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	1. 9047 Accesses	Research article Gene expression analysis of Drosophilaa Manf mutants reveals perturbations in membrane traffic and major metabolic changes Mari Palgi, Dario Greco, Riitta Lindström, Petri Auvinen, Tapio I Heino BMC Genomics 2012, 13:134 (11 April 2012) Abstract \| Full text \| PDF \| PubMed
	2. 5594 Accesses	Research article A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers Michael A Quail, Miriam Smith, Paul Coupland, Thomas D Otto, Simon R Harris, Thomas R Connor, Anna Bertoni, Harold P Swerdlow, Yong Gu BMC Genomics 2012, 13:341 (24 July 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Sequencing of four microbial genomes with widely differing GC content is compared on performance using three major new platforms: Ion Torrent PGM, Pacific Biosciences RS, and illumina MiSeq versus Illumina HiSeq system.
	3. 1844 Accesses	Research article Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi Zhongtao Zhao, Huiquan Liu, Chenfang Wang, Jin-Rong Xu BMC Genomics 2013, 14:274 (23 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	4. 1778 Accesses	Research article Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors Dario Cantu, Vanesa Segovia, Daniel MacLean, Rosemary Bayles, Xianming Chen, Sophien Kamoun, Jorge Dubcovsky, Diane GO Saunders, Cristobal Uauy BMC Genomics 2013, 14:270 (22 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	5. 1765 Accesses	Research article Gene promoters show chromosome-specificity and reveal chromosome territories in humans Paul Gagniuc, Constantin Ionescu-Tirgoviste BMC Genomics 2013, 14:278 (24 April 2013) Abstract \| Provisional PDF \| PubMed
	6. 1613 Accesses	Research article LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana Michaela Hundertmark, Dirk K Hincha BMC Genomics 2008, 9:118 (4 March 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	7. 1462 Accesses	Methodology article A data-driven approach to preprocessing Illumina 450K methylation array data Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk BMC Genomics 2013, 14:293 (1 May 2013) Abstract \| Provisional PDF \| PubMed
	8. 1321 Accesses	Research article Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro Nicolas C Nalpas, Stephen DE Park, David A Magee, Maria Taraktsoglou, John A Browne, Kevin M Conlon, Kévin Rue-Albrecht, Kate E Killick, Karsten Hokamp, Amanda J Lohan, Brendan J Loftus, Eamonn Gormley, Stephen V Gordon, David E MacHugh BMC Genomics 2013, 14:230 (8 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	9. 1309 Accesses	Research article Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice Tingting Lu, Chuanrang Zhu, Guojun Lu, Yunli Guo, Yan Zhou, Zhiyong Zhang, Yan Zhao, Wenjun Li, Ying Lu, Weihua Tang, Qi Feng, Bin Han BMC Genomics 2012, 13:721 (22 December 2012) Abstract \| Full text \| PDF \| PubMed
	10. 1311 Accesses	Software ContigScape: a Cytoscape plugin facilitating microbial genome gap closing Biao Tang, Qi Wang, Minjun Yang, Feng Xie, Yongqiang Zhu, Ying Zhuo, Shengyue Wang, Hong Gao, Xiaoming Ding, Lixin Zhang, Guoping Zhao, Huajun Zheng BMC Genomics 2013, 14:289 (30 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	11. 1276 Accesses	Research article Transcriptomic analysis of differentially expressed genes during anther development in genetic male sterile and wild type cotton by digital gene-expression profiling Mingming Wei, Meizhen Song, Shuli Fan, Shuxun Yu BMC Genomics 2013, 14:97 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
	12. 1264 Accesses	Research article Transcriptome analysis of Sacha Inchi (Plukenetia volubilis L.) seeds at two developmental stages Xiaojuan Wang, Ronghua Xu, Ruling Wang, Aizhong Liu BMC Genomics 2012, 13:716 (20 December 2012) Abstract \| Full text \| PDF \| PubMed
	13. 1242 Accesses	Methodology article Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes Petr Dmitriev, Ana Barat, Anna Polesskaya, Mary J O’Connell, Thomas Robert, Philippe Dessen, Thomas A Walsh, Vladimir Lazar, Ahmed Turki, Gilles Carnac, Dalila Laoudj-Chenivesse, Marc Lipinski, Yegor S Vassetzky BMC Genomics 2013, 14:265 (18 April 2013) Abstract \| Full text \| PDF \| PubMed
	14. 1236 Accesses	Research article Integrated miRNA, mRNA and protein expression analysis reveals the role of post-transcriptional regulation in controlling CHO cell growth rate Colin Clarke, Michael Henry, Padraig Doolan, Shane Kelly, Sinead Aherne, Noelia Sanchez, Paul Kelly, Paula Kinsella, Laura Breen, Stephen F Madden, Lin Zhang, Mark Leonard, Martin Clynes, Paula Meleady, Niall Barron BMC Genomics 2012, 13:656 (21 November 2012) Abstract \| Full text \| PDF \| PubMed
	15. 1180 Accesses	Research article Characterization of human plasma-derived exosomal RNAs by deep sequencing Xiaoyi Huang, Tiezheng Yuan, Michael Tschannen, Zhifu Sun, Howard Jacob, Meijun Du, Meihua Liang, Rachel L Dittmar, Yong Liu, Mingyu Liang, Manish Kohli, Stephen N Thibodeau, Lisa Boardman, Liang Wang BMC Genomics 2013, 14:319 (10 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	16. 1165 Accesses	Research article Transcriptomic analysis of ‘Suli’ pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq Guoqin Liu, Wanshun Li, Penghua Zheng, Tong Xu, Lijuan Chen, Dongfeng Liu, Sayed Hussain, Yuanwen Teng BMC Genomics 2012, 13:700 (12 December 2012) Abstract \| Full text \| PDF \| PubMed
	17. 1140 Accesses	Research article Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna Zhen-hua Dang, Lin-lin Zheng, Jia Wang, Zhe Gao, Shu-biao Wu, Zhi Qi, Ying-chun Wang BMC Genomics 2013, 14:29 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	18. 1117 Accesses	Research article Genome-wide association study of sleep in Drosophila melanogaster Susan T Harbison, Lenovia J McCoy, Trudy FC Mackay BMC Genomics 2013, 14:281 (25 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	19. 1105 Accesses	Research article Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra Claire T O¿Quin, Alexi C Drilea, Matthew A Conte, Thomas D Kocher BMC Genomics 2013, 14:287 (27 April 2013) Abstract \| Provisional PDF \| PubMed
	20. 1097 Accesses	Research article A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly Warren R Francis, Lynne M Christianson, Rainer Kiko, Meghan L Powers, Nathan C Shaner, Steven H D Haddock BMC Genomics 2013, 14:167 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
	21. 1092 Accesses	Research article Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools Veljo Kisand, Teresa Lettieri BMC Genomics 2013, 14:211 (1 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	22. 1083 Accesses	Expression of concern Expression of concern: subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances Maria K Kowalczuk, Shreeya Nanda, Elizabeth C Moylan BMC Genomics 2013, 14:260 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	23. 1075 Accesses	Research article Pause-melting misalignment: a novel model for the birth and motif indel of tandem repeats in the mitochondrial genome Wei Shi, Xiao-Yu Kong, Zhong-Ming Wang, Shan-Shan Yu, Hai-Xia Chen, Elizabeth A De Stasio BMC Genomics 2013, 14:103 (15 February 2013) Abstract \| Full text \| PDF \| PubMed
	24. 1069 Accesses	Research article A microbial detection array (MDA) for viral and bacterial detection Shea N Gardner, Crystal J Jaing, Kevin S McLoughlin, Tom R Slezak BMC Genomics 2010, 11:668 (25 November 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	25. 1079 Accesses	Research article Sequencing platform and library preparation choices impact viral metagenomes Sergei A Solonenko, J Ignacio-Espinoza, Adriana Alberti, Corinne Cruaud, Steven Hallam, Kostas Konstantinidis, Gene Tyson, Patrick Wincker, Matthew B Sullivan BMC Genomics 2013, 14:320 (10 May 2013) Abstract \| Full text \| PDF \| PubMed
	26. 1044 Accesses	Research article Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas Xuemei Shen, Hongbo Hu, Huasong Peng, Wei Wang, Xuehong Zhang BMC Genomics 2013, 14:271 (22 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	27. 1041 Accesses	Research article Draft genome sequence of the rubber tree Hevea brasiliensis Ahmad Yamin Abdul Rahman, Abhilash O Usharraj, Biswapriya B Misra, Gincy P Thottathil, Kandakumar Jayasekaran, Yun Feng, Shaobin Hou, Su Yean Ong, Fui Ling Ng, Ling Sze Lee, Hock Siew Tan, Muhd Khairul Luqman Muhd Sakaff, Beng Soon Teh, Bee Khoo, Siti Suriawati Badai, Nurohaida Ab Aziz, Anton Yuryev, Bjarne Knudsen, Alexandre Dionne-Laporte, Nokuthula P Mchunu, Qingyi Yu, Brennick J Langston, Tracey Allen K Freitas, Aaron G Young, Rui Chen, Lei Wang, Nazalan Najimudin, Jennifer A Saito, Maqsudul Alam BMC Genomics 2013, 14:75 (2 February 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The draft genome of the rubber tree Hevea brasiliensis is almost 80% repetitive DNA with 12.7% of genes models identified being unique to this species, including key rubber biosynthesis and disease resistance genes
	28. 1036 Accesses	Research article Mitochondrial genomes and Doubly Uniparental Inheritance: new insights from Musculista senhousia sex-linked mitochondrial DNAs (Bivalvia Mytilidae) Marco Passamonti, Andrea Ricci, Liliana Milani, Fabrizio Ghiselli BMC Genomics 2011, 12:442 (6 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	29. 1024 Accesses	Research article A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits Harsh Raman, Rosy Raman, Andrzej Kilian, Frank Detering, Yan Long, David Edwards, Isobel AP Parkin, Andrew G Sharpe, Matthew N Nelson, Nick Larkan, Jun Zou, Jinling Meng, M Naveed Aslam, Jacqueline Batley, Wallace A Cowling, Derek Lydiate BMC Genomics 2013, 14:277 (23 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	30. 1011 Accesses	Research article Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing Robert Pinard, Alex de Winter, Gary J Sarkis, Mark B Gerstein, Karrie R Tartaro, Ramona N Plant, Michael Egholm, Jonathan M Rothberg, John H Leamon BMC Genomics 2006, 7:216 (23 August 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology
	31. 1007 Accesses	Research article Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing Sebastiaan van Heesch, Wigard P Kloosterman, Nico Lansu, Frans-Paul Ruzius, Elizabeth Levandowsky, Clarence C Lee, Shiguo Zhou, Steve Goldstein, David C Schwartz, Timothy T Harkins, Victor Guryev, Edwin Cuppen BMC Genomics 2013, 14:257 (16 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	32. 1004 Accesses	Reviewer acknowledgement Reviewer Acknowledgement 2012 Catherine M Rice BMC Genomics 2013, 14:231 (2 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	33. 952 Accesses	Research article Dynamic recruitment of microRNAs to their mRNA targets in the regenerating liver Jonathan Schug, Lindsay B McKenna, Gabriel Walton, Nicholas Hand, Sarmistha Mukherjee, Kow Essuman, Zhongjie Shi, Yan Gao, Karen Markley, Momo Nakagawa, Vasumathi Kameswaran, Anastassios Vourekas, Joshua R Friedman, Klaus H Kaestner, Linda E Greenbaum BMC Genomics 2013, 14:264 (18 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	34. 942 Accesses	Research article Alterations in gene expression in Caenorhabditis elegans associated with organophosphate pesticide intoxication and recovery John A Lewis, Elizabeth A Gehman, Christine E Baer, David A Jackson BMC Genomics 2013, 14:291 (30 April 2013) Abstract \| Provisional PDF \| PubMed
	35. 928 Accesses	Research article Origins of amyloid-beta William G Tharp, Indra Neil Sarkar BMC Genomics 2013, 14:290 (30 April 2013) Abstract \| Provisional PDF \| PubMed
	36. 911 Accesses	Research article Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing Michaela Novodvorska, Kimran Hayer, Steven T Pullan, Raymond Wilson, Martin J Blythe, Hein Stam, Malcolm Stratford, David B Archer BMC Genomics 2013, 14:246 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	37. 898 Accesses	Research article Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence Chris M Rands, Aaron Darling, Matthew Fujita, Lesheng Kong, Matthew T Webster, Céline Clabaut, Richard D Emes, Andreas Heger, Stephen Meader, Michael Brent Hawkins, Michael B Eisen, Clotilde Teiling, Jason Affourtit, Benjamin Boese, Peter R Grant, Barbara Rosemary Grant, Jonathan A Eisen, Arhat Abzhanov, Chris P Ponting BMC Genomics 2013, 14:95 (12 February 2013) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology \| Editor’s summary 204 years after Charles Darwin’s birth, sequencing of the genome of the Darwin’s Finch Geospiza magnirostris reveals over 13,000 predicted genes, of which two under positive selection may have contributed to beak morphology evolution, which so interested Darwin.
	38. 897 Accesses	Research article Characterization of differential transcript abundance through time during Nematostella vectensis development Rebecca Rae Helm, Stefan Siebert, Sarah Tulin, Joel Smith, Casey William Dunn BMC Genomics 2013, 14:266 (19 April 2013) Abstract \| Provisional PDF \| PubMed
	39. 898 Accesses	Research article Genome-wide promoter methylation profile of human testis and epididymis: identified from cell-free seminal DNA Chunlin Wu, Xiaofang Ding, Honggang Li, Changhong Zhu, Chengliang Xiong BMC Genomics 2013, 14:288 (28 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	40. 870 Accesses	Research article Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny Shi-Hui Niu, Zhe-Xin Li, Hu-Wei Yuan, Xiao-Yang Chen, Yue Li, Wei Li BMC Genomics 2013, 14:263 (18 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	41. 854 Accesses	Research article Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish Liandong Yang, Ming Zou, Beide Fu, Shunping He BMC Genomics 2013, 14:65 (31 January 2013) Abstract \| Full text \| PDF \| PubMed
	42. 853 Accesses	Research article 5′ tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction Joseph M Dhahbi, Stephen R Spindler, Hani Atamna, Amy Yamakawa, Dario Boffelli, Patricia Mote, David IK Martin BMC Genomics 2013, 14:298 (2 May 2013) Abstract \| Full text \| PDF \| PubMed
	43. 852 Accesses	Research article Transcriptome analysis of Cymbidium sinense and its application to the identification of genes associated with floral development Jianxia Zhang, Kunlin Wu, Songjun Zeng, Jaime A Teixeira da Silva, Xiaolan Zhao, Chang-En Tian, Haoqiang Xia, Jun Duan BMC Genomics 2013, 14:279 (24 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	44. 849 Accesses	Research article Sex-biased gene expression in the brown alga Fucus vesiculosus Maria João F Martins, Catarina F Mota, Gareth A Pearson BMC Genomics 2013, 14:294 (1 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	45. 847 Accesses	Research article The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen's lifestyle Anthony Zoropogui, Petar Pujic, Philippe Normand, Valérie Barbe, Patrick Belli, Arnault Graindorge, David Roche, David Vallenet, Sophie Mangenot, Patrick Boiron, Véronica Rodriguez-Nava, Sebastien Ribun, Yves Richard, Benoit Cournoyer, Didier Blaha BMC Genomics 2013, 14:286 (27 April 2013) Abstract \| Provisional PDF \| PubMed
	46. 843 Accesses	Research article RAD tag sequencing as a source of SNP markers in Cynara cardunculus L Davide Scaglione, Alberto Acquadro, Ezio Portis, Matteo Tirone, Steven J Knapp, Sergio Lanteri BMC Genomics 2012, 13:3 (3 January 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	47. 843 Accesses	Research article Gene expression patterns following unilateral traumatic brain injury reveals a local pro-inflammatory and remote anti-inflammatory response Todd E White, Gregory D Ford, Monique C Surles-Zeigler, Alicia S Gates, Michelle C LaPlaca, Byron D Ford BMC Genomics 2013, 14:282 (25 April 2013) Abstract \| Provisional PDF \| PubMed
	48. 842 Accesses	Methodology article Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs Alexis Christoforides, John D Carpten, Glen J Weiss, Michael J Demeure, Daniel D Von Hoff, David W Craig BMC Genomics 2013, 14:302 (4 May 2013) Abstract \| Provisional PDF \| PubMed
	49. 841 Accesses	Research article Functional genomic analysis of bile salt resistance in Enterococcus faecium Xinglin Zhang, Damien Bierschenk, Janetta Top, Iacovos Anastasiou, Marc JM Bonten, Rob JL Willems, Willem van Schaik BMC Genomics 2013, 14:299 (3 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	50. 837 Accesses	Research article Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence Benoît Remenant, Bénédicte Coupat-Goutaland, Alice Guidot, Gilles Cellier, Emmanuel Wicker, Caitilyn Allen, Mark Fegan, Olivier Pruvost, Mounira Elbaz, Alexandra Calteau, Gregory Salvignol, Damien Mornico, Sophie Mangenot, Valérie Barbe, Claudine Médigue, Philippe Prior BMC Genomics 2010, 11:379 (15 June 2010) Abstract \| Full text \| PDF \| PubMed
	51. 831 Accesses	Research article How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes? Brian J Haas, Melissa Chin, Chad Nusbaum, Bruce W Birren, Jonathan Livny BMC Genomics 2012, 13:734 (27 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology
	52. 829 Accesses	Research article Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation Feng Xu, Qian Liu, Luying Chen, Jiebin Kuang, Thomas Walk, Jinxiang Wang, Hong Liao BMC Genomics 2013, 14:66 (31 January 2013) Abstract \| Provisional PDF \| PubMed
	53. 828 Accesses	Research article Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea Zahra-Katy Navabi, Terry Huebert, Andrew G Sharpe, Carmel M O¿Neill, Ian Bancroft, Isobel AP Parkin BMC Genomics 2013, 14:250 (15 April 2013) Abstract \| Provisional PDF \| PubMed
	54. 819 Accesses	Research article Changes in the transcriptome of the malaria parasite Plasmodium falciparum during the initial phase of transmission from the human to the mosquito Che Julius Ngwa, Matthias Scheuermayer, Gunnar Rudolf Mair, Selina Kern, Thomas Brügl, Christine Clara Wirth, Makoah Nigel Aminake, Jochen Wiesner, Rainer Fischer, Andreas Vilcinskas, Gabriele Pradel BMC Genomics 2013, 14:256 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	55. 825 Accesses	Research article Transcriptome analysis of the Cryptocaryon irritans tomont stage identifies potential genes for the detection and control of cryptocaryonosis Yogeswaran Lokanathan, Adura Mohd-Adnan, Kiew-Lian Wan, Sheila Nathan BMC Genomics 2010, 11:76 (29 January 2010) Abstract \| Full text \| PDF \| PubMed
	56. 822 Accesses	Research article Subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances Ariel Fernández, Yun-Huei Tzeng, Sze-Bi Hsu BMC Genomics 2011, 12:604 (14 December 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment
	57. 800 Accesses	Research article miR-296-3p, miR-298-5p and their downstream networks are causally involved in the higher resistance of mammalian pancreatic α cells to cytokine-induced apoptosis as compared to β cells Davide Barbagallo, Salvatore Piro, Angelo G Condorelli, Loriana G Mascali, Francesca Urbano, Nunziatina Parrinello, Adelina Monello, Luisa Statello, Marco Ragusa, Agata M Rabuazzo, Cinzia Di Pietro, Francesco Purrello, Michele Purrello BMC Genomics 2013, 14:62 (29 January 2013) Abstract \| Full text \| PDF \| PubMed
	58. 800 Accesses	Research article Global remodeling of nucleosome positions in C. elegans George Locke, Devorah Haberman, Steven M Johnson, Alexandre V Morozov BMC Genomics 2013, 14:284 (26 April 2013) Abstract \| Provisional PDF \| PubMed
	59. 790 Accesses	Research article A roadmap of cell-type specific gene expression during sequential stages of the arbuscular mycorrhiza symbiosis Claudia Hogekamp, Helge Küster BMC Genomics 2013, 14:306 (7 May 2013) Abstract \| Provisional PDF \| PubMed
	60. 785 Accesses	Software P2RP: a web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes Mohamed Barakat, Philippe Ortet, David E Whitworth BMC Genomics 2013, 14:269 (20 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	61. 784 Accesses	Methodology article Transcriptome screen for fast evolving genes by Inter-Specific Selective Hybridization (ISSH) Juan I Montoya-Burgos, Aurélia Foulon, Ilham Bahechar BMC Genomics 2010, 11:126 (22 February 2010) Abstract \| Full text \| PDF \| PubMed
	62. 784 Accesses	Research New methods for separating causes from effects in genomics data Alexander Statnikov, Mikael Henaff, Nikita I Lytkin, Constantin F Aliferis BMC Genomics 2012, 13(Suppl 8):S22 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	63. 777 Accesses	Research article A microsatellite-based linkage map of salt tolerant tilapia (Oreochromis mossambicus x Oreochromis spp.) and mapping of sex-determining loci Feng Liu, Fei Sun, Jian Li, Jun Hong Xia, Grace Lin, Rong Jian Tu, Gen Hua Yue BMC Genomics 2013, 14:58 (28 January 2013) Abstract \| Full text \| PDF \| PubMed
	64. 767 Accesses	Research article Low-pass sequencing for microbial comparative genomics Young Ah Goo, Jared Roach, Gustavo Glusman, Nitin S Baliga, Kerry Deutsch, Min Pan, Sean Kennedy, Shiladitya DasSarma, Wailap Victor Ng, Leroy Hood BMC Genomics 2004, 5:3 (12 January 2004) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Low-pass shotgun sequencing of four extreme halophiles yields surprisingly useful information, including a family tree, when it is compared with the completed sequence of another Halobacterium.
	65. 762 Accesses	Research article High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L Régine Delourme, Cyril Falentin, Berline Fomeju, Marie Boillot, Gilles Lassalle, Isabelle André, Jorge Duarte, Valérie Gauthier, Nicole Lucante, Amandine Marty, Maryline Pauchon, Jean-Philippe Pichon, Nicolas Ribière, Gwenn Trotoux, Philippe Blanchard, Nathalie Rivière, Jean-Pierre Martinant, Jérôme Pauquet BMC Genomics 2013, 14:120 (22 February 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	66. 762 Accesses	Research article Comparing de novo assemblers for 454 transcriptome data Sujai Kumar, Mark L Blaxter BMC Genomics 2010, 11:571 (16 October 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment
	67. 760 Accesses	Research article Transcriptional analysis of the three Nlrp1 paralogs in mice Inka Sastalla, Devorah Crown, Seth L Masters, Andrew McKenzie, Stephen H Leppla, Mahtab Moayeri BMC Genomics 2013, 14:188 (18 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	68. 758 Accesses	Research article Study of whole genome linkage disequilibrium in Nellore cattle Rafael Espigolan, Fernando Baldi, Arione A Boligon, Fabio RP Souza, Daniel GM Gordo, Rafael L Tonussi, Diércles F Cardoso, Henrique N Oliveira, Humberto Tonhati, Mehdi Sargolzaei, Flavio S Schenkel, Roberto Carvalheiro, Jesus A Ferro, Lucia G Albuquerque BMC Genomics 2013, 14:305 (5 May 2013) Abstract \| Provisional PDF \| PubMed
	69. 755 Accesses	Methodology article Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics Martin Danzer, Norbert Niklas, Stephanie Stabentheiner, Katja Hofer, Johannes Pröll, Christina Stückler, Edeltraud Raml, Helene Polin, Christian Gabriel BMC Genomics 2013, 14:221 (4 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	70. 753 Accesses	Research article A multistep genomic screen identifies new genes required for repair of DNA double-strand breaks in Saccharomyces cerevisiae Jennifer Summers McKinney, Sunaina Sethi, Jennifer DeMars Tripp, Thuy N Nguyen, Brian A Sanderson, James W Westmoreland, Michael A Resnick, L Kevin Lewis BMC Genomics 2013, 14:251 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	71. 754 Accesses	Research article Unscrambling butterfly oogenesis Jean-Michel Carter, Simon C Baker, Ryan Pink, David RF Carter, Aiden Collins, Jeremie Tomlin, Melanie Gibbs, Casper J Breuker BMC Genomics 2013, 14:283 (26 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	72. 740 Accesses	Research article Pig immune response to general stimulus and to porcine reproductive and respiratory syndrome virus infection: a meta-analysis approach Bouabid Badaoui, Christopher K Tuggle, Zhiliang Hu, James M Reecy, Tahar Ait-Ali, Anna Anselmo, Sara Botti BMC Genomics 2013, 14:220 (3 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	73. 738 Accesses	Research article Short and long-term genome stability analysis of prokaryotic genomes Matteo Brilli, Pietro Liò, Vincent Lacroix, Marie-France Sagot BMC Genomics 2013, 14:309 (8 May 2013) Abstract \| Provisional PDF \| PubMed
	74. 725 Accesses	Research article Prediction and identification of natural antisense transcripts and their small RNAs in soybean (Glycine max) Hu Zheng, Jiang Qiyan, Ni Zhiyong, Zhang Hui BMC Genomics 2013, 14:280 (24 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	75. 725 Accesses	Research article Functional transcriptomic analysis of the role of MAB-5/Hox in Q neuroblast migration in Caenorhabditis elegans Joel V Tamayo, Mahekta Gujar, Stuart J Macdonald, Erik A Lundquist BMC Genomics 2013, 14:304 (4 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	76. 716 Accesses	Database The RAST Server: Rapid Annotations using Subsystems Technology Ramy K Aziz, Daniela Bartels, Aaron A Best, Matthew DeJongh, Terrence Disz, Robert A Edwards, Kevin Formsma, Svetlana Gerdes, Elizabeth M Glass, Michael Kubal, Folker Meyer, Gary J Olsen, Robert Olson, Andrei L Osterman, Ross A Overbeek, Leslie K McNeil, Daniel Paarmann, Tobias Paczian, Bruce Parrello, Gordon D Pusch, Claudia Reich, Rick Stevens, Olga Vassieva, Veronika Vonstein, Andreas Wilke, Olga Zagnitko BMC Genomics 2008, 9:75 (8 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology
	77. 713 Accesses	Methodology article Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting Jamie K Teer, Jennifer J Johnston, Sarah L Anzick, Marbin Pineda, Gary Stone, NISC Comparative Sequencing Program1, Paul S Meltzer, James C Mullikin, Leslie G Biesecker BMC Genomics 2013, 14:253 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	78. 720 Accesses	Research article Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae Vidhyavathi Raman, Stacey A Simon, Amanda Romag, Feray Demirci, Sandra M Mathioni, Jixian Zhai, Blake C Meyers, Nicole M Donofrio BMC Genomics 2013, 14:326 (12 May 2013) Abstract \| Provisional PDF \| PubMed
	79. 702 Accesses	Methodology article Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes Samuel O Oyola, Thomas D Otto, Yong Gu, Gareth Maslen, Magnus Manske, Susana Campino, Daniel J Turner, Bronwyn MacInnis, Dominic P Kwiatkowski, Harold P Swerdlow, Michael A Quail BMC Genomics 2012, 13:1 (3 January 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	80. 699 Accesses	Research article Venom gland transcriptomes of two elapid snakes (Bungarus multicinctus and Naja atra) and evolution of toxin genes Yu Jiang, Yan Li, Wenhui Lee, Xun Xu, Yue Zhang, Ruoping Zhao, Yun Zhang, Wen Wang BMC Genomics 2011, 12:1 (3 January 2011) Abstract \| Full text \| PDF \| PubMed
	81. 698 Accesses	Research article Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing Anis Djari, Diane Esquerré, Bernard Weiss, Frédéric Martins, Cédric Meersseman, Mekki Boussaha, Christophe Klopp, Dominique Rocha BMC Genomics 2013, 14:307 (7 May 2013) Abstract \| Provisional PDF \| PubMed
	82. 691 Accesses	Research article High natural gene expression variation in the reef-building coral Acropora millepora: potential for acclimative and adaptive plasticity Camila Granados-Cifuentes, Anthony J Bellantuono, Tyrone Ridgway, Ove Hoegh-Guldberg, Mauricio Rodriguez-Lanetty BMC Genomics 2013, 14:228 (8 April 2013) Abstract \| Full text \| PDF \| PubMed
	83. 689 Accesses	Research article Six novel Y chromosome genes in Anopheles mosquitoes discovered by independently sequencing males and females Andrew Brantley Hall, Yumin Qi, Vladimir Timoshevskiy, Maria V Sharakhova, Igor V Sharakhov, Zhijian Tu BMC Genomics 2013, 14:273 (23 April 2013) Abstract \| Provisional PDF \| PubMed
	84. 685 Accesses	Research article Comparative gene expression between two yeast species Yuanfang Guan, Maitreya J Dunham, Olga G Troyanskaya, Amy A Caudy BMC Genomics 2013, 14:33 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	85. 679 Accesses	Research article RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome Yvan Wenger, Brigitte Galliot BMC Genomics 2013, 14:204 (25 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
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	87. 678 Accesses	Research article Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter Bridget M Barker, Kristin Kroll, Martin Vödisch, Aurélien Mazurie, Olaf Kniemeyer, Robert A Cramer BMC Genomics 2012, 13:62 (6 February 2012) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology
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	89. 668 Accesses	Research article Housekeeping and tissue-specific genes in mouse tissues Kouame E Kouadjo, Yuichiro Nishida, Jean F Cadrin-Girard, Mayumi Yoshioka, Jonny St-Amand BMC Genomics 2007, 8:127 (22 May 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	90. 659 Accesses	Research article A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover Istvan Nagy, Susanne Barth, Jeanne Mehenni-Ciz, Michael T Abberton, Dan Milbourne BMC Genomics 2013, 14:100 (13 February 2013) Abstract \| Provisional PDF \| PubMed
	91. 664 Accesses	Methodology article Optimizing de novo assembly of short-read RNA-seq data for phylogenomics Ya Yang, Stephen A Smith BMC Genomics 2013, 14:328 (14 May 2013) Abstract \| Provisional PDF \| PubMed
	92. 657 Accesses	Research article RNA-seq and microarray complement each other in transcriptome profiling Sunitha Kogenaru, Qing Yan, Yinping Guo, Nian Wang BMC Genomics 2012, 13:629 (15 November 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	93. 650 Accesses	Research article Transcriptome-wide comparison of sequence variation in divergent ecotypes of kokanee salmon Matthew A Lemay, David J Donnelly, Michael A Russello BMC Genomics 2013, 14:308 (7 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	94. 646 Accesses	Research article Transcriptome-based discovery of pathways and genes related to resistance against Fusarium head blight in wheat landrace Wangshuibai Jin Xiao, Xiahong Jin, Xinping Jia, Haiyan Wang, Aizhong Cao, Weiping Zhao, Haiyan Pei, Zhaokun Xue, Liqiang He, Qiguang Chen, Xiue Wang BMC Genomics 2013, 14:197 (21 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
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	98. 613 Accesses	Research article Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage Isabelle Rosinski-Chupin, Elisabeth Sauvage, Barbara Mairey, Sophie Mangenot, Laurence Ma, Violette Da Cunha, Christophe Rusniok, Christiane Bouchier, Valérie Barbe, Philippe Glaser BMC Genomics 2013, 14:252 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	99. 609 Accesses	Research article Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications Jorge Valdés, Inti Pedroso, Raquel Quatrini, Robert J Dodson, Herve Tettelin, Robert Blake, Jonathan A Eisen, David S Holmes BMC Genomics 2008, 9:597 (11 December 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Sequence, annotation and bioinformatic analysis extends understanding of the metabolic pathways of the bacterium Acidithiobacillus ferrooxidans including those used during the industrial recovery of copper by bioleaching.
	100. 603 Accesses	Methodology article A carrier-assisted ChIP-seq method for estrogen receptor-chromatin interactions from breast cancer core needle biopsy samples Wilbert Zwart, Rutger Koornstra, Jelle Wesseling, Emiel Rutgers, Sabine Linn, Jason S Carroll BMC Genomics 2013, 14:232 (8 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed