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	1.	Research article The footprint of metabolism in the organization of mammalian genomes Luisa Berna, Ankita Chaurasia, Claudia Angelini, Concetta Federico, Salvatore Saccone, Giuseppe D'Onofrio BMC Genomics 2012, 13:174 (8 May 2012) Abstract \| Provisional PDF \| PubMed
	2.	Software Comparing thousands of circular genomes using the CGView Comparison Tool Jason R Grant, Adriano S Arantes, Paul Stothard BMC Genomics 2012, 13:202 (23 May 2012) Abstract \| Provisional PDF \| PubMed
	3.	Research article cDNA-AFLP analysis reveals differential gene expression in compatible interaction of wheat challenged with Puccinia striiformis f. sp. tritici Xiaojie Wang, Chunlei Tang, Gang Zhang, Yingchun Li, Chenfang Wang, Bo Liu, Zhipeng Qu, Jie Zhao, Qingmei Han, Lili Huang, Xianming Chen, Zhensheng Kang BMC Genomics 2009, 10:289 (30 June 2009) Abstract \| Full text \| PDF \| PubMed
	4.	Research article Development and implementation of high-throughput SNP genotyping in barley Timothy J Close, Prasanna R Bhat, Stefano Lonardi, Yonghui Wu, Nils Rostoks, Luke Ramsay, Arnis Druka, Nils Stein, Jan T Svensson, Steve Wanamaker, Serdar Bozdag, Mikeal L Roose, Matthew J Moscou, Shiaoman Chao, Rajeev K Varshney, Péter Szűcs, Kazuhiro Sato, Patrick M Hayes, David E Matthews, Andris Kleinhofs, Gary J Muehlbauer, Joseph DeYoung, David F Marshall, Kavitha Madishetty, Raymond D Fenton, Pascal Condamine, Andreas Graner, Robbie Waugh BMC Genomics 2009, 10:582 (4 December 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A high-density consensus genetic map of barley based only on complete and error-free datasets and genic markers, enables a high resolution comparison of barley and rice genomes and will aid marker-assisted breeding and association studies.
	5.	Research article The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants Pinja Jaspers, Kirk Overmyer, Michael Wrzaczek, Julia P Vainonen, Tiina Blomster, Jarkko Salojärvi, Ramesha A Reddy, Jaakko Kangasjärvi BMC Genomics 2010, 11:170 (12 March 2010) Abstract \| Full text \| PDF \| PubMed
	6.	Research article A deep investigation into the adipogenesis mechanism: Profile of microRNAs regulating adipogenesis by modulating the canonical Wnt/β-catenin signaling pathway Limei Qin, Yaosheng Chen, Yuna Niu, Weiquan Chen, Qiwei Wang, Shuqi Xiao, Anning Li, Ying Xie, Jing Li, Xiao Zhao, Zuyong He, Delin Mo BMC Genomics 2010, 11:320 (23 May 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	7.	Research article Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies Michael D Harwich, Joao M Alves, Gregory A Buck, Jerome F Strauss, Jennifer L Patterson, Aminat T Oki, Philippe H Girerd, Kimberly K Jefferson BMC Genomics 2010, 11:375 (11 June 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	8.	Research article Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence Nuria Fonknechten, Sébastien Chaussonnerie, Sabine Tricot, Aurélie Lajus, Jan R Andreesen, Nadia Perchat, Eric Pelletier, Michel Gouyvenoux, Valérie Barbe, Marcel Salanoubat, Denis Le Paslier, Jean Weissenbach, Georges N Cohen, Annett Kreimeyer BMC Genomics 2010, 11:555 (11 October 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	9.	Research article Comparative genomics of prevaccination and modern Bordetella pertussis strains Marieke J Bart, Marjolein van Gent, Han GJ van der Heide, Jos Boekhorst, Peter Hermans, Julian Parkhill, Frits R Mooi BMC Genomics 2010, 11:627 (11 November 2010) Abstract \| Full text \| PDF \| PubMed
	10.	Research article Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq Wen Huang, Hasan Khatib BMC Genomics 2010, 11:711 (17 December 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	11.	Research Analysis of deep sequencing microRNA expression profile from human embryonic stem cells derived mesenchymal stem cells reveals possible role of let-7 microRNA family in downstream targeting of Hepatic Nuclear Factor 4 Alpha Winston Koh, Chen Sheng, Betty Tan, Qian Lee, Vladimir Kuznetsov, Lim Kiang, Vivek Tanavde BMC Genomics 2010, 11(Suppl 1):S6 (10 February 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	12.	Research article Identification of surface proteins in Enterococcus faecalis V583 Liv Bøhle, Tahira Riaz, Wolfgang Egge-Jacobsen, Morten Skaugen, Øyvind L Busk, Vincent GH Eijsink, Geir Mathiesen BMC Genomics 2011, 12:135 (1 March 2011) Abstract \| Full text \| PDF \| PubMed
	13.	Methodology article RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization Tomas Hruz, Markus Wyss, Mylene Docquier, Michael W Pfaffl, Sabine Masanetz, Lorenzo Borghi, Phebe Verbrugghe, Luba Kalaydjieva, Stefan Bleuler, Oliver Laule, Patrick Descombes, Wilhelm Gruissem, Philip Zimmermann BMC Genomics 2011, 12:156 (21 March 2011) Abstract \| Full text \| PDF \| PubMed \| 1 comment
	14.	Software BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons Nabil-Fareed Alikhan, Nicola K Petty, Nouri L Ben Zakour, Scott A Beatson BMC Genomics 2011, 12:402 (8 August 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The BLAST Ring Image Generator (BRIG) software allows users to rapidly visualize comparisons between large numbers of bacterial genomes, including unfinished or unassembled genome data, in a single image.
	15.	Research article De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis Victor Zeng, Karina E Villanueva, Ben S Ewen-Campen, Frederike Alwes, William E Browne, Cassandra G Extavour BMC Genomics 2011, 12:581 (25 November 2011) Abstract \| Full text \| PDF \| PubMed
	16.	Research article Characterization of the Conus bullatus genome and its venom-duct transcriptome Hao Hu, Pradip K Bandyopadhyay, Baldomero M Olivera, Mark Yandell BMC Genomics 2011, 12:60 (25 January 2011) Abstract \| Full text \| PDF \| PubMed
	17.	Research article Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes Kate E Killick, John A Browne, Stephen DE Park, David A Magee, Irene Martin, Kieran G Meade, Stephen V Gordon, Eamonn Gormley, Cliona O'Farrelly, Karsten Hokamp, David E MacHugh BMC Genomics 2011, 12:611 (19 December 2011) Abstract \| Full text \| PDF \| PubMed
	18.	Research article Increasing the source/sink ratio in Vitis vinifera (cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening Chiara Pastore, Sara Zenoni, Giovanni Battista Tornielli, Gianluca Allegro, Silvia Dal Santo, Gabriele Valentini, Cesare Intrieri, Mario Pezzotti, Ilaria Filippetti BMC Genomics 2011, 12:631 (23 December 2011) Abstract \| Full text \| PDF \| PubMed
	19.	Proceedings Evaluation of short read metagenomic assembly Anveshi Charuvaka, Huzefa Rangwala BMC Genomics 2011, 12(Suppl 2):S8 (27 July 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	20.	Research article Evolutionary forces shaping genomic islands of population differentiation in humans Tamara Hofer, Matthieu Foll, Laurent Excoffier BMC Genomics 2012, 13:107 (22 March 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Research article Metabolic classification of microbial genomes using functional probes Chi-Ching Lee, Wei-Cheng Lo, Szu-Ming Lai, Yi-Ping Chen, Chuan Tang, Ping-Chiang Lyu BMC Genomics 2012, 13:157 (27 April 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Research article Characterization of host microRNAs that respond to DNA virus infection in a crustacean Tianzhi Huang, Dandan Xu, Xiaobo Zhang BMC Genomics 2012, 13:159 (30 April 2012) Abstract \| Provisional PDF \| PubMed
	23.	Research article Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma Elana J Fertig, Qing Ren, Haixia Cheng, Hiromitsu Hatakeyama, Adam Dicker, Ulrich Rodeck, Michael Considine, Michael F Ochs, Christine H Chung BMC Genomics 2012, 13:160 (1 May 2012) Abstract \| Provisional PDF \| PubMed \| Cited on BioMed Central
	24.	Research article Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes Patricia C Dos Santos, Zhong Fang, Steven W Mason, João C Setubal, Ray Dixon BMC Genomics 2012, 13:162 (3 May 2012) Abstract \| Provisional PDF \| PubMed
	25.	Methodology article GeSICA: Genome segmentation from intrachromosomal associations Lin Liu, Yiqian Zhang, Jianxing Feng, Ning Zheng, Junfeng Yin, Yong Zhang BMC Genomics 2012, 13:164 (4 May 2012) Abstract \| Provisional PDF \| PubMed