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	1. 6417 Accesses	Research article A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers Michael A Quail, Miriam Smith, Paul Coupland, Thomas D Otto, Simon R Harris, Thomas R Connor, Anna Bertoni, Harold P Swerdlow, Yong Gu BMC Genomics 2012, 13:341 (24 July 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Sequencing of four microbial genomes with widely differing GC content is compared on performance using three major new platforms: Ion Torrent PGM, Pacific Biosciences RS, and illumina MiSeq versus Illumina HiSeq system.
	2. 3986 Accesses	Research article Draft genome sequence of the rubber tree Hevea brasiliensis Ahmad Yamin Abdul Rahman, Abhilash O Usharraj, Biswapriya B Misra, Gincy P Thottathil, Kandakumar Jayasekaran, Yun Feng, Shaobin Hou, Su Yean Ong, Fui Ling Ng, Ling Sze Lee, Hock Siew Tan, Muhd Khairul Luqman Muhd Sakaff, Beng Soon Teh, Bee Khoo, Siti Suriawati Badai, Nurohaida Ab Aziz, Anton Yuryev, Bjarne Knudsen, Alexandre Dionne-Laporte, Nokuthula P Mchunu, Qingyi Yu, Brennick J Langston, Tracey Allen K Freitas, Aaron G Young, Rui Chen, Lei Wang, Nazalan Najimudin, Jennifer A Saito, Maqsudul Alam BMC Genomics 2013, 14:75 (2 February 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The draft genome of the rubber tree Hevea brasiliensis is almost 80% repetitive DNA with 12.7% of genes models identified being unique to this species, including key rubber biosynthesis and disease resistance genes
	3. 3417 Accesses	Research article Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence Chris M Rands, Aaron Darling, Matthew Fujita, Lesheng Kong, Matthew T Webster, Céline Clabaut, Richard D Emes, Andreas Heger, Stephen Meader, Michael Brent Hawkins, Michael B Eisen, Clotilde Teiling, Jason Affourtit, Benjamin Boese, Peter R Grant, Barbara Rosemary Grant, Jonathan A Eisen, Arhat Abzhanov, Chris P Ponting BMC Genomics 2013, 14:95 (12 February 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary 204 years after Charles Darwin’s birth, sequencing of the genome of the Darwin’s Finch Geospiza magnirostris reveals over 13,000 predicted genes, of which two under positive selection may have contributed to beak morphology evolution, which so interested Darwin.
	4. 2568 Accesses	Research article Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish Liandong Yang, Ming Zou, Beide Fu, Shunping He BMC Genomics 2013, 14:65 (31 January 2013) Abstract \| Provisional PDF \| PubMed
	5. 2537 Accesses	Methodology article Genotyping 1000 yeast strains by next-generation sequencing Stefan Wilkening, Manu M Tekkedil, Gen Lin, Emilie S Fritsch, Wu Wei, Julien Gagneur, David W Lazinski, Andrew Camilli, Lars M Steinmetz BMC Genomics 2013, 14:90 (9 February 2013) Abstract \| Full text \| PDF \| PubMed
	6. 2142 Accesses	Research article Comparative genomic analyses of Mycoplasma hyopneumoniae pathogenic 168 strain and its high-passaged attenuated strain Wei Liu, Shaobo Xiao, Mao Li, Shaohua Guo, Sha Li, Rui Luo, Zhixin Feng, Bin Li, Zhemin Zhou, Guoqing Shao, Huanchun Chen, Liurong Fang BMC Genomics 2013, 14:80 (5 February 2013) Abstract \| Provisional PDF \| PubMed
	7. 2124 Accesses	Research article An R2R3 MYB transcription factor determines red petal colour in an Actinidia (kiwifruit) hybrid population Lena G Fraser, Alan G Seal, Mirco Montefiori, Tony K McGhie, Gianna K Tsang, Paul M Datson, Elena Hilario, Hinga E Marsh, Juanita K Dunn, Roger P Hellens, Kevin M Davies, Mark A McNeilage, H Nihal Silva, Andrew C Allan BMC Genomics 2013, 14:28 (16 January 2013) Abstract \| Provisional PDF \| PubMed
	8. 2056 Accesses	Research article Transcriptome analysis of rice root heterosis by RNA-Seq Rongrong Zhai, Yue Feng, Huimin Wang, Xiaodeng Zhan, Xihong Shen, Weiming Wu, Yingxin Zhang, Daibo Chen, Gaoxing Dai, Zhanlie Yang, Liyong Cao, Shihua Cheng BMC Genomics 2013, 14:19 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	9. 1931 Accesses	Research article Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles Riccardo Aiese Cigliano, Walter Sanseverino, Gaetana Cremona, Maria R Ercolano, Clara Conicella, Federica M Consiglio BMC Genomics 2013, 14:57 (28 January 2013) Abstract \| Full text \| PDF \| PubMed
	10. 1815 Accesses	Research article Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters Paul Gagniuc, Constantin Ionescu-Tirgoviste BMC Genomics 2012, 13:512 (28 September 2012) Abstract \| Full text \| PDF \| PubMed
	11. 1814 Accesses	Research article LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana Michaela Hundertmark, Dirk K Hincha BMC Genomics 2008, 9:118 (4 March 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	12. 1791 Accesses	Research article Comparison of metagenomic samples using sequence signatures Bai Jiang, Kai Song, Jie Ren, Minghua Deng, Fengzhu Sun, Xuegong Zhang BMC Genomics 2012, 13:730 (27 December 2012) Abstract \| Full text \| PDF \| PubMed
	13. 1690 Accesses	Research article Transcriptome of the dead: characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammal Joseph I Hoffman, Michael AS Thorne, Philip N Trathan, Jaume Forcada BMC Genomics 2013, 14:52 (24 January 2013) Abstract \| Full text \| PDF \| PubMed
	14. 1669 Accesses	Research article Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction Miguel Redondo-Nieto, Matthieu Barret, John Morrissey, Kieran Germaine, Francisco Martínez-Granero, Emma Barahona, Ana Navazo, María Sánchez-Contreras, Jennifer A Moynihan, Candela Muriel, David Dowling, Fergal O’Gara, Marta Martín, Rafael Rivilla BMC Genomics 2013, 14:54 (25 January 2013) Abstract \| Full text \| PDF \| PubMed
	15. 1635 Accesses	Research article Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing Pablo Peláez, Minerva S Trejo, Luis P Iñiguez, Georgina Estrada-Navarrete, Alejandra A Covarrubias, José L Reyes, Federico Sanchez BMC Genomics 2012, 13:83 (6 March 2012) Abstract \| Full text \| PDF \| PubMed
	16. 1631 Accesses	Research article Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle Roy Kirsch, Natalie Wielsch, Heiko Vogel, Aleš Svatoš, David G Heckel, Yannick Pauchet BMC Genomics 2012, 13:587 (1 November 2012) Abstract \| Full text \| PDF \| PubMed
	17. 1633 Accesses	Research article Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna Zhen-hua Dang, Lin-lin Zheng, Jia Wang, Zhe Gao, Shu-biao Wu, Zhi Qi, Ying-chun Wang BMC Genomics 2013, 14:29 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	18. 1628 Accesses	Research article Small RNA pyrosequencing in the protozoan parasite Entamoeba histolytica reveals strain-specific small RNAs that target virulence genes Hanbang Zhang, Gretchen M Ehrenkaufer, Neil Hall, Upinder Singh BMC Genomics 2013, 14:53 (25 January 2013) Abstract \| Provisional PDF \| PubMed
	19. 1592 Accesses	Research article Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif Dale Godfrey, Henrik Böhlenius, Carsten Pedersen, Ziguo Zhang, Jeppe Emmersen, Hans Thordal-Christensen BMC Genomics 2010, 11:317 (20 May 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment
	20. 1579 Accesses	Research article Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana Roshan Shrestha, Benoit Tesson, Trina Norden-Krichmar, Stephen Federowicz, Mark Hildebrand, Andrew E Allen BMC Genomics 2012, 13:499 (20 September 2012) Abstract \| Full text \| PDF \| PubMed
	21. 1570 Accesses	Methodology article Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing Junwen Wang, Yudong Xia, Lili Li, Desheng Gong, Yu Yao, Huijuan Luo, Hanlin Lu, Na Yi, Honglong Wu, Xiuqing Zhang, Qian Tao, Fei Gao BMC Genomics 2013, 14:11 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	22. 1563 Accesses	Research article Analysis of the peroxisome proliferator-activated receptor-β/δ (PPARβ/δ) cistrome reveals novel co-regulatory role of ATF4 Combiz Khozoie, Michael G Borland, Bokai Zhu, Songjoon Baek, Sam John, Gordon L Hager, Yatrik M Shah, Frank J Gonzalez, Jeffrey M Peters BMC Genomics 2012, 13:665 (24 November 2012) Abstract \| Full text \| PDF \| PubMed
	23. 1538 Accesses	Research article Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018 Shiyuan Hu, Huajun Zheng, Yang Gu, Jingbo Zhao, Weiwen Zhang, Yunliu Yang, Shengyue Wang, Guoping Zhao, Sheng Yang, Weihong Jiang BMC Genomics 2011, 12:93 (2 February 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	24. 1526 Accesses	Research article De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicus Yijun Zhou, Fei Gao, Ran Liu, Jinchao Feng, Hongjie Li BMC Genomics 2012, 13:266 (21 June 2012) Abstract \| Full text \| PDF \| PubMed
	25. 1527 Accesses	Research article Centering, scaling, and transformations: improving the biological information content of metabolomics data Robert A van den Berg, Huub CJ Hoefsloot, Johan A Westerhuis, Age K Smilde, Mariët J van der Werf BMC Genomics 2006, 7:142 (8 June 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central