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		Research article Deep sequencing and genome-wide analysis reveals the expansion of MicroRNA genes in the gall midge Mayetiola destructor Chitvan Khajuria, Christie E Williams, Mustapha El Bouhssini, R Jeff Whitworth, Stephen Richards, Jeffrey J Stuart, Ming-Shun Chen BMC Genomics 2013, 14:187 (18 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation Guoqing Pan, Jinshan Xu, Tian Li, Qingyou Xia, Shao-Lun Liu, Guojie Zhang, Songgang Li, Chunfeng Li, Handeng Liu, Liu Yang, Tie Liu, Xi Zhang, Zhengli Wu, Wei Fan, Xiaoqun Dang, Heng Xiang, Meilin Tao, Yanhong Li, Junhua Hu, Zhi Li, Lipeng Lin, Jie Luo, Lina Geng, LinLing Wang, Mengxian Long, Yongji Wan, Ningjia He, Ze Zhang, Cheng Lu, Patrick J Keeling, Jun Wang, Zhonghuai Xiang, Zeyang Zhou et al. BMC Genomics 2013, 14:186 (16 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer BMC Genomics 2013, 14:185 (16 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Differential miRNA expression profiles in proliferating or differentiated keratinocytes in response to gamma irradiation Nicolas Joly-Tonetti, José Viñuelas, Olivier Gandrillon, Jérôme Lamartine BMC Genomics 2013, 14:184 (16 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Global proteomic analysis of the oocyst/sporozoite of Toxoplasma gondii reveals commitment to a host-independent lifestyle Alessia Possenti, Federica Fratini, Luca Fantozzi, Edoardo Pozio, Jitender P Dubey, Marta Ponzi, Elisabetta Pizzi, Furio Spano BMC Genomics 2013, 14:183 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Distinct angiogenesis roles and surface markers of early and late endothelial progenitor cells revealed by functional group analyses Cheng-Chung Cheng, Shing-Jyh Chang, Yu-Neng Chueh, Tse-Shun Huang, Po-Hsun Huang, Shu-Meng Cheng, Tsung-Neng Tsai, Jaw-Wen Chen, Hsei-Wei Wang BMC Genomics 2013, 14:182 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Efficient recovery of proteins from multiple source samples after trizol^{^®} or trizol^{^®}LS RNA extraction and long-term storage André ES Simões, Diane M Pereira, Joana D Amaral, Ana F Nunes, Sofia E Gomes, Pedro M Rodrigues, Adrian C Lo, Rudi D'Hooge, Clifford J Steer, Stephen N Thibodeau, Pedro M Borralho, Cecília MP Rodrigues BMC Genomics 2013, 14:181 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A combined strategy involving Sanger and 454 pyrosequencing increases genomic resources to aid in the management of reproduction, disease control and genetic selection in the turbot (Scophthalmus maximus) Laia Ribas, Belén G Pardo, Carlos Fernández, José Antonio Álvarez-Diós, Antonio Gómez-Tato, María Isabel Quiroga, Josep V Planas, Ariadna Sitjà-Bobadilla, Paulino Martínez, Francesc Piferrer BMC Genomics 2013, 14:180 (15 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article miRConnect 2.0: identification of oncogenic, antagonistic miRNA families in three human cancers Youjia Hua, Niels Larsen, Shanker Kalyana-Sundaram, Jørgen Kjems, Arul M Chinnaiyan, Marcus E Peter BMC Genomics 2013, 14:179 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Deep sequencing for de novo construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcripts Josep A Calduch-Giner, Azucena Bermejo-Nogales, Laura Benedito-Palos, Itziar Estensoro, Gabriel Ballester-Lozano, Ariadna Sitjà-Bobadilla, Jaume Pérez-Sánchez BMC Genomics 2013, 14:178 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Identification of differentially expressed genes from Trichoderma harzianum during growth on cell wall of Fusarium solani as a tool for biotechnological application Pabline Marinho Vieira, Alexandre Siqueira Guedes Coelho, Andrei Stecca Steindorff, Saulo José Linhares de Siqueira, Roberto do Nascimento Silva, Cirano José Ulhoa BMC Genomics 2013, 14:177 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article High-utility conserved avian microsatellite markers enable parentage and population studies across a wide range of species Deborah A Dawson, Alexander D Ball, Lewis G Spurgin, David Martín-Gálvez, Ian R K Stewart, Gavin J Horsburgh, Jonathan Potter, Mercedes Molina-Morales, Anthony W J Bicknell, Stephanie A J Preston, Robert Ekblom, Jon Slate, Terry Burke BMC Genomics 2013, 14:176 (15 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis Franciele Maboni Siqueira, Claudia Elizabeth Thompson, Veridiana Gomes Virginio, Taylor Gonchoroski, Luciano Reolon, Luiz Gonzaga Almeida, Marbella Maria da Fonsêca, Rangel de Souza, Francisco Prosdocimi, Irene Silveira Schrank, Henrique Bunselmeyer Ferreira, Ana Tereza Ribeiro de Vasconcelos, Arnaldo Zaha BMC Genomics 2013, 14:175 (14 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Integrated analysis of cytochrome P450 gene superfamily in the red flour beetle, Tribolium castaneum Fang Zhu, Timothy W Moural, Kapil Shah, Subba Reddy Palli BMC Genomics 2013, 14:174 (14 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Gene expression profiling of the hyperplastic growth zones of the late trout embryo myotome using laser capture microdissection and microarray analysis Pierre-Yves Rescan, Jerome Montfort, Alain Fautrel, Cécile Rallière, Veronique Lebret BMC Genomics 2013, 14:173 (14 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A kinetic model of the evolution of a protein interaction network Piotr H Pawlowski, Szymon Kaczanowski, Piotr Zielenkiewicz BMC Genomics 2013, 14:172 (14 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Transcriptomics of morphological color change in polychromatic Midas cichlids Frederico Henning, Julia C Jones, Paolo Franchini, Axel Meyer BMC Genomics 2013, 14:171 (13 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Characterization of expressed sequence tags from developing fibers of Gossypium barbadense and evaluation of insertion-deletion variation in tetraploid cultivated cotton species Yuanda Lv, Liang Zhao, Xiaoyang Xu, Lei Wang, Cheng Wang, Tianzhen Zhang, Wangzhen Guo BMC Genomics 2013, 14:170 (13 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome analysis of pigeon milk production – role of cornification and triglyceride synthesis genes Meagan J Gillespie, Tamsyn M Crowley, Volker R Haring, Susanne L Wilson, Jennifer A Harper, Jean S Payne, Diane Green, Paul Monaghan, John A Donald, Kevin R Nicholas, Robert J Moore BMC Genomics 2013, 14:169 (13 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article De-novo assembly and characterization of the transcriptome of Metschnikowia fructicola reveals differences in gene expression following interaction with Penicillium digitatum and grapefruit peel Vera Hershkovitz, Noa Sela, Leena Taha-Salaime, Jia Liu, Ginat Rafael, Clarita Kessler, Radi Aly, Maggie Levy, Michael Wisniewski, Samir Droby BMC Genomics 2013, 14:168 (12 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly Warren R Francis, Lynne M Christianson, Rainer Kiko, Meghan L Powers, Nathan C Shaner, Steven H D Haddock BMC Genomics 2013, 14:167 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative analysis of protein-protein interactions in the defense response of rice and wheat Dario Cantu, Baoju Yang, Randy Ruan, Kun Li, Virginia Menzo, Daolin Fu, Mawsheng Chern, Pamela C Ronald, Jorge Dubcovsky BMC Genomics 2013, 14:166 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing Xiang Jiao, Sean D Hooper, Tatjana Djureinovic, Chatarina Larsson, Fredrik Wärnberg, Christian Tellgren-Roth, Johan Botling, Tobias Sjöblom BMC Genomics 2013, 14:165 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans Yuru Zhang, Xiaoju Zou, Yihong Ding, Haizhen Wang, Xiaoyun Wu, Bin Liang BMC Genomics 2013, 14:164 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article DNA damage activates a complex transcriptional response in murine lymphocytes that includes both physiological and cancer-predisposition programs Cynthia L Innes, Jill E Hesse, Stela S Palii, Beth A Helmink, Abigail J Holub, Barry P Sleckman, Richard S Paules BMC Genomics 2013, 14:163 (12 March 2013) Abstract \| Full text \| PDF \| PubMed

	All
		Research article Deep sequencing and genome-wide analysis reveals the expansion of MicroRNA genes in the gall midge Mayetiola destructor Chitvan Khajuria, Christie E Williams, Mustapha El Bouhssini, R Jeff Whitworth, Stephen Richards, Jeffrey J Stuart, Ming-Shun Chen BMC Genomics 2013, 14:187 (18 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation Guoqing Pan, Jinshan Xu, Tian Li, Qingyou Xia, Shao-Lun Liu, Guojie Zhang, Songgang Li, Chunfeng Li, Handeng Liu, Liu Yang, Tie Liu, Xi Zhang, Zhengli Wu, Wei Fan, Xiaoqun Dang, Heng Xiang, Meilin Tao, Yanhong Li, Junhua Hu, Zhi Li, Lipeng Lin, Jie Luo, Lina Geng, LinLing Wang, Mengxian Long, Yongji Wan, Ningjia He, Ze Zhang, Cheng Lu, Patrick J Keeling, Jun Wang, Zhonghuai Xiang, Zeyang Zhou et al. BMC Genomics 2013, 14:186 (16 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer BMC Genomics 2013, 14:185 (16 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Differential miRNA expression profiles in proliferating or differentiated keratinocytes in response to gamma irradiation Nicolas Joly-Tonetti, José Viñuelas, Olivier Gandrillon, Jérôme Lamartine BMC Genomics 2013, 14:184 (16 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Global proteomic analysis of the oocyst/sporozoite of Toxoplasma gondii reveals commitment to a host-independent lifestyle Alessia Possenti, Federica Fratini, Luca Fantozzi, Edoardo Pozio, Jitender P Dubey, Marta Ponzi, Elisabetta Pizzi, Furio Spano BMC Genomics 2013, 14:183 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Distinct angiogenesis roles and surface markers of early and late endothelial progenitor cells revealed by functional group analyses Cheng-Chung Cheng, Shing-Jyh Chang, Yu-Neng Chueh, Tse-Shun Huang, Po-Hsun Huang, Shu-Meng Cheng, Tsung-Neng Tsai, Jaw-Wen Chen, Hsei-Wei Wang BMC Genomics 2013, 14:182 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Efficient recovery of proteins from multiple source samples after trizol^{^®} or trizol^{^®}LS RNA extraction and long-term storage André ES Simões, Diane M Pereira, Joana D Amaral, Ana F Nunes, Sofia E Gomes, Pedro M Rodrigues, Adrian C Lo, Rudi D'Hooge, Clifford J Steer, Stephen N Thibodeau, Pedro M Borralho, Cecília MP Rodrigues BMC Genomics 2013, 14:181 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A combined strategy involving Sanger and 454 pyrosequencing increases genomic resources to aid in the management of reproduction, disease control and genetic selection in the turbot (Scophthalmus maximus) Laia Ribas, Belén G Pardo, Carlos Fernández, José Antonio Álvarez-Diós, Antonio Gómez-Tato, María Isabel Quiroga, Josep V Planas, Ariadna Sitjà-Bobadilla, Paulino Martínez, Francesc Piferrer BMC Genomics 2013, 14:180 (15 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article miRConnect 2.0: identification of oncogenic, antagonistic miRNA families in three human cancers Youjia Hua, Niels Larsen, Shanker Kalyana-Sundaram, Jørgen Kjems, Arul M Chinnaiyan, Marcus E Peter BMC Genomics 2013, 14:179 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Deep sequencing for de novo construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcripts Josep A Calduch-Giner, Azucena Bermejo-Nogales, Laura Benedito-Palos, Itziar Estensoro, Gabriel Ballester-Lozano, Ariadna Sitjà-Bobadilla, Jaume Pérez-Sánchez BMC Genomics 2013, 14:178 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Identification of differentially expressed genes from Trichoderma harzianum during growth on cell wall of Fusarium solani as a tool for biotechnological application Pabline Marinho Vieira, Alexandre Siqueira Guedes Coelho, Andrei Stecca Steindorff, Saulo José Linhares de Siqueira, Roberto do Nascimento Silva, Cirano José Ulhoa BMC Genomics 2013, 14:177 (15 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article High-utility conserved avian microsatellite markers enable parentage and population studies across a wide range of species Deborah A Dawson, Alexander D Ball, Lewis G Spurgin, David Martín-Gálvez, Ian R K Stewart, Gavin J Horsburgh, Jonathan Potter, Mercedes Molina-Morales, Anthony W J Bicknell, Stephanie A J Preston, Robert Ekblom, Jon Slate, Terry Burke BMC Genomics 2013, 14:176 (15 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis Franciele Maboni Siqueira, Claudia Elizabeth Thompson, Veridiana Gomes Virginio, Taylor Gonchoroski, Luciano Reolon, Luiz Gonzaga Almeida, Marbella Maria da Fonsêca, Rangel de Souza, Francisco Prosdocimi, Irene Silveira Schrank, Henrique Bunselmeyer Ferreira, Ana Tereza Ribeiro de Vasconcelos, Arnaldo Zaha BMC Genomics 2013, 14:175 (14 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Integrated analysis of cytochrome P450 gene superfamily in the red flour beetle, Tribolium castaneum Fang Zhu, Timothy W Moural, Kapil Shah, Subba Reddy Palli BMC Genomics 2013, 14:174 (14 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Gene expression profiling of the hyperplastic growth zones of the late trout embryo myotome using laser capture microdissection and microarray analysis Pierre-Yves Rescan, Jerome Montfort, Alain Fautrel, Cécile Rallière, Veronique Lebret BMC Genomics 2013, 14:173 (14 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A kinetic model of the evolution of a protein interaction network Piotr H Pawlowski, Szymon Kaczanowski, Piotr Zielenkiewicz BMC Genomics 2013, 14:172 (14 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Transcriptomics of morphological color change in polychromatic Midas cichlids Frederico Henning, Julia C Jones, Paolo Franchini, Axel Meyer BMC Genomics 2013, 14:171 (13 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Characterization of expressed sequence tags from developing fibers of Gossypium barbadense and evaluation of insertion-deletion variation in tetraploid cultivated cotton species Yuanda Lv, Liang Zhao, Xiaoyang Xu, Lei Wang, Cheng Wang, Tianzhen Zhang, Wangzhen Guo BMC Genomics 2013, 14:170 (13 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome analysis of pigeon milk production – role of cornification and triglyceride synthesis genes Meagan J Gillespie, Tamsyn M Crowley, Volker R Haring, Susanne L Wilson, Jennifer A Harper, Jean S Payne, Diane Green, Paul Monaghan, John A Donald, Kevin R Nicholas, Robert J Moore BMC Genomics 2013, 14:169 (13 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article De-novo assembly and characterization of the transcriptome of Metschnikowia fructicola reveals differences in gene expression following interaction with Penicillium digitatum and grapefruit peel Vera Hershkovitz, Noa Sela, Leena Taha-Salaime, Jia Liu, Ginat Rafael, Clarita Kessler, Radi Aly, Maggie Levy, Michael Wisniewski, Samir Droby BMC Genomics 2013, 14:168 (12 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly Warren R Francis, Lynne M Christianson, Rainer Kiko, Meghan L Powers, Nathan C Shaner, Steven H D Haddock BMC Genomics 2013, 14:167 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative analysis of protein-protein interactions in the defense response of rice and wheat Dario Cantu, Baoju Yang, Randy Ruan, Kun Li, Virginia Menzo, Daolin Fu, Mawsheng Chern, Pamela C Ronald, Jorge Dubcovsky BMC Genomics 2013, 14:166 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing Xiang Jiao, Sean D Hooper, Tatjana Djureinovic, Chatarina Larsson, Fredrik Wärnberg, Christian Tellgren-Roth, Johan Botling, Tobias Sjöblom BMC Genomics 2013, 14:165 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans Yuru Zhang, Xiaoju Zou, Yihong Ding, Haizhen Wang, Xiaoyun Wu, Bin Liang BMC Genomics 2013, 14:164 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article DNA damage activates a complex transcriptional response in murine lymphocytes that includes both physiological and cancer-predisposition programs Cynthia L Innes, Jill E Hesse, Stela S Palii, Beth A Helmink, Abigail J Holub, Barry P Sleckman, Richard S Paules BMC Genomics 2013, 14:163 (12 March 2013) Abstract \| Full text \| PDF \| PubMed