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	76.	Research Transcription network construction for large-scale microarray datasets using a high-performance computing approach Mengxia (Michelle) Zhu, Qishi Wu BMC Genomics 2008, 9(Suppl 1):S5 (20 March 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	77.	Research article A physical map of human Alu repeats cleavage by restriction endonucleases Murat A Abdurashitov, Victor N Tomilov, Valery A Chernukhin, Sergey Degtyarev BMC Genomics 2008, 9:305 (26 June 2008) Abstract \| Full text \| PDF \| PubMed
	78.	Research article Comparison of prognostic gene expression signatures for breast cancer Benjamin Haibe-Kains, Christine Desmedt, Fanny Piette, Marc Buyse, Fatima Cardoso, Laura van't Veer, Martine Piccart, Gianluca Bontempi, Christos Sotiriou BMC Genomics 2008, 9:394 (21 August 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	79.	Research article Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis Benjamin Stich, Albrecht E Melchinger BMC Genomics 2009, 10:94 (27 February 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	80.	Research article Use of genome sequence data in the design and testing of SSR markers for Phytophthora species Leonardo Schena, Linda Cardle, David EL Cooke BMC Genomics 2008, 9:620 (19 December 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	81.	Research article Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades Frank Förster, Chunguang Liang, Alexander Shkumatov, Daniela Beisser, Julia C Engelmann, Martina Schnölzer, Marcus Frohme, Tobias Müller, Ralph O Schill, Thomas Dandekar BMC Genomics 2009, 10:469 (12 October 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	82.	Research article Correlations between RNA and protein expression profiles in 23 human cell lines Marcus Gry, Rebecca Rimini, Sara Strömberg, Anna Asplund, Fredrik Pontén, Mathias Uhlén, Peter Nilsson BMC Genomics 2009, 10:365 (7 August 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	83.	Research article Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects Dominik Lutter, Carsten Marr, Jan Krumsiek, Elmar W Lang, Fabian J Theis BMC Genomics 2010, 11:224 (6 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Host and target genes of intronic microRNAs show significantly correlated gene expression profiles, and functional similarities between host and predicted microRNA target genes indicate that microRNAs connect gene activity either synergistically or antagonistically.
	84.	Methodology article Exome-wide DNA capture and next generation sequencing in domestic and wild species Ted Cosart, Albano Beja-Pereira, Shanyuan Chen, Sarah B Ng, Jay Shendure, Gordon Luikart BMC Genomics 2011, 12:347 (5 July 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Exon capture successfully allows gene-targeted marker discovery in cattle and, using the cow genome as a reference, can be applied to non-model species, such as bison and zebu that lack the equivalent genomic resources.
	85.	Research article Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation Jasmin Schröder, Irena Maus, Eva Trost, Andreas Tauch BMC Genomics 2011, 12:545 (3 November 2011) Abstract \| Full text \| PDF \| PubMed
	86.	Research article Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells Georges St Laurent, Dmitry Shtokalo, Michael R Tackett, Zhaoqing Yang, Tatyana Eremina, Claes Wahlestedt, Silvio Urcuqui-Inchima, Bernd Seilheimer, Timothy A McCaffrey, Philipp Kapranov BMC Genomics 2012, 13:504 (24 September 2012) Abstract \| Full text \| PDF \| PubMed
	87.	Research article Improving mapping and SNP-calling performance in multiplexed targeted next-generation sequencing Abdou ElSharawy, Michael Forster, Nadine Schracke, Andreas Keller, Ingo Thomsen, Britt-Sabina Petersen, Björn Stade, Peer Stähler, Stefan Schreiber, Philip Rosenstiel, Andre Franke BMC Genomics 2012, 13:417 (22 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	88.	Research article Genome-wide survey of allele-specific splicing in humans Victoria Nembaware, Bukiwe Lupindo, Katherine Schouest, Charles Spillane, Konrad Scheffler, Cathal Seoighe BMC Genomics 2008, 9:265 (2 June 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	89.	Research article Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula Jiří Macas, Pavel Neumann, Alice Navrátilová BMC Genomics 2007, 8:427 (21 November 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	90.	Methodology article A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome Lucie Hanriot, Céline Keime, Nadine Gay, Claudine Faure, Carole Dossat, Patrick Wincker, Céline Scoté-Blachon, Christelle Peyron, Olivier Gandrillon BMC Genomics 2008, 9:418 (16 September 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	91.	Research article The theory of discovering rare variants via DNA sequencing Michael C Wendl, Richard K Wilson BMC Genomics 2009, 10:485 (20 October 2009) Abstract \| Full text \| PDF \| PubMed
	92.	Research article Major role for mRNA stability in shaping the kinetics of gene induction Ran Elkon, Eitan Zlotorynski, Karen I Zeller, Reuven Agami BMC Genomics 2010, 11:259 (21 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	93.	Research article A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling James R Bradford, Yvonne Hey, Tim Yates, Yaoyong Li, Stuart D Pepper, Crispin J Miller BMC Genomics 2010, 11:282 (5 May 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	94.	Research article Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua) Sophie Hubert, Brent Higgins, Tudor Borza, Sharen Bowman BMC Genomics 2010, 11:191 (22 March 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	95.	Software ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence Jose M Blanca, Laura Pascual, Peio Ziarsolo, Fernando Nuez, Joaquin Cañizares BMC Genomics 2011, 12:285 (2 June 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A new software pipeline, ngs_backbone, provides a flexible tool for read cleaning, transcriptome assembly and annotation, read mapping and single nucleotide polymorphism prediction of next generation sequencing data from several sequencing platforms.
	96.	Research article The human G93A-SOD1 mutation in a pre-symptomatic rat model of amyotrophic lateral sclerosis increases the vulnerability to a mild spinal cord compression Natasa Jokic, Ping K Yip, Adina Michael-Titus, John V Priestley, Andrea Malaspina BMC Genomics 2010, 11:633 (15 November 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	97.	Research article Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens Paul Wilkinson, Nicholas R Waterfield, Lisa Crossman, Craig Corton, Maria Sanchez-Contreras, Isabella Vlisidou, Andrew Barron, Alexandra Bignell, Louise Clark, Douglas Ormond, Matthew Mayho, Nathalie Bason, Frances Smith, Mark Simmonds, Carol Churcher, David Harris, Nicholas R Thompson, Michael Quail, Julian Parkhill, Richard H ffrench-Constant BMC Genomics 2009, 10:302 (7 July 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	98.	Research article Cartilage-selective genes identified in genome-scale analysis of non-cartilage and cartilage gene expression Vincent A Funari, Allen Day, Deborah Krakow, Zachary A Cohn, Zugen Chen, Stanley F Nelson, Daniel H Cohn BMC Genomics 2007, 8:165 (12 June 2007) Abstract \| Full text \| PDF \| PubMed
	99.	Research article Highly conserved gene order and numerous novel repetitive elements in genomic regions linked to wing pattern variation in Heliconius butterflies Riccardo Papa, Clayton M Morrison, James R Walters, Brian A Counterman, Rui Chen, Georg Halder, Laura Ferguson, Nicola Chamberlain, Richard ffrench-Constant, Durrell D Kapan, Chris D Jiggins, Robert D Reed, William O McMillan BMC Genomics 2008, 9:345 (22 July 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary High sequence homology, gene order conservation and microsynteny are detected in regions linked to three different loci that govern the mimetic wing color patterns in two related species of butterflies, Heliconius erato and H. melpomene.
	100.	Research article Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium Sriram Sridhar, Frank Schembri, Julie Zeskind, Vishal Shah, Adam M Gustafson, Katrina Steiling, Gang Liu, Yves-Martine Dumas, Xiaohui Zhang, Jerome S Brody, Marc E Lenburg, Avrum Spira BMC Genomics 2008, 9:259 (30 May 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central