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	1. 9500 Accesses	Research article Gene expression analysis of Drosophilaa Manf mutants reveals perturbations in membrane traffic and major metabolic changes Mari Palgi, Dario Greco, Riitta Lindström, Petri Auvinen, Tapio I Heino BMC Genomics 2012, 13:134 (11 April 2012) Abstract \| Full text \| PDF \| PubMed
	2. 5809 Accesses	Research article The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild Javier Prado-Martinez, Irene Hernando-Herraez, Belen Lorente-Galdos, Marc Dabad, Oscar Ramirez, Carlos Baeza-Delgado, Carlos Morcillo-Suarez, Can Alkan, Fereydoun Hormozdiari, Emanuele Raineri, Jordi Estellé, Marcos Fernandez-Callejo, Mònica Valles, Lars Ritscher, Torsten Schöneberg, Elisa de la Calle-Mustienes, Sònia Casillas, Raquel Rubio-Acero, Marta Melé, Johannes Engelken, Mario Caceres, Jose Gomez-Skarmeta, Marta Gut, Jaume Bertranpetit, Ivo G Gut, Teresa Abello, Evan E Eichler, Ismael Mingarro, Carles Lalueza-Fox, Arcadi Navarro, Tomas Marques-Bonet et al. BMC Genomics 2013, 14:363 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed \| Editor’s summary A phenotypically unique gorilla carries a private non-synonymous substitution in a transmembrane domain in SLC45A2, one of the candidate genes associated with the OCA4 class of albinism
	3. 5792 Accesses	Research article A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers Michael A Quail, Miriam Smith, Paul Coupland, Thomas D Otto, Simon R Harris, Thomas R Connor, Anna Bertoni, Harold P Swerdlow, Yong Gu BMC Genomics 2012, 13:341 (24 July 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Sequencing of four microbial genomes with widely differing GC content is compared on performance using three major new platforms: Ion Torrent PGM, Pacific Biosciences RS, and illumina MiSeq versus Illumina HiSeq system.
	4. 2008 Accesses	Methodology article Optimizing de novo assembly of short-read RNA-seq data for phylogenomics Ya Yang, Stephen A Smith BMC Genomics 2013, 14:328 (14 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	5. 1873 Accesses	Software Web-based visual analysis for high-throughput genomics Jeremy Goecks, Carl Eberhard, Tomithy Too, Anton Nekrutenko, James Taylor BMC Genomics 2013, 14:397 (13 June 2013) Abstract \| Provisional PDF \| PubMed
	6. 1660 Accesses	Methodology article Phase-defined complete sequencing of the HLA genes by next-generation sequencing Kazuyoshi Hosomichi, Timothy A Jinam, Shigeki Mitsunaga, Hirofumi Nakaoka, Ituro Inoue BMC Genomics 2013, 14:355 (28 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	7. 1470 Accesses	Research article Characterization of human plasma-derived exosomal RNAs by deep sequencing Xiaoyi Huang, Tiezheng Yuan, Michael Tschannen, Zhifu Sun, Howard Jacob, Meijun Du, Meihua Liang, Rachel L Dittmar, Yong Liu, Mingyu Liang, Manish Kohli, Stephen N Thibodeau, Lisa Boardman, Liang Wang BMC Genomics 2013, 14:319 (10 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	8. 1460 Accesses	Research article Tomato breeding in the genomics era: insights from a SNP array Marcela Víquez-Zamora, Ben Vosman, Henri van de Geest, Arnaud Bovy, Richard GF Visser, Richard Finkers, Adriaan W van Heusden BMC Genomics 2013, 14:354 (27 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	9. 1404 Accesses	Research article Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions Liangliang Gao, Zheng Tu, Benjamin P Millett, James M Bradeen BMC Genomics 2013, 14:340 (23 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	10. 1265 Accesses	Research article Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing Robert Pinard, Alex de Winter, Gary J Sarkis, Mark B Gerstein, Karrie R Tartaro, Ramona N Plant, Michael Egholm, Jonathan M Rothberg, John H Leamon BMC Genomics 2006, 7:216 (23 August 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology
	11. 1252 Accesses	Research article Identification of miRNAs associated with sexual maturity in chicken ovary by Illumina small RNA deep sequencing Li Kang, Xinxing Cui, Yujie Zhang, Chunhong Yang, Yunliang Jiang BMC Genomics 2013, 14:352 (26 May 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary Using a small RNA deep sequencing method on sexually immature and mature chicken ovaries differentially expressed miRNAs were identified and validated, including gga-miR-1a and gga-miR-21 thereby indicating a role in the follicular growth or ovulation mechanism.
	12. 1249 Accesses	Research article RNA-seq analysis of single bovine blastocysts James L Chitwood, Gonzalo Rincon, German G Kaiser, Juan F Medrano, Pablo J Ross BMC Genomics 2013, 14:350 (25 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	13. 1177 Accesses	Research article RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species Steve Smith, Louis Bernatchez, Luciano B Beheregaray BMC Genomics 2013, 14:375 (5 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	14. 1162 Accesses	Research article Drosophila GAGA factor polyglutamine domains exhibit prion-like behavior Muhammad Tariq, Renee Wegrzyn, Saima Anwar, Bernd Bukau, Renato Paro BMC Genomics 2013, 14:374 (3 June 2013) Abstract \| Provisional PDF \| PubMed
	15. 1158 Accesses	Research article Draft genome sequence of the rubber tree Hevea brasiliensis Ahmad Yamin Abdul Rahman, Abhilash O Usharraj, Biswapriya B Misra, Gincy P Thottathil, Kandakumar Jayasekaran, Yun Feng, Shaobin Hou, Su Yean Ong, Fui Ling Ng, Ling Sze Lee, Hock Siew Tan, Muhd Khairul Luqman Muhd Sakaff, Beng Soon Teh, Bee Khoo, Siti Suriawati Badai, Nurohaida Ab Aziz, Anton Yuryev, Bjarne Knudsen, Alexandre Dionne-Laporte, Nokuthula P Mchunu, Qingyi Yu, Brennick J Langston, Tracey Allen K Freitas, Aaron G Young, Rui Chen, Lei Wang, Nazalan Najimudin, Jennifer A Saito, Maqsudul Alam BMC Genomics 2013, 14:75 (2 February 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The draft genome of the rubber tree Hevea brasiliensis is almost 80% repetitive DNA with 12.7% of genes models identified being unique to this species, including key rubber biosynthesis and disease resistance genes
	16. 1124 Accesses	Methodology article NEXT-peak: a normal-exponential two-peak model for peak-calling in ChIP-seq data Nak-Kyeong Kim, Rasika V Jayatillake, John L Spouge BMC Genomics 2013, 14:349 (25 May 2013) Abstract \| Full text \| PDF \| PubMed
	17. 1087 Accesses	Research article Genome-scale transcriptional analyses of first-generation interspecific sunflower hybrids reveals broad regulatory compatibility Heather C Rowe, Loren H Rieseberg BMC Genomics 2013, 14:342 (23 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	18. 1087 Accesses	Research article Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus Xun Chen, Xuemin Li, Bing Zhang, Jinsong Xu, Zhikun Wu, Bo Wang, Haitao Li, Muhammad Younas, Lei Huang, Yingfeng Luo, Jiangsheng Wu, Songnian Hu, Kede Liu BMC Genomics 2013, 14:346 (24 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	19. 1055 Accesses	Research article Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis Li Chen, Qun Yue, Xinyu Zhang, Meichun Xiang, Chengshu Wang, Shaojie Li, Yongsheng Che, Francisco Ortiz-López, Gerald F Bills, Xingzhong Liu, Zhiqiang An BMC Genomics 2013, 14:339 (20 May 2013) Abstract \| Full text \| PDF \| PubMed
	20. 1038 Accesses	Research article Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection Sheila Z Kimaro Mlacha, Teresa C T Peret, Nikhil Kumar, Sandra Romero-Steiner, Julie C Dunning Hotopp, Nadeeza Ishmael, Valerie Grinblat-Huse, David R Riley, Dean D Erdman, George M Carlone, Jacquelyn Sampson, J Anthony G Scott, Hervé Tettelin BMC Genomics 2013, 14:378 (7 June 2013) Abstract \| Full text \| PDF \| PubMed
	21. 1030 Accesses	Research article Behavioral and neurogenomic transcriptome changes in wild-derived zebrafish with fluoxetine treatment Ryan Y Wong, Sarah E Oxendine, John Godwin BMC Genomics 2013, 14:348 (24 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	22. 984 Accesses	Research article The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera Sajeet Haridas, Ye Wang, Lynette Lim, Sepideh Massoumi Alamouti, Shaun Jackman, Rod Docking, Gordon Robertson, Inanc Birol, Jörg Bohlmann, Colette Breuil BMC Genomics 2013, 14:373 (2 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	23. 973 Accesses	Methodology article A simple and reproducible breast cancer prognostic test Luigi Marchionni, Bahman Afsari, Donald Geman, Jeffrey T Leek BMC Genomics 2013, 14:336 (17 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	24. 961 Accesses	Research article Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor Franc Llorens, Manuela Hummel, Lorena Pantano, Xavier Pastor, Ana Vivancos, Ester Castillo, Heidi Mattlin, Anna Ferrer, Matthew Ingham, Marc Noguera, Robert Kofler, Juliane C Dohm, Raquel Pluvinet, Mònica Bayés, Heinz Himmelbauer, José del Rio, Eulàlia Martí, Lauro Sumoy BMC Genomics 2013, 14:371 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	25. 941 Accesses	Research article RAD tag sequencing as a source of SNP markers in Cynara cardunculus L Davide Scaglione, Alberto Acquadro, Ezio Portis, Matteo Tirone, Steven J Knapp, Sergio Lanteri BMC Genomics 2012, 13:3 (3 January 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central