza, Adriana Alberti, Corinne Cruaud, Steven Hallam, Kostas Konstantinidis, Gene Tyson, Patrick Wincker, Matthew B Sullivan BMC Genomics 2013, 14:320 (10 May 2013) Abstract \| Full text \| PDF \| PubMed
	12. 1203 Accesses	Research article Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro Nicolas C Nalpas, Stephen DE Park, David A Magee, Maria Taraktsoglou, John A Browne, Kevin M Conlon, Kévin Rue-Albrecht, Kate E Killick, Karsten Hokamp, Amanda J Lohan, Brendan J Loftus, Eamonn Gormley, Stephen V Gordon, David E MacHugh BMC Genomics 2013, 14:230 (8 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	13. 1163 Accesses	Research article Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice Tingting Lu, Chuanrang Zhu, Guojun Lu, Yunli Guo, Yan Zhou, Zhiyong Zhang, Yan Zhao, Wenjun Li, Ying Lu, Weihua Tang, Qi Feng, Bin Han BMC Genomics 2012, 13:721 (22 December 2012) Abstract \| Full text \| PDF \| PubMed
	14. 1161 Accesses	Research article Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra Claire T O¿Quin, Alexi C Drilea, Matthew A Conte, Thomas D Kocher BMC Genomics 2013, 14:287 (27 April 2013) Abstract \| Provisional PDF \| PubMed
	15. 1156 Accesses	Research article Transcriptomic analysis of differentially expressed genes during anther development in genetic male sterile and wild type cotton by digital gene-expression profiling Mingming Wei, Meizhen Song, Shuli Fan, Shuxun Yu BMC Genomics 2013, 14:97 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
	16. 1141 Accesses	Research article Genome-wide association study of sleep in Drosophila melanogaster Susan T Harbison, Lenovia J McCoy, Trudy FC Mackay BMC Genomics 2013, 14:281 (25 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	17. 1132 Accesses	Research article Transcriptome analysis of Sacha Inchi (Plukenetia volubilis L.) seeds at two developmental stages Xiaojuan Wang, Ronghua Xu, Ruling Wang, Aizhong Liu BMC Genomics 2012, 13:716 (20 December 2012) Abstract \| Full text \| PDF \| PubMed
	18. 1132 Accesses	Research article Pause-melting misalignment: a novel model for the birth and motif indel of tandem repeats in the mitochondrial genome Wei Shi, Xiao-Yu Kong, Zhong-Ming Wang, Shan-Shan Yu, Hai-Xia Chen, Elizabeth A De Stasio BMC Genomics 2013, 14:103 (15 February 2013) Abstract \| Full text \| PDF \| PubMed
	19. 1149 Accesses	Methodology article Optimizing de novo assembly of short-read RNA-seq data for phylogenomics Ya Yang, Stephen A Smith BMC Genomics 2013, 14:328 (14 May 2013) Abstract \| Provisional PDF \| PubMed
	20. 1082 Accesses	Research article A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly Warren R Francis, Lynne M Christianson, Rainer Kiko, Meghan L Powers, Nathan C Shaner, Steven H D Haddock BMC Genomics 2013, 14:167 (12 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	21. 1081 Accesses	Research article Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas Xuemei Shen, Hongbo Hu, Huasong Peng, Wei Wang, Xuehong Zhang BMC Genomics 2013, 14:271 (22 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	22. 1069 Accesses	Research article Draft genome sequence of the rubber tree Hevea brasiliensis Ahmad Yamin Abdul Rahman, Abhilash O Usharraj, Biswapriya B Misra, Gincy P Thottathil, Kandakumar Jayasekaran, Yun Feng, Shaobin Hou, Su Yean Ong, Fui Ling Ng, Ling Sze Lee, Hock Siew Tan, Muhd Khairul Luqman Muhd Sakaff, Beng Soon Teh, Bee Khoo, Siti Suriawati Badai, Nurohaida Ab Aziz, Anton Yuryev, Bjarne Knudsen, Alexandre Dionne-Laporte, Nokuthula P Mchunu, Qingyi Yu, Brennick J Langston, Tracey Allen K Freitas, Aaron G Young, Rui Chen, Lei Wang, Nazalan Najimudin, Jennifer A Saito, Maqsudul Alam BMC Genomics 2013, 14:75 (2 February 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The draft genome of the rubber tree Hevea brasiliensis is almost 80% repetitive DNA with 12.7% of genes models identified being unique to this species, including key rubber biosynthesis and disease resistance genes
	23. 1052 Accesses	Research article A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits Harsh Raman, Rosy Raman, Andrzej Kilian, Frank Detering, Yan Long, David Edwards, Isobel AP Parkin, Andrew G Sharpe, Matthew N Nelson, Nick Larkan, Jun Zou, Jinling Meng, M Naveed Aslam, Jacqueline Batley, Wallace A Cowling, Derek Lydiate BMC Genomics 2013, 14:277 (23 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	24. 1029 Accesses	Research article Transcriptomic analysis of ‘Suli’ pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq Guoqin Liu, Wanshun Li, Penghua Zheng, Tong Xu, Lijuan Chen, Dongfeng Liu, Sayed Hussain, Yuanwen Teng BMC Genomics 2012, 13:700 (12 December 2012) Abstract \| Full text \| PDF \| PubMed
	25. 1027 Accesses	Reviewer acknowledgement Reviewer Acknowledgement 2012 Catherine M Rice BMC Genomics 2013, 14:231 (2 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	26. 1017 Accesses	Research article Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna Zhen-hua Dang, Lin-lin Zheng, Jia Wang, Zhe Gao, Shu-biao Wu, Zhi Qi, Ying-chun Wang BMC Genomics 2013, 14:29 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	27. 1008 Accesses	Research article A microbial detection array (MDA) for viral and bacterial detection Shea N Gardner, Crystal J Jaing, Kevin S McLoughlin, Tom R Slezak BMC Genomics 2010, 11:668 (25 November 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	28. 1007 Accesses	Methodology article Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes Petr Dmitriev, Ana Barat, Anna Polesskaya, Mary J O’Connell, Thomas Robert, Philippe Dessen, Thomas A Walsh, Vladimir Lazar, Ahmed Turki, Gilles Carnac, Dalila Laoudj-Chenivesse, Marc Lipinski, Yegor S Vassetzky BMC Genomics 2013, 14:265 (18 April 2013) Abstract \| Full text \| PDF \| PubMed
	29. 999 Accesses	Research article Origins of amyloid-β William G Tharp, Indra Sarkar BMC Genomics 2013, 14:290 (30 April 2013) Abstract \| Full text \| PDF \| PubMed
	30. 988 Accesses	Research article Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools Veljo Kisand, Teresa Lettieri BMC Genomics 2013, 14:211 (1 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	31. 962 Accesses	Research article Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae Vidhyavathi Raman, Stacey A Simon, Amanda Romag, Feray Demirci, Sandra M Mathioni, Jixian Zhai, Blake C Meyers, Nicole M Donofrio BMC Genomics 2013, 14:326 (12 May 2013) Abstract \| Full text \| PDF \| PubMed
	32. 960 Accesses	Research article Alterations in gene expression in Caenorhabditis elegans associated with organophosphate pesticide intoxication and recovery John A Lewis, Elizabeth A Gehman, Christine E Baer, David A Jackson BMC Genomics 2013, 14:291 (30 April 2013) Abstract \| Provisional PDF \| PubMed
	33. 951 Accesses	Research article Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing Robert Pinard, Alex de Winter, Gary J Sarkis, Mark B Gerstein, Karrie R Tartaro, Ramona N Plant, Michael Egholm, Jonathan M Rothberg, John H Leamon BMC Genomics 2006, 7:216 (23 August 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology
	34. 939 Accesses	Research article Genome-wide promoter methylation profile of human testis and epididymis: identified from cell-free seminal DNA Chunlin Wu, Xiaofang Ding, Honggang Li, Changhong Zhu, Chengliang Xiong BMC Genomics 2013, 14:288 (28 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	35. 909 Accesses	Research article Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing Michaela Novodvorska, Kimran Hayer, Steven T Pullan, Raymond Wilson, Martin J Blythe, Hein Stam, Malcolm Stratford, David B Archer BMC Genomics 2013, 14:246 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	36. 895 Accesses	Research article Mitochondrial genomes and Doubly Uniparental Inheritance: new insights from Musculista senhousia sex-linked mitochondrial DNAs (Bivalvia Mytilidae) Marco Passamonti, Andrea Ricci, Liliana Milani, Fabrizio Ghiselli BMC Genomics 2011, 12:442 (6 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	37. 895 Accesses	Research article Transcriptome analysis of Cymbidium sinense and its application to the identification of genes associated with floral development Jianxia Zhang, Kunlin Wu, Songjun Zeng, Jaime A Teixeira da Silva, Xiaolan Zhao, Chang-En Tian, Haoqiang Xia, Jun Duan BMC Genomics 2013, 14:279 (24 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	38. 892 Accesses	Research article Sex-biased gene expression in the brown alga Fucus vesiculosus Maria João F Martins, Catarina F Mota, Gareth A Pearson BMC Genomics 2013, 14:294 (1 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	39. 883 Accesses	Research article 5′ tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction Joseph M Dhahbi, Stephen R Spindler, Hani Atamna, Amy Yamakawa, Dario Boffelli, Patricia Mote, David IK Martin BMC Genomics 2013, 14:298 (2 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	40. 879 Accesses	Methodology article Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs Alexis Christoforides, John D Carpten, Glen J Weiss, Michael J Demeure, Daniel D Von Hoff, David W Craig BMC Genomics 2013, 14:302 (4 May 2013) Abstract \| Provisional PDF \| PubMed
	41. 867 Accesses	Research article Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence Chris M Rands, Aaron Darling, Matthew Fujita, Lesheng Kong, Matthew T Webster, Céline Clabaut, Richard D Emes, Andreas Heger, Stephen Meader, Michael Brent Hawkins, Michael B Eisen, Clotilde Teiling, Jason Affourtit, Benjamin Boese, Peter R Grant, Barbara Rosemary Grant, Jonathan A Eisen, Arhat Abzhanov, Chris P Ponting BMC Genomics 2013, 14:95 (12 February 2013) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology \| Editor’s summary 204 years after Charles Darwin’s birth, sequencing of the genome of the Darwin’s Finch Geospiza magnirostris reveals over 13,000 predicted genes, of which two under positive selection may have contributed to beak morphology evolution, which so interested Darwin.
	42. 863 Accesses	Research article Functional genomic analysis of bile salt resistance in Enterococcus faecium Xinglin Zhang, Damien Bierschenk, Janetta Top, Iacovos Anastasiou, Marc JM Bonten, Rob JL Willems, Willem van Schaik BMC Genomics 2013, 14:299 (3 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	43. 860 Accesses	Research article Gene expression patterns following unilateral traumatic brain injury reveals a local pro-inflammatory and remote anti-inflammatory response Todd E White, Gregory D Ford, Monique C Surles-Zeigler, Alicia S Gates, Michelle C LaPlaca, Byron D Ford BMC Genomics 2013, 14:282 (25 April 2013) Abstract \| Provisional PDF \| PubMed
	44. 859 Accesses	Research article The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen's lifestyle Anthony Zoropogui, Petar Pujic, Philippe Normand, Valérie Barbe, Patrick Belli, Arnault Graindorge, David Roche, David Vallenet, Sophie Mangenot, Patrick Boiron, Véronica Rodriguez-Nava, Sebastien Ribun, Yves Richard, Benoit Cournoyer, Didier Blaha BMC Genomics 2013, 14:286 (27 April 2013) Abstract \| Provisional PDF \| PubMed
	45. 849 Accesses	Research article Global remodeling of nucleosome positions in C. elegans George Locke, Devorah Haberman, Steven M Johnson, Alexandre V Morozov BMC Genomics 2013, 14:284 (26 April 2013) Abstract \| Provisional PDF \| PubMed
	46. 832 Accesses	Expression of concern Expression of concern: subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances Maria K Kowalczuk, Shreeya Nanda, Elizabeth C Moylan BMC Genomics 2013, 14:260 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	47. 830 Accesses	Research article A roadmap of cell-type specific gene expression during sequential stages of the arbuscular mycorrhiza symbiosis Claudia Hogekamp, Helge Küster BMC Genomics 2013, 14:306 (7 May 2013) Abstract \| Provisional PDF \| PubMed
	48. 830 Accesses	Methodology article A simple and reproducible breast cancer prognostic test Luigi Marchionni, Bahman Afsari, Donald Geman, Jeffrey T Leek BMC Genomics 2013, 14:336 (17 May 2013) Abstract \| Provisional PDF
	49. 803 Accesses	Research article RAD tag sequencing as a source of SNP markers in Cynara cardunculus L Davide Scaglione, Alberto Acquadro, Ezio Portis, Matteo Tirone, Steven J Knapp, Sergio Lanteri BMC Genomics 2012, 13:3 (3 January 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	50. 801 Accesses	Research article Study of whole genome linkage disequilibrium in Nellore cattle Rafael Espigolan, Fernando Baldi, Arione A Boligon, Fabio RP Souza, Daniel GM Gordo, Rafael L Tonussi, Diércles F Cardoso, Henrique N Oliveira, Humberto Tonhati, Mehdi Sargolzaei, Flavio S Schenkel, Roberto Carvalheiro, Jesus A Ferro, Lucia G Albuquerque BMC Genomics 2013, 14:305 (5 May 2013) Abstract \| Provisional PDF \| PubMed