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1.

Research article   Open Access

Efficient utilization of aerobic metabolism helps Tibetan locusts conquer hypoxia

Dejian Zhao, Zhenyu Zhang, Arianne Cease, Jon Harrison, Le Kang BMC Genomics 2013, 14:631 (18 September 2013)

Abstract | Provisional PDF | PubMed

2.

Research   Open Access Highly Accessed

Unfoldomics of human diseases: linking protein intrinsic disorder with diseases

Vladimir N Uversky, Christopher J Oldfield, Uros Midic, Hongbo Xie, Bin Xue, Slobodan Vucetic, Lilia M Iakoucheva, Zoran Obradovic, A Keith Dunker BMC Genomics 2009, 10(Suppl 1):S7 (7 July 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

3.

Research article   Open Access

Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

Hiroaki Sakai, Takeshi Itoh BMC Genomics 2010, 11:121 (19 February 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

4.

Research article   Open Access Highly Accessed

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

Thomas L Parchman, Katherine S Geist, Johan A Grahnen, Craig W Benkman, C Alex Buerkle BMC Genomics 2010, 11:180 (16 March 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

5.

Research article   Open Access

Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

Ryouka Kawahara-Miki, Kaoru Tsuda, Yuh Shiwa, Yuko Arai-Kichise, Takashi Matsumoto, Yu Kanesaki, Sen-ichi Oda, Shizufumi Ebihara, Shunsuke Yajima, Hirofumi Yoshikawa, Tomohiro Kono BMC Genomics 2011, 12:103 (10 February 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

6.

Research article   Open Access Highly Accessed

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

André Gilles, Emese Meglécz, Nicolas Pech, Stéphanie Ferreira, Thibaut Malausa, Jean-François Martin BMC Genomics 2011, 12:245 (19 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

7.

Methodology article   Open Access Highly Accessed

Next-generation sequencing for HLA typing of class I loci

Rachel L Erlich, Xiaoming Jia, Scott Anderson, Eric Banks, Xiaojiang Gao, Mary Carrington, Namrata Gupta, Mark A DePristo, Matthew R Henn, Niall J Lennon, Paul IW de Bakker BMC Genomics 2011, 12:42 (18 January 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

8.

Research article   Open Access

Regional genome transcriptional response of adult mouse brain to hypoxia

Huichun Xu, Aigang Lu, Frank R Sharp BMC Genomics 2011, 12:499 (11 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

9.

Research article   Open Access Highly Accessed

Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction

Chuan-Yun Li, Wei-Zhen Zhou, Ping-Wu Zhang, Catherine Johnson, Liping Wei, George R Uhl BMC Genomics 2011, 12:508 (15 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

10.

Research article   Open Access Highly Accessed

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

Michael A Quail, Miriam Smith, Paul Coupland, Thomas D Otto, Simon R Harris, Thomas R Connor, Anna Bertoni, Harold P Swerdlow, Yong Gu BMC Genomics 2012, 13:341 (24 July 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Sequencing of four microbial genomes with widely differing GC content is compared on performance using three major new platforms: Ion Torrent PGM, Pacific Biosciences RS, and illumina MiSeq versus Illumina HiSeq system.

11.

Research article   Open Access

The polyphenol oxidase gene family in land plants: Lineage-specific duplication and expansion

Lan T Tran, John S Taylor, C Constabel BMC Genomics 2012, 13:395 (16 August 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

12.

Research article   Open Access

Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells

Mingzhu Zhu, Xin Deng, Trupti Joshi, Dong Xu, Gary Stacey, Jianlin Cheng BMC Genomics 2012, 13:437 (31 August 2012)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access

Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production

Jessica E Butler, Nelson D Young, Muktak Aklujkar, Derek R Lovley BMC Genomics 2012, 13:471 (12 September 2012)

Abstract | Full text | PDF | PubMed

14.

Proceedings   Open Access

miRNA arm selection and isomiR distribution in gastric cancer

Sung-Chou Li, Yu-Lun Liao, Meng-Ru Ho, Kuo-Wang Tsai, Chun-Hung Lai, Wen-chang Lin BMC Genomics 2012, 13(Suppl 1):S13 (17 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

15.

Research article   Open Access

A highly expressed miR-101 isomiR is a functional silencing small RNA

Franc Llorens, Mónica Bañez-Coronel, Lorena Pantano, Jose Antonio del Río, Isidre Ferrer, Xavier Estivill, Eulàlia Martí BMC Genomics 2013, 14:104 (15 February 2013)

Abstract | Full text | PDF | ePUB | PubMed

16.

Research article   Open Access

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism

Lea Atanasova, Stephane Le Crom, Sabine Gruber, Fanny Coulpier, Verena Seidl-Seiboth, Christian P Kubicek, Irina S Druzhinina BMC Genomics 2013, 14:121 (22 February 2013)

Abstract | Full text | PDF | PubMed

17.

Research article   Open Access Highly Accessed

RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome

Yvan Wenger, Brigitte Galliot BMC Genomics 2013, 14:204 (25 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

18.

Methodology article   Open Access

Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains

Vladimir Espinosa Angarica, Salvador Ventura, Javier Sancho BMC Genomics 2013, 14:316 (10 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

19.

Research article   Open Access

Transcriptome analysis reveals unique C4-like photosynthesis and oil body formation in an arachidonic acid-rich microalga Myrmecia incisa Reisigl H4301

Long-Ling Ouyang, Si-Hong Chen, Yan Li, Zhi-Gang Zhou BMC Genomics 2013, 14:396 (13 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

20.

Research article   Open Access Highly Accessed

Laser microdissection coupled with RNA-seq analysis of porcine enterocytes infected with an obligate intracellular pathogen (Lawsonia intracellularis)

Fabio A Vannucci, Douglas N Foster, Connie J Gebhart BMC Genomics 2013, 14:421 (24 June 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

21.

Research article   Open Access

Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity

Kyung-Tai Lee, Won-Hyong Chung, Sung-Yeoun Lee, Jung-Woo Choi, Jiwoong Kim, Dajeong Lim, Seunghwan Lee, Gul-Won Jang, Bumsoo Kim, Yun Choy, Xiaoping Liao, Paul Stothard, Stephen S Moore, Sang-Heon Lee, Sungmin Ahn, Namshin Kim, Tae-Hun Kim BMC Genomics 2013, 14:519 (30 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

22.

Methodology article   Open Access Highly Accessed

Sources of bias in measures of allele-specific expression derived from RNA-seq data aligned to a single reference genome

Kraig R Stevenson, Joseph D Coolon, Patricia J Wittkopp BMC Genomics 2013, 14:536 (7 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

23.

Research article   Open Access

MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout

Simone Sommer, Alexandre Courtiol, Camila J Mazzoni BMC Genomics 2013, 14:542 (9 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

24.

Research article   Open Access

Genetic basis of qualitative and quantitative resistance to powdery mildew in wheat: from consensus regions to candidate genes

Daniela Marone, Maria A Russo, Giovanni Laidò, Pasquale De Vita, Roberto Papa, Antonio Blanco, Agata Gadaleta, Diego Rubiales, Anna M Mastrangelo BMC Genomics 2013, 14:562 (19 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

25.

Research article   Open Access

Complete mitogenome of asiatic lion resolves phylogenetic status within Panthera

Snehal B Bagatharia, Madhvi N Joshi, Rohan V Pandya, Aanal S Pandit, Riddhi P Patel, Shivangi M Desai, Anu Sharma, Omkar Panchal, Falguni P Jasmani, Akshay K Saxena BMC Genomics 2013, 14:572 (23 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

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