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		Research article Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements Yu Zhang, Shikai Liu, Jianguo Lu, Yanliang Jiang, Xiaoyu Gao, Parichart Ninwichian, Chao Li, Geoff Waldbieser, Zhanjiang Liu BMC Genomics 2013, 14:387 (10 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article ATR-FTIR spectroscopy reveals genomic loci regulating the tissue response in high fat diet fed BXD recombinant inbred mouse strains Ayca Dogan, Peter Lasch, Christina Neuschl, Marion K Millrose, Rudi Alberts, Klaus Schughart, Dieter Naumann, Gudrun A Brockmann BMC Genomics 2013, 14:386 (10 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article Evolution of REP diversity: a comparative study Jaroslav Nunvar, Irena Licha, Bohdan Schneider BMC Genomics 2013, 14:385 (10 June 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges Hanno Schmidt, Bastian Greshake, Barbara Feldmeyer, Thomas Hankeln, Markus Pfenninger BMC Genomics 2013, 14:384 (10 June 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells Sheila Z Kimaro Mlacha, Sandra Romero-Steiner, Julie C Dunning Hotopp, Nikhil Kumar, Nadeeza Ishmael, David R Riley, Umar Farooq, Todd H Creasy, Luke J Tallon, Xinyue Liu, Cynthia S Goldsmith, Jacquelyn Sampson, George M Carlone, Susan K Hollingshead, J Anthony Scott, Hervé Tettelin BMC Genomics 2013, 14:383 (9 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article Detection of selective sweeps in cattle using genome-wide SNP data Holly R Ramey, Jared E Decker, Stephanie D McKay, Megan M Rolf, Robert D Schnabel, Jeremy F Taylor BMC Genomics 2013, 14:382 (7 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Expression profiling of genes regulated by Fra-1/AP-1 transcription factor during bleomycin-induced pulmonary fibrosis Subbiah Rajasekaran, Narsa M Reddy, Wei Zhang, Sekhar P Reddy BMC Genomics 2013, 14:381 (7 June 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome based identification of mouse cumulus cell markers that predict the developmental competence of their enclosed antral oocytes Giulia Vigone, Valeria Merico, Alessandro Prigione, Francesca Mulas, Lucia Sacchi, Matteo Gabetta, Riccardo Bellazzi, Carlo Redi, Giuliano Mazzini, James Adjaye, Silvia Garagna, Maurizio Zuccotti BMC Genomics 2013, 14:380 (7 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Alternative splicing tends to avoid partial removals of protein-protein interaction sites Alessio Colantoni, Valerio Bianchi, Pier Federico Gherardini, Gianpaolo Scalia Tomba, Gabriele Ausiello, Manuela Helmer-Citterich, Fabrizio Ferrè BMC Genomics 2013, 14:379 (7 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection Sheila Z Kimaro Mlacha, Teresa C T Peret, Nikhil Kumar, Sandra Romero-Steiner, Julie C Dunning Hotopp, Nadeeza Ishmael, Valerie Grinblat-Huse, David R Riley, Dean D Erdman, George M Carlone, Jacquelyn Sampson, J Anthony G Scott, Hervé Tettelin BMC Genomics 2013, 14:378 (7 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Insight into the specific virulence related genes and toxin-antitoxin virulent pathogenicity islands in swine streptococcosis pathogen Streptococcus equi ssp. zooepidemicus strain ATCC35246 Zhe Ma, Jianing Geng, Li Yi, Bin Xu, Ruoyu Jia, Yue Li, Qingshu Meng, Hongjie Fan, Songnian Hu BMC Genomics 2013, 14:377 (7 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article Time-dependent changes in gene expression induced by secreted amyloid precursor protein-alpha in the rat hippocampus Margaret M Ryan, Gary P Morris, Bruce G Mockett, Katie Bourne, Wickliffe C Abraham, Warren P Tate, Joanna M Williams BMC Genomics 2013, 14:376 (6 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species Steve Smith, Louis Bernatchez, Luciano B Beheregaray BMC Genomics 2013, 14:375 (5 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Drosophila GAGA factor polyglutamine domains exhibit prion-like behavior Muhammad Tariq, Renee Wegrzyn, Saima Anwar, Bernd Bukau, Renato Paro BMC Genomics 2013, 14:374 (3 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera Sajeet Haridas, Ye Wang, Lynette Lim, Sepideh Massoumi Alamouti, Shaun Jackman, Rod Docking, Gordon Robertson, Inanc Birol, Jörg Bohlmann, Colette Breuil BMC Genomics 2013, 14:373 (2 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Distinct transcriptome profiles identified in normal human bronchial epithelial cells after exposure to γ-rays and different elemental particles of high Z and energy Liang-Hao Ding, Seongmi Park, Michael Peyton, Luc Girard, Yang Xie, John D Minna, Michael D Story BMC Genomics 2013, 14:372 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor Franc Llorens, Manuela Hummel, Lorena Pantano, Xavier Pastor, Ana Vivancos, Ester Castillo, Heidi Mattlin, Anna Ferrer, Matthew Ingham, Marc Noguera, Robert Kofler, Juliane C Dohm, Raquel Pluvinet, Mònica Bayés, Heinz Himmelbauer, José del Rio, Eulàlia Martí, Lauro Sumoy BMC Genomics 2013, 14:371 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article A new genomic tool, ultra-frequently cleaving TaqII/sinefungin endonuclease with a combined 2.9-bp recognition site, applied to the construction of horse DNA libraries Agnieszka Zylicz-Stachula, Olga Zolnierkiewicz, Jacek Jasiecki, Piotr M Skowron BMC Genomics 2013, 14:370 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genetic association of OPR genes with resistance to Hessian fly in hexaploid wheat Chor Tan, Brett F Carver, Ming-Shun Chen, Yong-Qiang Gu, Liuling Yan BMC Genomics 2013, 14:369 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The genomic architecture and association genetics of adaptive characters using a candidate SNP approach in boreal black spruce Julien Prunier, Betty Pelgas, France Gagnon, Mireille Desponts, Nathalie Isabel, Jean Beaulieu, Jean Bousquet BMC Genomics 2013, 14:368 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method Joseph D Baugher, Benjamin D Baugher, Matthew D Shirley, Jonathan Pevsner BMC Genomics 2013, 14:367 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation Christopher J Grim, Michael L Kotewicz, Karen A Power, Gopal Gopinath, Augusto A Franco, Karen G Jarvis, Qiong Q Yan, Scott A Jackson, Venugopal Sathyamoorthy, Lan Hu, Franco Pagotto, Carol Iversen, Angelika Lehner, Roger Stephan, Séamus Fanning, Ben D Tall BMC Genomics 2013, 14:366 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK Matthew R Hayward, Vincent AA Jansen, Martin J Woodward BMC Genomics 2013, 14:365 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Actinobacillus pleuropneumoniae genes expression in biofilms cultured under static conditions and in a drip-flow apparatus Yannick DN Tremblay, Vincent Deslandes, Mario Jacques BMC Genomics 2013, 14:364 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild Javier Prado-Martinez, Irene Hernando-Herraez, Belen Lorente-Galdos, Marc Dabad, Oscar Ramirez, Carlos Baeza-Delgado, Carlos Morcillo-Suarez, Can Alkan, Fereydoun Hormozdiari, Emanuele Raineri, Jordi Estellé, Marcos Fernandez-Callejo, Mònica Valles, Lars Ritscher, Torsten Schöneberg, Elisa de la Calle-Mustienes, Sònia Casillas, Raquel Rubio-Acero, Marta Melé, Johannes Engelken, Mario Caceres, Jose Gomez-Skarmeta, Marta Gut, Jaume Bertranpetit, Ivo G Gut, Teresa Abello, Evan E Eichler, Ismael Mingarro, Carles Lalueza-Fox, Arcadi Navarro, Tomas Marques-Bonet et al. BMC Genomics 2013, 14:363 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed \| Editor’s summary A phenotypically unique gorilla carries a private non-synonymous substitution in a transmembrane domain in SLC45A2, one of the candidate genes associated with the OCA4 class of albinism

	All
		Research article Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements Yu Zhang, Shikai Liu, Jianguo Lu, Yanliang Jiang, Xiaoyu Gao, Parichart Ninwichian, Chao Li, Geoff Waldbieser, Zhanjiang Liu BMC Genomics 2013, 14:387 (10 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article ATR-FTIR spectroscopy reveals genomic loci regulating the tissue response in high fat diet fed BXD recombinant inbred mouse strains Ayca Dogan, Peter Lasch, Christina Neuschl, Marion K Millrose, Rudi Alberts, Klaus Schughart, Dieter Naumann, Gudrun A Brockmann BMC Genomics 2013, 14:386 (10 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article Evolution of REP diversity: a comparative study Jaroslav Nunvar, Irena Licha, Bohdan Schneider BMC Genomics 2013, 14:385 (10 June 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges Hanno Schmidt, Bastian Greshake, Barbara Feldmeyer, Thomas Hankeln, Markus Pfenninger BMC Genomics 2013, 14:384 (10 June 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells Sheila Z Kimaro Mlacha, Sandra Romero-Steiner, Julie C Dunning Hotopp, Nikhil Kumar, Nadeeza Ishmael, David R Riley, Umar Farooq, Todd H Creasy, Luke J Tallon, Xinyue Liu, Cynthia S Goldsmith, Jacquelyn Sampson, George M Carlone, Susan K Hollingshead, J Anthony Scott, Hervé Tettelin BMC Genomics 2013, 14:383 (9 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article Detection of selective sweeps in cattle using genome-wide SNP data Holly R Ramey, Jared E Decker, Stephanie D McKay, Megan M Rolf, Robert D Schnabel, Jeremy F Taylor BMC Genomics 2013, 14:382 (7 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Expression profiling of genes regulated by Fra-1/AP-1 transcription factor during bleomycin-induced pulmonary fibrosis Subbiah Rajasekaran, Narsa M Reddy, Wei Zhang, Sekhar P Reddy BMC Genomics 2013, 14:381 (7 June 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome based identification of mouse cumulus cell markers that predict the developmental competence of their enclosed antral oocytes Giulia Vigone, Valeria Merico, Alessandro Prigione, Francesca Mulas, Lucia Sacchi, Matteo Gabetta, Riccardo Bellazzi, Carlo Redi, Giuliano Mazzini, James Adjaye, Silvia Garagna, Maurizio Zuccotti BMC Genomics 2013, 14:380 (7 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Alternative splicing tends to avoid partial removals of protein-protein interaction sites Alessio Colantoni, Valerio Bianchi, Pier Federico Gherardini, Gianpaolo Scalia Tomba, Gabriele Ausiello, Manuela Helmer-Citterich, Fabrizio Ferrè BMC Genomics 2013, 14:379 (7 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection Sheila Z Kimaro Mlacha, Teresa C T Peret, Nikhil Kumar, Sandra Romero-Steiner, Julie C Dunning Hotopp, Nadeeza Ishmael, Valerie Grinblat-Huse, David R Riley, Dean D Erdman, George M Carlone, Jacquelyn Sampson, J Anthony G Scott, Hervé Tettelin BMC Genomics 2013, 14:378 (7 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Insight into the specific virulence related genes and toxin-antitoxin virulent pathogenicity islands in swine streptococcosis pathogen Streptococcus equi ssp. zooepidemicus strain ATCC35246 Zhe Ma, Jianing Geng, Li Yi, Bin Xu, Ruoyu Jia, Yue Li, Qingshu Meng, Hongjie Fan, Songnian Hu BMC Genomics 2013, 14:377 (7 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article Time-dependent changes in gene expression induced by secreted amyloid precursor protein-alpha in the rat hippocampus Margaret M Ryan, Gary P Morris, Bruce G Mockett, Katie Bourne, Wickliffe C Abraham, Warren P Tate, Joanna M Williams BMC Genomics 2013, 14:376 (6 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species Steve Smith, Louis Bernatchez, Luciano B Beheregaray BMC Genomics 2013, 14:375 (5 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Drosophila GAGA factor polyglutamine domains exhibit prion-like behavior Muhammad Tariq, Renee Wegrzyn, Saima Anwar, Bernd Bukau, Renato Paro BMC Genomics 2013, 14:374 (3 June 2013) Abstract \| Provisional PDF \| PubMed
		Research article The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera Sajeet Haridas, Ye Wang, Lynette Lim, Sepideh Massoumi Alamouti, Shaun Jackman, Rod Docking, Gordon Robertson, Inanc Birol, Jörg Bohlmann, Colette Breuil BMC Genomics 2013, 14:373 (2 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Distinct transcriptome profiles identified in normal human bronchial epithelial cells after exposure to γ-rays and different elemental particles of high Z and energy Liang-Hao Ding, Seongmi Park, Michael Peyton, Luc Girard, Yang Xie, John D Minna, Michael D Story BMC Genomics 2013, 14:372 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor Franc Llorens, Manuela Hummel, Lorena Pantano, Xavier Pastor, Ana Vivancos, Ester Castillo, Heidi Mattlin, Anna Ferrer, Matthew Ingham, Marc Noguera, Robert Kofler, Juliane C Dohm, Raquel Pluvinet, Mònica Bayés, Heinz Himmelbauer, José del Rio, Eulàlia Martí, Lauro Sumoy BMC Genomics 2013, 14:371 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article A new genomic tool, ultra-frequently cleaving TaqII/sinefungin endonuclease with a combined 2.9-bp recognition site, applied to the construction of horse DNA libraries Agnieszka Zylicz-Stachula, Olga Zolnierkiewicz, Jacek Jasiecki, Piotr M Skowron BMC Genomics 2013, 14:370 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genetic association of OPR genes with resistance to Hessian fly in hexaploid wheat Chor Tan, Brett F Carver, Ming-Shun Chen, Yong-Qiang Gu, Liuling Yan BMC Genomics 2013, 14:369 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The genomic architecture and association genetics of adaptive characters using a candidate SNP approach in boreal black spruce Julien Prunier, Betty Pelgas, France Gagnon, Mireille Desponts, Nathalie Isabel, Jean Beaulieu, Jean Bousquet BMC Genomics 2013, 14:368 (1 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method Joseph D Baugher, Benjamin D Baugher, Matthew D Shirley, Jonathan Pevsner BMC Genomics 2013, 14:367 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation Christopher J Grim, Michael L Kotewicz, Karen A Power, Gopal Gopinath, Augusto A Franco, Karen G Jarvis, Qiong Q Yan, Scott A Jackson, Venugopal Sathyamoorthy, Lan Hu, Franco Pagotto, Carol Iversen, Angelika Lehner, Roger Stephan, Séamus Fanning, Ben D Tall BMC Genomics 2013, 14:366 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK Matthew R Hayward, Vincent AA Jansen, Martin J Woodward BMC Genomics 2013, 14:365 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Actinobacillus pleuropneumoniae genes expression in biofilms cultured under static conditions and in a drip-flow apparatus Yannick DN Tremblay, Vincent Deslandes, Mario Jacques BMC Genomics 2013, 14:364 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild Javier Prado-Martinez, Irene Hernando-Herraez, Belen Lorente-Galdos, Marc Dabad, Oscar Ramirez, Carlos Baeza-Delgado, Carlos Morcillo-Suarez, Can Alkan, Fereydoun Hormozdiari, Emanuele Raineri, Jordi Estellé, Marcos Fernandez-Callejo, Mònica Valles, Lars Ritscher, Torsten Schöneberg, Elisa de la Calle-Mustienes, Sònia Casillas, Raquel Rubio-Acero, Marta Melé, Johannes Engelken, Mario Caceres, Jose Gomez-Skarmeta, Marta Gut, Jaume Bertranpetit, Ivo G Gut, Teresa Abello, Evan E Eichler, Ismael Mingarro, Carles Lalueza-Fox, Arcadi Navarro, Tomas Marques-Bonet et al. BMC Genomics 2013, 14:363 (31 May 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed \| Editor’s summary A phenotypically unique gorilla carries a private non-synonymous substitution in a transmembrane domain in SLC45A2, one of the candidate genes associated with the OCA4 class of albinism