BMC Genomics | All articles

Submit a manuscript Register Contact us Follow us on Twitter

Explore BMC Genomics

Advertisement

Articles

Supplements

Display/download options Articles per page: 25 | 50 | 100

Display options

Editor's summary Citation

Download options

Send
To

	All
		Research article Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans Yuru Zhang, Xiaoju Zou, Yihong Ding, Haizhen Wang, Xiaoyun Wu, Bin Liang BMC Genomics 2013, 14:164 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article DNA damage activates a complex transcriptional response in murine lymphocytes that includes both physiological and cancer-predisposition programs Cynthia L Innes, Jill E Hesse, Stela S Palii, Beth A Helmink, Abigail J Holub, Barry P Sleckman, Richard S Paules BMC Genomics 2013, 14:163 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Sequencing and annotation of the Ophiostoma ulmi genome Shima Khoshraftar, Stacy Hung, Sadia Khan, Yunchen Gong, Vibha Tyagi, John Parkinson, Mohini Sain, Alan M Moses, Dinesh Christendat BMC Genomics 2013, 14:162 (12 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Correction of unexpected distributions of P values from analysis of whole genome arrays by rectifying violation of statistical assumptions Sheila J Barton, Sarah R Crozier, Karen A Lillycrop, Keith M Godfrey, Hazel M Inskip BMC Genomics 2013, 14:161 (11 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens Yan-Yuan Bao, Lv-Yu Qu, Dong Zhao, Li-Bo Chen, Hong-Yuan Jin, Liang-Min Xu, Jia-An Cheng, Chuan-Xi Zhang BMC Genomics 2013, 14:160 (9 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Pearl millet [Pennisetum glaucum (L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs Vengaldas Rajaram, Thirunavukkarasu Nepolean, Senapathy Senthilvel, Rajeev K Varshney, Vincent Vadez, Rakesh K Srivastava, Trushar M Shah, Ambawat Supriya, Sushil Kumar, Basava Ramana Kumari, Amindala Bhanuprakash, Mangamoori Lakshmi Narasu, Oscar Riera-Lizarazu, Charles Thomas Hash BMC Genomics 2013, 14:159 (9 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses Adrien Jeanniard, David D Dunigan, James R Gurnon, Irina V Agarkova, Ming Kang, Jason Vitek, Garry Duncan, O McClung, Megan Larsen, Jean-Michel Claverie, James L Van Etten, Guillaume Blanc BMC Genomics 2013, 14:158 (8 March 2013) Abstract \| Full text \| PDF \| PubMed \| 1 comment
		Research article Characterization and differential expression of microRNAs in the ovaries of pregnant and non-pregnant goats (Capra hircus) Xiao-Dong Zhang, Yun-Hai Zhang, Ying-Hui Ling, Ya Liu, Hong-Guo Cao, Zong-Jun Yin, Jian-Ping Ding, Xiao-Rong Zhang BMC Genomics 2013, 14:157 (7 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021 Jan-Philip Schlüter, Jan Reinkensmeier, Melanie J Barnett, Claus Lang, Elizaveta Krol, Robert Giegerich, Sharon R Long, Anke Becker BMC Genomics 2013, 14:156 (7 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Integrated metabolomics and genomics analysis provides new insights into the fiber elongation process in Ligon lintless-2 mutant cotton (Gossypium hirsutum L.) Marina Naoumkina, Doug J Hinchliffe, Rickie B Turley, John M Bland, David D Fang BMC Genomics 2013, 14:155 (7 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Population-genomic variation within RNA viruses of the Western honey bee, Apis mellifera, inferred from deep sequencing Robert Scott Cornman, Humberto Boncristiani, Benjamin Dainat, Yanping Chen, Dennis vanEngelsdorp, Daniel Weaver, Jay D Evans BMC Genomics 2013, 14:154 (7 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15 Gesiele Almeida Barros de Carvalho, Jesiane Stefânia Silva Batista, Francismar Corrêa Marcelino-Guimarães, Leandro Costa do Nascimento, Mariangela Hungria BMC Genomics 2013, 14:153 (6 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Multigenic nature of the mouse pulmonary adenoma progression 1 locus Alice Dassano, Sara Noci, Federica Galbiati, Francesca Colombo, Gaia Trincucci, Angela Pettinicchio, Tommaso A Dragani, Giacomo Manenti BMC Genomics 2013, 14:152 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genetic dissection of growth traits in a Chinese indigenous x commercial broiler chicken cross Zheya Sheng, Mats E Pettersson, Xiaoxiang Hu, Chenglong Luo, Hao Qu, Dingming Shu, Xia Shen, Örjan Carlborg, Ning Li BMC Genomics 2013, 14:151 (6 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach Nathaniel K Jue, Michael B Murphy, Seth D Kasowitz, Sohaib M Qureshi, Craig J Obergfell, Sahar Elsisi, Robert J Foley, Rachel J O’Neill, Michael J O’Neill BMC Genomics 2013, 14:150 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax Gonzalo Greif, Miguel Ponce de Leon, Guillermo Lamolle, Matías Rodriguez, Dolores Piñeyro, Lucinda M Tavares-Marques, Armando Reyna-Bello, Carlos Robello, Fernando Alvarez Valin BMC Genomics 2013, 14:149 (5 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs Anna Esteve-Codina, Yogesh Paudel, Luca Ferretti, Emanuele Raineri, Hendrik-Jan Megens, Luis Silió, María C Rodríguez, Martein AM Groenen, Sebastian E Ramos-Onsins, Miguel Pérez-Enciso BMC Genomics 2013, 14:148 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparison of the global gene expression of choroid plexus and meninges and associated vasculature under control conditions and after pronounced hyperthermia or amphetamine toxicity John F Bowyer, Tucker A Patterson, Upasana T Saini, Joseph P Hanig, Monzy Thomas, Luísa Camacho, Nysia I George, James J Chen BMC Genomics 2013, 14:147 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing Chao Liang, Xuan Liu, Siu-Ming Yiu, Boon Leong Lim BMC Genomics 2013, 14:146 (5 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosis from cynomolgus macaque infection Mark N Ragheb, Christopher B Ford, Michael R Chase, Philana Ling Lin, JoAnne L Flynn, Sarah M Fortune BMC Genomics 2013, 14:145 (5 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Biclustering for the comprehensive search of correlated gene expression patterns using clustered seed expansion Taegyun Yun, Gwan-Su Yi BMC Genomics 2013, 14:144 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide analysis of macrosatellite repeat copy number variation in worldwide populations: evidence for differences and commonalities in size distributions and size restrictions Mireille Schaap, Richard JLF Lemmers, Roel Maassen, Patrick J van der Vliet, Lennart F Hoogerheide, Herman K van Dijk, Nalan Baştürk, Peter de Knijff, Silvère M van der Maarel BMC Genomics 2013, 14:143 (4 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Tandem repeats derived from centromeric retrotransposons Anupma Sharma, Thomas K Wolfgruber, Gernot G Presting BMC Genomics 2013, 14:142 (4 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions Jainab Khatun, Yanbao Yu, John A Wrobel, Brian A Risk, Harsha P Gunawardena, Ashley Secrest, Wendy J Spitzer, Ling Xie, Li Wang, Xian Chen, Morgan C Giddings BMC Genomics 2013, 14:141 (28 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article MicroRNAs and their putative targets in Brassica napus seed maturation Daiqing Huang, Chushin Koh, J Allan Feurtado, Edward WT Tsang, Adrian J Cutler BMC Genomics 2013, 14:140 (28 February 2013) Abstract \| Full text \| PDF \| PubMed

	All
		Research article Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans Yuru Zhang, Xiaoju Zou, Yihong Ding, Haizhen Wang, Xiaoyun Wu, Bin Liang BMC Genomics 2013, 14:164 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article DNA damage activates a complex transcriptional response in murine lymphocytes that includes both physiological and cancer-predisposition programs Cynthia L Innes, Jill E Hesse, Stela S Palii, Beth A Helmink, Abigail J Holub, Barry P Sleckman, Richard S Paules BMC Genomics 2013, 14:163 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Sequencing and annotation of the Ophiostoma ulmi genome Shima Khoshraftar, Stacy Hung, Sadia Khan, Yunchen Gong, Vibha Tyagi, John Parkinson, Mohini Sain, Alan M Moses, Dinesh Christendat BMC Genomics 2013, 14:162 (12 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Correction of unexpected distributions of P values from analysis of whole genome arrays by rectifying violation of statistical assumptions Sheila J Barton, Sarah R Crozier, Karen A Lillycrop, Keith M Godfrey, Hazel M Inskip BMC Genomics 2013, 14:161 (11 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens Yan-Yuan Bao, Lv-Yu Qu, Dong Zhao, Li-Bo Chen, Hong-Yuan Jin, Liang-Min Xu, Jia-An Cheng, Chuan-Xi Zhang BMC Genomics 2013, 14:160 (9 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Pearl millet [Pennisetum glaucum (L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs Vengaldas Rajaram, Thirunavukkarasu Nepolean, Senapathy Senthilvel, Rajeev K Varshney, Vincent Vadez, Rakesh K Srivastava, Trushar M Shah, Ambawat Supriya, Sushil Kumar, Basava Ramana Kumari, Amindala Bhanuprakash, Mangamoori Lakshmi Narasu, Oscar Riera-Lizarazu, Charles Thomas Hash BMC Genomics 2013, 14:159 (9 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses Adrien Jeanniard, David D Dunigan, James R Gurnon, Irina V Agarkova, Ming Kang, Jason Vitek, Garry Duncan, O McClung, Megan Larsen, Jean-Michel Claverie, James L Van Etten, Guillaume Blanc BMC Genomics 2013, 14:158 (8 March 2013) Abstract \| Full text \| PDF \| PubMed \| 1 comment
		Research article Characterization and differential expression of microRNAs in the ovaries of pregnant and non-pregnant goats (Capra hircus) Xiao-Dong Zhang, Yun-Hai Zhang, Ying-Hui Ling, Ya Liu, Hong-Guo Cao, Zong-Jun Yin, Jian-Ping Ding, Xiao-Rong Zhang BMC Genomics 2013, 14:157 (7 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021 Jan-Philip Schlüter, Jan Reinkensmeier, Melanie J Barnett, Claus Lang, Elizaveta Krol, Robert Giegerich, Sharon R Long, Anke Becker BMC Genomics 2013, 14:156 (7 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Integrated metabolomics and genomics analysis provides new insights into the fiber elongation process in Ligon lintless-2 mutant cotton (Gossypium hirsutum L.) Marina Naoumkina, Doug J Hinchliffe, Rickie B Turley, John M Bland, David D Fang BMC Genomics 2013, 14:155 (7 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Population-genomic variation within RNA viruses of the Western honey bee, Apis mellifera, inferred from deep sequencing Robert Scott Cornman, Humberto Boncristiani, Benjamin Dainat, Yanping Chen, Dennis vanEngelsdorp, Daniel Weaver, Jay D Evans BMC Genomics 2013, 14:154 (7 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15 Gesiele Almeida Barros de Carvalho, Jesiane Stefânia Silva Batista, Francismar Corrêa Marcelino-Guimarães, Leandro Costa do Nascimento, Mariangela Hungria BMC Genomics 2013, 14:153 (6 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Multigenic nature of the mouse pulmonary adenoma progression 1 locus Alice Dassano, Sara Noci, Federica Galbiati, Francesca Colombo, Gaia Trincucci, Angela Pettinicchio, Tommaso A Dragani, Giacomo Manenti BMC Genomics 2013, 14:152 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genetic dissection of growth traits in a Chinese indigenous x commercial broiler chicken cross Zheya Sheng, Mats E Pettersson, Xiaoxiang Hu, Chenglong Luo, Hao Qu, Dingming Shu, Xia Shen, Örjan Carlborg, Ning Li BMC Genomics 2013, 14:151 (6 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach Nathaniel K Jue, Michael B Murphy, Seth D Kasowitz, Sohaib M Qureshi, Craig J Obergfell, Sahar Elsisi, Robert J Foley, Rachel J O’Neill, Michael J O’Neill BMC Genomics 2013, 14:150 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax Gonzalo Greif, Miguel Ponce de Leon, Guillermo Lamolle, Matías Rodriguez, Dolores Piñeyro, Lucinda M Tavares-Marques, Armando Reyna-Bello, Carlos Robello, Fernando Alvarez Valin BMC Genomics 2013, 14:149 (5 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs Anna Esteve-Codina, Yogesh Paudel, Luca Ferretti, Emanuele Raineri, Hendrik-Jan Megens, Luis Silió, María C Rodríguez, Martein AM Groenen, Sebastian E Ramos-Onsins, Miguel Pérez-Enciso BMC Genomics 2013, 14:148 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparison of the global gene expression of choroid plexus and meninges and associated vasculature under control conditions and after pronounced hyperthermia or amphetamine toxicity John F Bowyer, Tucker A Patterson, Upasana T Saini, Joseph P Hanig, Monzy Thomas, Luísa Camacho, Nysia I George, James J Chen BMC Genomics 2013, 14:147 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing Chao Liang, Xuan Liu, Siu-Ming Yiu, Boon Leong Lim BMC Genomics 2013, 14:146 (5 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosis from cynomolgus macaque infection Mark N Ragheb, Christopher B Ford, Michael R Chase, Philana Ling Lin, JoAnne L Flynn, Sarah M Fortune BMC Genomics 2013, 14:145 (5 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Biclustering for the comprehensive search of correlated gene expression patterns using clustered seed expansion Taegyun Yun, Gwan-Su Yi BMC Genomics 2013, 14:144 (5 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide analysis of macrosatellite repeat copy number variation in worldwide populations: evidence for differences and commonalities in size distributions and size restrictions Mireille Schaap, Richard JLF Lemmers, Roel Maassen, Patrick J van der Vliet, Lennart F Hoogerheide, Herman K van Dijk, Nalan Baştürk, Peter de Knijff, Silvère M van der Maarel BMC Genomics 2013, 14:143 (4 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Tandem repeats derived from centromeric retrotransposons Anupma Sharma, Thomas K Wolfgruber, Gernot G Presting BMC Genomics 2013, 14:142 (4 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions Jainab Khatun, Yanbao Yu, John A Wrobel, Brian A Risk, Harsha P Gunawardena, Ashley Secrest, Wendy J Spitzer, Ling Xie, Li Wang, Xian Chen, Morgan C Giddings BMC Genomics 2013, 14:141 (28 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article MicroRNAs and their putative targets in Brassica napus seed maturation Daiqing Huang, Chushin Koh, J Allan Feurtado, Edward WT Tsang, Adrian J Cutler BMC Genomics 2013, 14:140 (28 February 2013) Abstract \| Full text \| PDF \| PubMed