BMC Genomics | All articles

Submit a manuscript Register Contact us Follow us on Twitter

Explore BMC Genomics

Advertisement

Articles

Supplements

Display/download options Articles per page: 25 | 50 | 100

Display options

Editor's summary Citation

Download options

Send
To

	All
		Research article Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach Nathaniel K Jue, Michael B Murphy, Seth D Kasowitz, Sohaib M Qureshi, Craig J Obergfell, Sahar Elsisi, Robert J Foley, Rachel J O’Neill, Michael J O’Neill BMC Genomics 2013, 14:150 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax Gonzalo Greif, Miguel Ponce de Leon, Guillermo Lamolle, Matías Rodriguez, Dolores Piñeyro, Lucinda M Tavares-Marques, Armando Reyna-Bello, Carlos Robello, Fernando Alvarez Valin BMC Genomics 2013, 14:149 (5 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs Anna Esteve-Codina, Yogesh Paudel, Luca Ferretti, Emanuele Raineri, Hendrik-Jan Megens, Luis Silió, María C Rodríguez, Martein AM Groenen, Sebastian E Ramos-Onsins, Miguel Pérez-Enciso BMC Genomics 2013, 14:148 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparison of the global gene expression of choroid plexus and meninges and associated vasculature under control conditions and after pronounced hyperthermia or amphetamine toxicity John F Bowyer, Tucker A Patterson, Upasana T Saini, Joseph P Hanig, Monzy Thomas, Luísa Camacho, Nysia I George, James J Chen BMC Genomics 2013, 14:147 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing Chao Liang, Xuan Liu, Siu-Ming Yiu, Boon Leong Lim BMC Genomics 2013, 14:146 (5 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosis from cynomolgus macaque infection Mark N Ragheb, Christopher B Ford, Michael R Chase, Philana Ling Lin, JoAnne L Flynn, Sarah M Fortune BMC Genomics 2013, 14:145 (5 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Biclustering for the comprehensive search of correlated gene expression patterns using clustered seed expansion Taegyun Yun, Gwan-Su Yi BMC Genomics 2013, 14:144 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide analysis of macrosatellite repeat copy number variation in worldwide populations: evidence for differences and commonalities in size distributions and size restrictions Mireille Schaap, Richard JLF Lemmers, Roel Maassen, Patrick J van der Vliet, Lennart F Hoogerheide, Herman K van Dijk, Nalan Baştürk, Peter de Knijff, Silvère M van der Maarel BMC Genomics 2013, 14:143 (4 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Tandem repeats derived from centromeric retrotransposons Anupma Sharma, Thomas K Wolfgruber, Gernot G Presting BMC Genomics 2013, 14:142 (4 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions Jainab Khatun, Yanbao Yu, John A Wrobel, Brian A Risk, Harsha P Gunawardena, Ashley Secrest, Wendy J Spitzer, Ling Xie, Li Wang, Xian Chen, Morgan C Giddings BMC Genomics 2013, 14:141 (28 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article MicroRNAs and their putative targets in Brassica napus seed maturation Daiqing Huang, Chushin Koh, J Allan Feurtado, Edward WT Tsang, Adrian J Cutler BMC Genomics 2013, 14:140 (28 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article MicroRNA miR-30 family regulates non-attachment growth of breast cancer cells Maria Ouzounova, Tri Vuong, Pierre-Benoit Ancey, Mylène Ferrand, Geoffroy Durand, Florence Le-Calvez Kelm, Carlo Croce, Chantal Matar, Zdenko Herceg, Hector Hernandez-Vargas BMC Genomics 2013, 14:139 (28 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article PacC and pH–dependent transcriptome of the mycotrophic fungus Trichoderma virens Naomi Trushina, Michal Levin, Prasun K Mukherjee, Benjamin A Horwitz BMC Genomics 2013, 14:138 (28 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation Glenn T Howe, Jianbin Yu, Brian Knaus, Richard Cronn, Scott Kolpak, Peter Dolan, W Walter Lorenz, Jeffrey FD Dean BMC Genomics 2013, 14:137 (28 February 2013) Abstract \| Provisional PDF \| PubMed
		Research article A Drosophila functional evaluation of candidates from human genome-wide association studies of type 2 diabetes and related metabolic traits identifies tissue-specific roles for dHHEX Jay Pendse, Prasanna V Ramachandran, Jianbo Na, Narisu Narisu, Jill L Fink, Ross L Cagan, Francis S Collins, Thomas J Baranski BMC Genomics 2013, 14:136 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum Amanda K Gibson, Zach Smith, Clay Fuqua, Keith Clay, John K Colbourne BMC Genomics 2013, 14:135 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Horizontal transfer of OC1 transposons in the Tasmanian devil Clement Gilbert, Paul Waters, Cedric Feschotte, Sarah Schaack BMC Genomics 2013, 14:134 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Pathway-focused bioassays and transcriptome analysis contribute to a better activity monitoring of complex herbal remedies Angela Klein, Oliver A Wrulich, Marcel Jenny, Peter Gruber, Kathrin Becker, Dietmar Fuchs, Johanna M Gostner, Florian Überall BMC Genomics 2013, 14:133 (27 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Accurate indel prediction using paired-end short reads Dominik Grimm, Jörg Hagmann, Daniel Koenig, Detlef Weigel, Karsten Borgwardt BMC Genomics 2013, 14:132 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins Li Jiang, Jicai Jiang, Jie Yang, Xuan Liu, Jiying Wang, Haifei Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang BMC Genomics 2013, 14:131 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Identification and functional analysis of cytochrome P450 complement in Streptomyces virginiae IBL14 Zhi-Zhen Li, Xiao-Fei Li, Wei Yang, Xiang Dong, Jie Yu, Shu-Liang Zhu, Man Li, Li Xie, Wang-Yu Tong BMC Genomics 2013, 14:130 (27 February 2013) Abstract \| Full text \| PDF \| PubMed
		Database Neurocarta: aggregating and sharing disease-gene relations for the neurosciences Elodie Portales-Casamar, Carolyn Ch’ng, Frances Lui, Nicolas St-Georges, Anton Zoubarev, Artemis Y Lai, Mark Lee, Cathy Kwok, Willie Kwok, Luchia Tseng, Paul Pavlidis BMC Genomics 2013, 14:129 (26 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data Nuno Sepúlveda, Susana G Campino, Samuel A Assefa, Colin J Sutherland, Arnab Pain, Taane G Clark BMC Genomics 2013, 14:128 (26 February 2013) Abstract \| Provisional PDF \| PubMed
		Research article Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation Scott E Levison, Paul Fisher, Jenny Hankinson, Leo Zeef, Steve Eyre, William E Ollier, John T McLaughlin, Andy Brass, Richard K Grencis, Joanne L Pennock BMC Genomics 2013, 14:127 (26 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Global analysis of transcriptional regulators in Staphylococcus aureus Jose Antonio Ibarra, Ernesto Pérez-Rueda, Ronan K Carroll, Lindsey N Shaw BMC Genomics 2013, 14:126 (26 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed

	All
		Research article Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach Nathaniel K Jue, Michael B Murphy, Seth D Kasowitz, Sohaib M Qureshi, Craig J Obergfell, Sahar Elsisi, Robert J Foley, Rachel J O’Neill, Michael J O’Neill BMC Genomics 2013, 14:150 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax Gonzalo Greif, Miguel Ponce de Leon, Guillermo Lamolle, Matías Rodriguez, Dolores Piñeyro, Lucinda M Tavares-Marques, Armando Reyna-Bello, Carlos Robello, Fernando Alvarez Valin BMC Genomics 2013, 14:149 (5 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs Anna Esteve-Codina, Yogesh Paudel, Luca Ferretti, Emanuele Raineri, Hendrik-Jan Megens, Luis Silió, María C Rodríguez, Martein AM Groenen, Sebastian E Ramos-Onsins, Miguel Pérez-Enciso BMC Genomics 2013, 14:148 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparison of the global gene expression of choroid plexus and meninges and associated vasculature under control conditions and after pronounced hyperthermia or amphetamine toxicity John F Bowyer, Tucker A Patterson, Upasana T Saini, Joseph P Hanig, Monzy Thomas, Luísa Camacho, Nysia I George, James J Chen BMC Genomics 2013, 14:147 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing Chao Liang, Xuan Liu, Siu-Ming Yiu, Boon Leong Lim BMC Genomics 2013, 14:146 (5 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosis from cynomolgus macaque infection Mark N Ragheb, Christopher B Ford, Michael R Chase, Philana Ling Lin, JoAnne L Flynn, Sarah M Fortune BMC Genomics 2013, 14:145 (5 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Biclustering for the comprehensive search of correlated gene expression patterns using clustered seed expansion Taegyun Yun, Gwan-Su Yi BMC Genomics 2013, 14:144 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide analysis of macrosatellite repeat copy number variation in worldwide populations: evidence for differences and commonalities in size distributions and size restrictions Mireille Schaap, Richard JLF Lemmers, Roel Maassen, Patrick J van der Vliet, Lennart F Hoogerheide, Herman K van Dijk, Nalan Baştürk, Peter de Knijff, Silvère M van der Maarel BMC Genomics 2013, 14:143 (4 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Tandem repeats derived from centromeric retrotransposons Anupma Sharma, Thomas K Wolfgruber, Gernot G Presting BMC Genomics 2013, 14:142 (4 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions Jainab Khatun, Yanbao Yu, John A Wrobel, Brian A Risk, Harsha P Gunawardena, Ashley Secrest, Wendy J Spitzer, Ling Xie, Li Wang, Xian Chen, Morgan C Giddings BMC Genomics 2013, 14:141 (28 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article MicroRNAs and their putative targets in Brassica napus seed maturation Daiqing Huang, Chushin Koh, J Allan Feurtado, Edward WT Tsang, Adrian J Cutler BMC Genomics 2013, 14:140 (28 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article MicroRNA miR-30 family regulates non-attachment growth of breast cancer cells Maria Ouzounova, Tri Vuong, Pierre-Benoit Ancey, Mylène Ferrand, Geoffroy Durand, Florence Le-Calvez Kelm, Carlo Croce, Chantal Matar, Zdenko Herceg, Hector Hernandez-Vargas BMC Genomics 2013, 14:139 (28 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article PacC and pH–dependent transcriptome of the mycotrophic fungus Trichoderma virens Naomi Trushina, Michal Levin, Prasun K Mukherjee, Benjamin A Horwitz BMC Genomics 2013, 14:138 (28 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation Glenn T Howe, Jianbin Yu, Brian Knaus, Richard Cronn, Scott Kolpak, Peter Dolan, W Walter Lorenz, Jeffrey FD Dean BMC Genomics 2013, 14:137 (28 February 2013) Abstract \| Provisional PDF \| PubMed
		Research article A Drosophila functional evaluation of candidates from human genome-wide association studies of type 2 diabetes and related metabolic traits identifies tissue-specific roles for dHHEX Jay Pendse, Prasanna V Ramachandran, Jianbo Na, Narisu Narisu, Jill L Fink, Ross L Cagan, Francis S Collins, Thomas J Baranski BMC Genomics 2013, 14:136 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum Amanda K Gibson, Zach Smith, Clay Fuqua, Keith Clay, John K Colbourne BMC Genomics 2013, 14:135 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Horizontal transfer of OC1 transposons in the Tasmanian devil Clement Gilbert, Paul Waters, Cedric Feschotte, Sarah Schaack BMC Genomics 2013, 14:134 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Pathway-focused bioassays and transcriptome analysis contribute to a better activity monitoring of complex herbal remedies Angela Klein, Oliver A Wrulich, Marcel Jenny, Peter Gruber, Kathrin Becker, Dietmar Fuchs, Johanna M Gostner, Florian Überall BMC Genomics 2013, 14:133 (27 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Accurate indel prediction using paired-end short reads Dominik Grimm, Jörg Hagmann, Daniel Koenig, Detlef Weigel, Karsten Borgwardt BMC Genomics 2013, 14:132 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins Li Jiang, Jicai Jiang, Jie Yang, Xuan Liu, Jiying Wang, Haifei Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang BMC Genomics 2013, 14:131 (27 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Identification and functional analysis of cytochrome P450 complement in Streptomyces virginiae IBL14 Zhi-Zhen Li, Xiao-Fei Li, Wei Yang, Xiang Dong, Jie Yu, Shu-Liang Zhu, Man Li, Li Xie, Wang-Yu Tong BMC Genomics 2013, 14:130 (27 February 2013) Abstract \| Full text \| PDF \| PubMed
		Database Neurocarta: aggregating and sharing disease-gene relations for the neurosciences Elodie Portales-Casamar, Carolyn Ch’ng, Frances Lui, Nicolas St-Georges, Anton Zoubarev, Artemis Y Lai, Mark Lee, Cathy Kwok, Willie Kwok, Luchia Tseng, Paul Pavlidis BMC Genomics 2013, 14:129 (26 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data Nuno Sepúlveda, Susana G Campino, Samuel A Assefa, Colin J Sutherland, Arnab Pain, Taane G Clark BMC Genomics 2013, 14:128 (26 February 2013) Abstract \| Provisional PDF \| PubMed
		Research article Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation Scott E Levison, Paul Fisher, Jenny Hankinson, Leo Zeef, Steve Eyre, William E Ollier, John T McLaughlin, Andy Brass, Richard K Grencis, Joanne L Pennock BMC Genomics 2013, 14:127 (26 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Global analysis of transcriptional regulators in Staphylococcus aureus Jose Antonio Ibarra, Ernesto Pérez-Rueda, Ronan K Carroll, Lindsey N Shaw BMC Genomics 2013, 14:126 (26 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed