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	1. 1662 Accesses	Research article A neutral theory of genome evolution and the frequency distribution of genes Bart Haegeman, Joshua S Weitz BMC Genomics 2012, 13:196 (21 May 2012) Abstract \| Provisional PDF \| PubMed
	2. 1034 Accesses	Methodology article Improving ancient DNA read mapping against modern reference genomes Mikkel Schubert, Aurelien Ginolhac, Stinus Lindgreen, John F Thompson, Khaked AS Al-Rasheid, Eske Willerslev, Anders Krogh, Ludovic Orlando BMC Genomics 2012, 13:178 (10 May 2012) Abstract \| Provisional PDF \| PubMed
	3. 1004 Accesses	Software Comparing thousands of circular genomes using the CGView Comparison Tool Jason R Grant, Adriano S Arantes, Paul Stothard BMC Genomics 2012, 13:202 (23 May 2012) Abstract \| Provisional PDF \| PubMed
	4. 989 Accesses	Research article Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes Patricia C Dos Santos, Zhong Fang, Steven W Mason, João C Setubal, Ray Dixon BMC Genomics 2012, 13:162 (3 May 2012) Abstract \| Provisional PDF \| PubMed
	5. 846 Accesses	Research article Phylogenomic analysis of UDP glycosyltransferase 1 multigene family in Linum usitatissimum identified genes with varied expression patterns Vitthal T Barvkar, Varsha C Pardeshi, Sandip M Kale, Narendra Y Kadoo, Vidya S Gupta BMC Genomics 2012, 13:175 (8 May 2012) Abstract \| Provisional PDF \| PubMed
	6. 797 Accesses	Research article Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants Yijun Meng, Chaogang Shao, Huizhong Wang, Yongfeng Jin BMC Genomics 2012, 13:197 (21 May 2012) Abstract \| Provisional PDF \| PubMed
	7. 791 Accesses	Research article Genome organization and characteristics of soybean microRNAs Marie Turner, Oliver Yu, Senthil Subramanian BMC Genomics 2012, 13:169 (4 May 2012) Abstract \| Provisional PDF \| PubMed
	8. 786 Accesses	Research article Characterization of host microRNAs that respond to DNA virus infection in a crustacean Tianzhi Huang, Dandan Xu, Xiaobo Zhang BMC Genomics 2012, 13:159 (30 April 2012) Abstract \| Provisional PDF \| PubMed
	9. 770 Accesses	Methodology article Exome sequencing generates high quality data in non-target regions Yan Guo, Jirong Long, Jing He, Chung-I Li, Qiuyin Cai, Xiao-Ou Shu, Wei Zheng, Chun Li BMC Genomics 2012, 13:194 (20 May 2012) Abstract \| Provisional PDF \| PubMed
	10. 751 Accesses	Research article Large-scale transcriptome sequencing and gene analyses in the crab-eating macaque (macaca fascicularis) for biomedical research Jae-Won Huh, Young-Hyun Kim, Sang-Je Park, Dae-Soo Kim, Sang-Rae Lee, Kyoung-Min Kim, Kang-Jin Jeong, Ji-Su Kim, Bong-Seok Song, Bo-Woong Sim, Sun-Uk Kim, Sang-Hyun Kim, Kyu-Tae Chang BMC Genomics 2012, 13:163 (4 May 2012) Abstract \| Provisional PDF \| PubMed
	11. 737 Accesses	Research article De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.) Dejun Li, Zhi Deng, Bi Qin, Xianghong Liu, Zhonghua Men BMC Genomics 2012, 13:192 (18 May 2012) Abstract \| Provisional PDF \| PubMed
	12. 727 Accesses	Methodology article Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes Samuel O Oyola, Thomas D Otto, Yong Gu, Gareth Maslen, Magnus Manske, Susana Campino, Daniel J Turner, Bronwyn MacInnis, Dominic P Kwiatkowski, Harold P Swerdlow, Michael A Quail BMC Genomics 2012, 13:1 (3 January 2012) Abstract \| Full text \| PDF \| PubMed
	13. 717 Accesses	Research article Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans Qi Zhou, Hong-mei Zhu, Quan-fei Huang, Li Zhao, Guo-jie Zhang, Scott W Roy, Beatriz Vicoso, Zhao-lin Xuan, Jue Ruan, Yue Zhang, Ruo-ping Zhao, Chen Ye, Xiu-qing Zhang, Jun Wang, Wen Wang, Doris Bachtrog BMC Genomics 2012, 13:109 (22 March 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Analysis of the genome of Drosophila albomicans, shows the extremely young neo-sex chromosomes already have an accumulation of excess deleterious mutations and the B chromosomes have an origin in sex chromosome-autosome fusion.
	14. 693 Accesses	Research article Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications Jorge Valdés, Inti Pedroso, Raquel Quatrini, Robert J Dodson, Herve Tettelin, Robert Blake, Jonathan A Eisen, David S Holmes BMC Genomics 2008, 9:597 (11 December 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Sequence, annotation and bioinformatic analysis extends understanding of the metabolic pathways of the bacterium Acidithiobacillus ferrooxidans including those used during the industrial recovery of copper by bioleaching.
	15. 690 Accesses	Research article Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features Chih-yu Chen, Quaid Morris, Jennifer A Mitchell BMC Genomics 2012, 13:152 (26 April 2012) Abstract \| Provisional PDF \| PubMed
	16. 688 Accesses	Methodology article GeSICA: Genome segmentation from intrachromosomal associations Lin Liu, Yiqian Zhang, Jianxing Feng, Ning Zheng, Junfeng Yin, Yong Zhang BMC Genomics 2012, 13:164 (4 May 2012) Abstract \| Provisional PDF \| PubMed
	17. 685 Accesses	Research article A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy Kankshita Swaminathan, Won Chae, Therese Mitros, Kranthi Varala, Liang Xie, Adam Barling, Katarzyna Glowacka, Megan Hall, Stanislaw Jezowski, Ray Ming, Matthew Hudson, John A Juvik, Daniel S Rokhsar, Stephen P Moose BMC Genomics 2012, 13:142 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
	18. 679 Accesses	Research article Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation Tim Kahlke, Alexander Goesmann, Erik Hjerde, Nils Peder Willassen, Peik Haugen BMC Genomics 2012, 13:179 (10 May 2012) Abstract \| Provisional PDF \| PubMed
	19. 677 Accesses	Research article Genomic variation in Salmonella enterica core genes for epidemiological typing Pimlapas Leekitcharoenphon, Oksana Lukjancenko, Carsten Friis, Frank M Aarestrup, David W Ussery BMC Genomics 2012, 13:88 (12 March 2012) Abstract \| Full text \| PDF \| PubMed
	20. 667 Accesses	Methodology article Improving the performance of True Single Molecule Sequencing for ancient DNA Aurelien Ginolhac, Julia Vilstrup, Jesper Stenderup, Morten Rasmussen, Mathias Stiller, Beth Shapiro, Grant Zazula, Duane Froese, Kathleen E Steinmann, John F Thompson, Khaled AS AL-Rasheid, Thomas MP Gilbert, Eske Willerslev, Ludovic Orlando BMC Genomics 2012, 13:177 (10 May 2012) Abstract \| Provisional PDF \| PubMed
	21. 653 Accesses	Research article Characterization of the transcriptome profiles related to globin gene switching during in vitro erythroid maturation Biaoru Li, Lianghao Ding, Wei Li, Michael D Story, Betty S Pace BMC Genomics 2012, 13:153 (26 April 2012) Abstract \| Full text \| PDF \| PubMed
	22. 647 Accesses	Research article Fast skeletal muscle transcriptome of the Gilthead sea bream (Sparus aurata) determined by next generation sequencing Daniel Garcia de la serrana Castillo, Alicia Estevez, Karl Andree, Ian A Johnston BMC Genomics 2012, 13:181 (11 May 2012) Abstract \| Provisional PDF \| PubMed
	23. 641 Accesses	Research article De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode De-Lin Xu, Hail Long, Jun-Jun Liang, Jie Zhang, Xin Chen, Jing-Liang Li, Zhi-Fen Pan, Guang-Bing Deng, Mao-Qun Yu BMC Genomics 2012, 13:133 (11 April 2012) Abstract \| Provisional PDF \| PubMed
	24. 638 Accesses	Research article The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction Gina A Garzón-Martínez, Iris Zhu, David Landsman, Luz S Barrero, Leonardo Marino-Ramirez BMC Genomics 2012, 13:151 (25 April 2012) Abstract \| Provisional PDF \| PubMed
	25. 631 Accesses	Research article Whole-Genome sequencing and genetic variant analysis of a quarter Horse mare Ryan Doan, Noah D Cohen, Jason Sawyer, Noushin Ghaffari, Charles D Johnson, Scott V Dindot BMC Genomics 2012, 13:78 (17 February 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Whole genome sequencing of the American Quarter Horse breed has revealed genetic differences from the Thoroughbred horse in genes linked to traits responsible for its renowned fast and nimble performance, and with characteristic diseases.