BMC Genomics | All articles

Submit a manuscript Register Contact us Follow us on Twitter

Explore BMC Genomics

Advertisement

Articles

Supplements

Display/download options Articles per page: 25 | 50 | 100

Display options

Editor's summary Citation

Download options

Send
To

	All
		Research article Genome wide identification of chilling responsive microRNAs in Prunus persica Abdelali Barakat, Aditya Sriram, Joseph Park, Tetyana Zhebentyayeva, Dorrie Main, Albert Abbott BMC Genomics 2012, 13:481 (15 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide association between DNA methylation and alternative splicing in an invertebrate Kevin Flores, Florian Wolschin, Jason J Corneveaux, April N Allen, Matthew J Huentelman, Gro V Amdam BMC Genomics 2012, 13:480 (15 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome sequencing and genetic breeding of a bioethanol Saccharomyces cerevisiae strain YJS329 Dao-Qiong Zheng, Pin-Mei Wang, Jie Chen, Ke Zhang, Tian-Zhe Liu, Xue-Chang Wu, Yu-Dong Li, Yu-Hua Zhao BMC Genomics 2012, 13:479 (15 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Diversity and evolution of multiple orc/cdc6-adjacent replication origins in haloarchaea Zhenfang Wu, Hailong Liu, Jingfang Liu, Xiaoqing Liu, Hua Xiang BMC Genomics 2012, 13:478 (14 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article In depth comparison of an individual’s DNA and its lymphoblastoid cell line using whole genome sequencing Dorothee Nickles, Lohith Madireddy, Shan Yang, Pouya Khankhanian, Steve Lincoln, Stephen L Hauser, Jorge R Oksenberg, Sergio E Baranzini BMC Genomics 2012, 13:477 (14 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains Michael J Parsons, Christina Grimm, Jose L Paya-Cano, Cathy Fernandes, Lin Liu, Vivek M Philip, Elissa J Chesler, Wilfried Nietfeld, Hans Lehrach, Leonard C Schalkwyk BMC Genomics 2012, 13:476 (13 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article De novo assembly of highly diverse viral populations Xiao Yang, Patrick Charlebois, Sante Gnerre, Matthew G Coole, Niall J Lennon, Joshua Z Levin, James Qu, Elizabeth M Ryan, Michael C Zody, Matthew R Henn BMC Genomics 2012, 13:475 (13 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article RNA-Seq reveals complex genetic response to deepwater horizon oil release in Fundulus grandis Tzintzuni I Garcia, Yingjia Shen, Douglas Crawford, Marjorie F Oleksiak, Andrew Whitehead, Ronald B Walter BMC Genomics 2012, 13:474 (12 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq Kyung-Do Park, Jongsun Park, Junsu Ko, Byung Kim, Heui-Soo Kim, Kung Ahn, Kyoung-Tag Do, Hansol Choi, Hak-Min Kim, Sanghoon Song, Sunghoon Lee, Sungwoong Jho, Hong-Sik Kong, Young Yang, Byung-Hak Jhun, Chulhong Kim, Tae-Hyung Kim, Seungwoo Hwang, Jong Bhak, Hak-Kyo Lee, Byung-Wook Cho BMC Genomics 2012, 13:473 (12 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome classification reveals molecular subtypes in psoriasis Chrysanthi Ainali, Najl Valeyev, Gayathri Perera, Andrew Williams, Johann E Gudjonsson, Christos A Ouzounis, Frank O Nestle, Sophia Tsoka BMC Genomics 2012, 13:472 (12 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production Jessica E Butler, Nelson D Young, Muktak Aklujkar, Derek R Lovley BMC Genomics 2012, 13:471 (12 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Dietary vegetable oils do not alter the intestine transcriptome of gilthead sea bream (Sparus aurata), but modulate the transcriptomic response to infection with Enteromyxum leei Josep A Calduch-Giner, Ariadna Sitjà-Bobadilla, Grace C Davey, Michael T Cairns, Sadasivam Kaushik, Jaume Pérez-Sánchez BMC Genomics 2012, 13:470 (11 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut Ervin D Nagy, Yufang Guo, Shunxue Tang, John E Bowers, Rebecca A Okashah, Christopher A Taylor, Dong Zhang, Sameer Khanal, Adam F Heesacker, Nelly Khalilian, Andrew D Farmer, Noelia Carrasquilla-Garcia, R Varma Penmetsa, Douglas Cook, H Thomas Stalker, Niels Nielsen, Peggy Ozias-Akins, Steven J Knapp BMC Genomics 2012, 13:469 (11 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic Rachel Sealfon, Stephen Gire, Crystal Ellis, Stephen Calderwood, Firdausi Qadri, Lisa Hensley, Manolis Kellis, Edward T Ryan, Regina C LaRocque, Jason B Harris, Pardis C Sabeti BMC Genomics 2012, 13:468 (11 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Tracing genomic variations in two highly virulent Yersinia enterocolitica strains with unequal ability to compete for host colonization Debora Garzetti, Hicham Bouabe, Juergen Heesemann, Alexander Rakin BMC Genomics 2012, 13:467 (11 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena) Hsiao-Pei Lu, Yu-bin Wang, Shiao-Wei Huang, Chung-Yen Lin, Martin Wu, Chih-hao Hsieh, Hon-Tsen Yu BMC Genomics 2012, 13:466 (10 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Complete genome sequence of Saccharothrix espanaensis DSM 44229^T and comparison to the other completely sequenced Pseudonocardiaceae Tina Strobel, Arwa Al-Dilaimi, Jochen Blom, Arne Gessner, Jörn Kalinowski, Marta Luzhetska, Alfred Pühler, Rafael Szczepanowski, Andreas Bechthold, Christian Rückert BMC Genomics 2012, 13:465 (9 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica Neeraja M Krishnan, Swetansu Pattnaik, Prachi Jain, Prakhar Gaur, Rakshit Choudhary, Srividya Vaidyanathan, Sa Deepak, Arun K Hariharan, PG Krishna, Jayalakshmi Nair, Linu Varghese, Naveen K Valivarthi, Kunal Dhas, Krishna Ramaswamy, Binay Panda BMC Genomics 2012, 13:464 (9 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish Juliana Mazzuchelli, Thomas Kocher, Fengtang Yang, Cesar Martins BMC Genomics 2012, 13:463 (9 September 2012) Abstract \| Full text \| PDF \| PubMed
		Software NG6: Integrated next generation sequencing storage and processing environment Jérôme Mariette, Frédéric Escudié, Nicolas Allias, Gérald Salin, Céline Noirot, Sylvain Thomas, Christophe Klopp BMC Genomics 2012, 13:462 (9 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background Fan Zhang, Liyu Huang, Wensheng Wang, Xiuqin Zhao, Linghua Zhu, Binying Fu, Zhikang Li BMC Genomics 2012, 13:461 (7 September 2012) Abstract \| Full text \| PDF \| PubMed
		Software CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data Jason E Shoemaker, Tiago JS Lopes, Samik Ghosh, Yukiko Matsuoka, Yoshihiro Kawaoka, Hiroaki Kitano BMC Genomics 2012, 13:460 (6 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae Agnieszka Podolska, Christian Anthon, Mads Bak, Niels Tommerup, Kerstin Skovgaard, Peter MH Heegaard, Jan Gorodkin, Susanna Cirera, Merete Fredholm BMC Genomics 2012, 13:459 (6 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Common inversion polymorphism at 17q21.31 affects expression of multiple genes in tissue-specific manner Simone de Jong, Iouri Chepelev, Esther Janson, Eric Strengman, Leonard H van den Berg, Jan H Veldink, Roel A Ophoff BMC Genomics 2012, 13:458 (6 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptomic profiling of proteases and antiproteases in the liver of sexually mature hens in relation to vitellogenesis Marie Bourin, Joël Gautron, Magali Berges, Christelle Hennequet-Antier, Cédric Cabau, Yves Nys, Sophie Réhault-Godbert BMC Genomics 2012, 13:457 (5 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Inferring genetic architecture of complex traits using Bayesian integrative analysis of genome and transcriptome data Alireza Ehsani, Peter Sørensen, Daniel Pomp, Mark Allan, Luc Janss BMC Genomics 2012, 13:456 (5 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article A mechanistic basis for amplification differences between samples and between genome regions Colin D Veal, Peter J Freeman, Kevin Jacobs, Owen Lancaster, Stéphane Jamain, Marion Leboyer, Demetrius Albanes, Reshma R Vaghela, Ivo Gut, Stephen J Chanock, Anthony J Brookes BMC Genomics 2012, 13:455 (5 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity Luke J Mappley, Michael L Black, Manal AbuOun, Alistair C Darby, Martin J Woodward, Julian Parkhill, A Turner, Matthew I Bellgard, Tom La, Nyree D Phillips, Roberto M La Ragione, David J Hampson BMC Genomics 2012, 13:454 (5 September 2012) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Microarray analysis revealing common and distinct functions of promyelocytic leukemia protein (PML) and tumor necrosis factor alpha (TNFα) signaling in endothelial cells Xiwen Cheng, Hung-Ying Kao BMC Genomics 2012, 13:453 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines Christian Riedelsheimer, Frank Technow, Albrecht E Melchinger BMC Genomics 2012, 13:452 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Using BAC transgenesis in zebrafish to identify regulatory sequences of the amyloid precursor protein gene in humans Leighcraft A Shakes, Hansen Du, Hope M Wolf, Charles Hatcher, Derek C Norford, Patricia Precht, Ranjan Sen, Pradeep K Chatterjee BMC Genomics 2012, 13:451 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Time-course microarrays reveal early activation of the immune transcriptome and adipokine dysregulation leads to fibrosis in visceral adipose depots during diet-induced obesity Eun-Young Kwon, Su-Kyung Shin, Yun-Young Cho, Un Jung, Eunjung Kim, Taesun Park, Jung Han Park, Jong Yun, Robin A McGregor, Yong Park, Myung-Sook Choi BMC Genomics 2012, 13:450 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Serpins in rice: protein sequence analysis, phylogeny and gene expression during development Sheila E Francis, Renan A Ersoy, Joon-Woo Ahn, Brian J Atwell, Thomas H Roberts BMC Genomics 2012, 13:449 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Effects of genotype and dietary fish oil replacement with vegetable oil on the intestinal transcriptome and proteome of Atlantic salmon (Salmo salar) Sofia Morais, Tomé Silva, Odete Cordeiro, Pedro Rodrigues, Derrick R Guy, James E Bron, John B Taggart, J Gordon Bell, Douglas R Tocher BMC Genomics 2012, 13:448 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genetic module and miRNome trait analyses reflect the distinct biological features of endothelial progenitor cells from different anatomic locations Cheng-Chung Cheng, Hung-Hao Lo, Tse-Shun Huang, Yi-Chieh Cheng, Shi-Ting Chang, Shing-Jyh Chang, Hsei-Wei Wang BMC Genomics 2012, 13:447 (3 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Evolution of selenoproteins in the metazoan Liang Jiang, Jiazuan Ni, Qiong Liu BMC Genomics 2012, 13:446 (3 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicum Tobias Busche, Radoslav Šilar, Martina Pičmanová, Miroslav Pátek, Jörn Kalinowski BMC Genomics 2012, 13:445 (3 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize Hitoshi Suzuki, Jacqueline MacDonald, Khajamohiddin Syed, Asaf Salamov, Chiaki Hori, Andrea Aerts, Bernard Henrissat, Ad Wiebenga, Patricia A vanKuyk, Kerrie Barry, Erika Lindquist, Kurt LaButti, Alla Lapidus, Susan Lucas, Pedro Coutinho, Yunchen Gong, Masahiro Samejima, Radhakrishnan Mahadevan, Mamdouh Abou-Zaid, Ronald P de Vries, Kiyohiko Igarashi, Jagjit S Yadav, Igor V Grigoriev, Emma R Master BMC Genomics 2012, 13:444 (2 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Maternal 3’UTRs: from egg to onset of zygotic transcription in Atlantic cod Lene Kleppe, Rolf B Edvardsen, Heiner Kuhl, Ketil Malde, Tomasz Furmanek, Øyvind Drivenes, Richard Reinhardt, Geir L Taranger, Anna Wargelius BMC Genomics 2012, 13:443 (1 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article The lavender plumage colour in Japanese quail is associated with a complex mutation in the region of MLPH that is related to differences in growth, feed consumption and body temperature Bertrand Bed’hom, Mohsen Vaez, Jean-Luc Coville, David Gourichon, Olivier Chastel, Sarah Follett, Terry Burke, Francis Minvielle BMC Genomics 2012, 13:442 (31 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptomic and metabolomic profiling of chicken adipose tissue in response to insulin neutralization and fasting Bo Ji, Ben Ernest, Jessica R Gooding, Suchita Das, Arnold M Saxton, Jean Simon, Joelle Dupont, Sonia Métayer-Coustard, Shawn R Campagna, Brynn H Voy BMC Genomics 2012, 13:441 (31 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Sequencing and analysis of a South Asian-Indian personal genome Ravi Gupta, Aakrosh Ratan, Changanamkandath Rajesh, Rong Chen, Hie Lim Kim, Richard Burhans, Webb Miller, Sam Santhosh, Ramana V Davuluri, Atul J Butte, Stephan C Schuster, Somasekar Seshagiri, George Thomas BMC Genomics 2012, 13:440 (31 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus) Hilary C Miller, Patrick J Biggs, Claudia Voelckel, Nicola J Nelson BMC Genomics 2012, 13:439 (31 August 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Transcriptomic analysis of an early stage embryo of Tuatara (Sphenodon punctatus), the only surviving member of one of the earliest-diverging reptile lineages, will facilitate annotation of its genome and provide a useful resource for studying amniote evolution.
		Research article Exploration of the core metabolism of symbiotic bacteria Cecilia Coimbra Klein, Ludovic Cottret, Janice Kielbassa, Hubert Charles, Christian Gautier, Ana Tereza Ribeiro de Vasconcelos, Vincent Lacroix, Marie-France Sagot BMC Genomics 2012, 13:438 (31 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells Mingzhu Zhu, Xin Deng, Trupti Joshi, Dong Xu, Gary Stacey, Jianlin Cheng BMC Genomics 2012, 13:437 (31 August 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Normalization of a chromosomal contact map Axel Cournac, Hervé Marie-Nelly, Martial Marbouty, Romain Koszul, Julien Mozziconacci BMC Genomics 2012, 13:436 (30 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Coevolution between simple sequence repeats (SSRs) and virus genome size Xiangyan Zhao, Yonglei Tian, Ronghua Yang, Haiping Feng, Qingjian Ouyang, You Tian, Zhongyang Tan, Mingfu Li, Yile Niu, Jianhui Jiang, Guoli Shen, Ruqin Yu BMC Genomics 2012, 13:435 (30 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome profiling in conifers and the PiceaGenExpress database show patterns of diversification within gene families and interspecific conservation in vascular gene expression Elie Raherison, Philippe Rigault, Sébastien Caron, Pier-Luc Poulin, Brian Boyle, Jukka-Pekka Verta, Isabelle Giguère, Claude Bomal, Jörg Bohlmann, John MacKay BMC Genomics 2012, 13:434 (29 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Regulatory elements of Caenorhabditis elegans ribosomal protein genes Monica C Sleumer, Guifeng Wei, Yunfei Wang, Hao Chang, Tao Xu, Runsheng Chen, Michael Q Zhang BMC Genomics 2012, 13:433 (28 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis Silje Brenna-Hansen, Jieying Li, Matthew P Kent, Elizabeth G Boulding, Sonja Dominik, William S Davidson, Sigbjørn Lien BMC Genomics 2012, 13:432 (28 August 2012) Abstract \| Full text \| PDF \| PubMed

	All
		Research article Genome wide identification of chilling responsive microRNAs in Prunus persica Abdelali Barakat, Aditya Sriram, Joseph Park, Tetyana Zhebentyayeva, Dorrie Main, Albert Abbott BMC Genomics 2012, 13:481 (15 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide association between DNA methylation and alternative splicing in an invertebrate Kevin Flores, Florian Wolschin, Jason J Corneveaux, April N Allen, Matthew J Huentelman, Gro V Amdam BMC Genomics 2012, 13:480 (15 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome sequencing and genetic breeding of a bioethanol Saccharomyces cerevisiae strain YJS329 Dao-Qiong Zheng, Pin-Mei Wang, Jie Chen, Ke Zhang, Tian-Zhe Liu, Xue-Chang Wu, Yu-Dong Li, Yu-Hua Zhao BMC Genomics 2012, 13:479 (15 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Diversity and evolution of multiple orc/cdc6-adjacent replication origins in haloarchaea Zhenfang Wu, Hailong Liu, Jingfang Liu, Xiaoqing Liu, Hua Xiang BMC Genomics 2012, 13:478 (14 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article In depth comparison of an individual’s DNA and its lymphoblastoid cell line using whole genome sequencing Dorothee Nickles, Lohith Madireddy, Shan Yang, Pouya Khankhanian, Steve Lincoln, Stephen L Hauser, Jorge R Oksenberg, Sergio E Baranzini BMC Genomics 2012, 13:477 (14 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains Michael J Parsons, Christina Grimm, Jose L Paya-Cano, Cathy Fernandes, Lin Liu, Vivek M Philip, Elissa J Chesler, Wilfried Nietfeld, Hans Lehrach, Leonard C Schalkwyk BMC Genomics 2012, 13:476 (13 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article De novo assembly of highly diverse viral populations Xiao Yang, Patrick Charlebois, Sante Gnerre, Matthew G Coole, Niall J Lennon, Joshua Z Levin, James Qu, Elizabeth M Ryan, Michael C Zody, Matthew R Henn BMC Genomics 2012, 13:475 (13 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article RNA-Seq reveals complex genetic response to deepwater horizon oil release in Fundulus grandis Tzintzuni I Garcia, Yingjia Shen, Douglas Crawford, Marjorie F Oleksiak, Andrew Whitehead, Ronald B Walter BMC Genomics 2012, 13:474 (12 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq Kyung-Do Park, Jongsun Park, Junsu Ko, Byung Kim, Heui-Soo Kim, Kung Ahn, Kyoung-Tag Do, Hansol Choi, Hak-Min Kim, Sanghoon Song, Sunghoon Lee, Sungwoong Jho, Hong-Sik Kong, Young Yang, Byung-Hak Jhun, Chulhong Kim, Tae-Hyung Kim, Seungwoo Hwang, Jong Bhak, Hak-Kyo Lee, Byung-Wook Cho BMC Genomics 2012, 13:473 (12 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome classification reveals molecular subtypes in psoriasis Chrysanthi Ainali, Najl Valeyev, Gayathri Perera, Andrew Williams, Johann E Gudjonsson, Christos A Ouzounis, Frank O Nestle, Sophia Tsoka BMC Genomics 2012, 13:472 (12 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production Jessica E Butler, Nelson D Young, Muktak Aklujkar, Derek R Lovley BMC Genomics 2012, 13:471 (12 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Dietary vegetable oils do not alter the intestine transcriptome of gilthead sea bream (Sparus aurata), but modulate the transcriptomic response to infection with Enteromyxum leei Josep A Calduch-Giner, Ariadna Sitjà-Bobadilla, Grace C Davey, Michael T Cairns, Sadasivam Kaushik, Jaume Pérez-Sánchez BMC Genomics 2012, 13:470 (11 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut Ervin D Nagy, Yufang Guo, Shunxue Tang, John E Bowers, Rebecca A Okashah, Christopher A Taylor, Dong Zhang, Sameer Khanal, Adam F Heesacker, Nelly Khalilian, Andrew D Farmer, Noelia Carrasquilla-Garcia, R Varma Penmetsa, Douglas Cook, H Thomas Stalker, Niels Nielsen, Peggy Ozias-Akins, Steven J Knapp BMC Genomics 2012, 13:469 (11 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic Rachel Sealfon, Stephen Gire, Crystal Ellis, Stephen Calderwood, Firdausi Qadri, Lisa Hensley, Manolis Kellis, Edward T Ryan, Regina C LaRocque, Jason B Harris, Pardis C Sabeti BMC Genomics 2012, 13:468 (11 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Tracing genomic variations in two highly virulent Yersinia enterocolitica strains with unequal ability to compete for host colonization Debora Garzetti, Hicham Bouabe, Juergen Heesemann, Alexander Rakin BMC Genomics 2012, 13:467 (11 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena) Hsiao-Pei Lu, Yu-bin Wang, Shiao-Wei Huang, Chung-Yen Lin, Martin Wu, Chih-hao Hsieh, Hon-Tsen Yu BMC Genomics 2012, 13:466 (10 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Complete genome sequence of Saccharothrix espanaensis DSM 44229^T and comparison to the other completely sequenced Pseudonocardiaceae Tina Strobel, Arwa Al-Dilaimi, Jochen Blom, Arne Gessner, Jörn Kalinowski, Marta Luzhetska, Alfred Pühler, Rafael Szczepanowski, Andreas Bechthold, Christian Rückert BMC Genomics 2012, 13:465 (9 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica Neeraja M Krishnan, Swetansu Pattnaik, Prachi Jain, Prakhar Gaur, Rakshit Choudhary, Srividya Vaidyanathan, Sa Deepak, Arun K Hariharan, PG Krishna, Jayalakshmi Nair, Linu Varghese, Naveen K Valivarthi, Kunal Dhas, Krishna Ramaswamy, Binay Panda BMC Genomics 2012, 13:464 (9 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish Juliana Mazzuchelli, Thomas Kocher, Fengtang Yang, Cesar Martins BMC Genomics 2012, 13:463 (9 September 2012) Abstract \| Full text \| PDF \| PubMed
		Software NG6: Integrated next generation sequencing storage and processing environment Jérôme Mariette, Frédéric Escudié, Nicolas Allias, Gérald Salin, Céline Noirot, Sylvain Thomas, Christophe Klopp BMC Genomics 2012, 13:462 (9 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background Fan Zhang, Liyu Huang, Wensheng Wang, Xiuqin Zhao, Linghua Zhu, Binying Fu, Zhikang Li BMC Genomics 2012, 13:461 (7 September 2012) Abstract \| Full text \| PDF \| PubMed
		Software CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data Jason E Shoemaker, Tiago JS Lopes, Samik Ghosh, Yukiko Matsuoka, Yoshihiro Kawaoka, Hiroaki Kitano BMC Genomics 2012, 13:460 (6 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae Agnieszka Podolska, Christian Anthon, Mads Bak, Niels Tommerup, Kerstin Skovgaard, Peter MH Heegaard, Jan Gorodkin, Susanna Cirera, Merete Fredholm BMC Genomics 2012, 13:459 (6 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Common inversion polymorphism at 17q21.31 affects expression of multiple genes in tissue-specific manner Simone de Jong, Iouri Chepelev, Esther Janson, Eric Strengman, Leonard H van den Berg, Jan H Veldink, Roel A Ophoff BMC Genomics 2012, 13:458 (6 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptomic profiling of proteases and antiproteases in the liver of sexually mature hens in relation to vitellogenesis Marie Bourin, Joël Gautron, Magali Berges, Christelle Hennequet-Antier, Cédric Cabau, Yves Nys, Sophie Réhault-Godbert BMC Genomics 2012, 13:457 (5 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Inferring genetic architecture of complex traits using Bayesian integrative analysis of genome and transcriptome data Alireza Ehsani, Peter Sørensen, Daniel Pomp, Mark Allan, Luc Janss BMC Genomics 2012, 13:456 (5 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article A mechanistic basis for amplification differences between samples and between genome regions Colin D Veal, Peter J Freeman, Kevin Jacobs, Owen Lancaster, Stéphane Jamain, Marion Leboyer, Demetrius Albanes, Reshma R Vaghela, Ivo Gut, Stephen J Chanock, Anthony J Brookes BMC Genomics 2012, 13:455 (5 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity Luke J Mappley, Michael L Black, Manal AbuOun, Alistair C Darby, Martin J Woodward, Julian Parkhill, A Turner, Matthew I Bellgard, Tom La, Nyree D Phillips, Roberto M La Ragione, David J Hampson BMC Genomics 2012, 13:454 (5 September 2012) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Microarray analysis revealing common and distinct functions of promyelocytic leukemia protein (PML) and tumor necrosis factor alpha (TNFα) signaling in endothelial cells Xiwen Cheng, Hung-Ying Kao BMC Genomics 2012, 13:453 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines Christian Riedelsheimer, Frank Technow, Albrecht E Melchinger BMC Genomics 2012, 13:452 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Using BAC transgenesis in zebrafish to identify regulatory sequences of the amyloid precursor protein gene in humans Leighcraft A Shakes, Hansen Du, Hope M Wolf, Charles Hatcher, Derek C Norford, Patricia Precht, Ranjan Sen, Pradeep K Chatterjee BMC Genomics 2012, 13:451 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Time-course microarrays reveal early activation of the immune transcriptome and adipokine dysregulation leads to fibrosis in visceral adipose depots during diet-induced obesity Eun-Young Kwon, Su-Kyung Shin, Yun-Young Cho, Un Jung, Eunjung Kim, Taesun Park, Jung Han Park, Jong Yun, Robin A McGregor, Yong Park, Myung-Sook Choi BMC Genomics 2012, 13:450 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Serpins in rice: protein sequence analysis, phylogeny and gene expression during development Sheila E Francis, Renan A Ersoy, Joon-Woo Ahn, Brian J Atwell, Thomas H Roberts BMC Genomics 2012, 13:449 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Effects of genotype and dietary fish oil replacement with vegetable oil on the intestinal transcriptome and proteome of Atlantic salmon (Salmo salar) Sofia Morais, Tomé Silva, Odete Cordeiro, Pedro Rodrigues, Derrick R Guy, James E Bron, John B Taggart, J Gordon Bell, Douglas R Tocher BMC Genomics 2012, 13:448 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genetic module and miRNome trait analyses reflect the distinct biological features of endothelial progenitor cells from different anatomic locations Cheng-Chung Cheng, Hung-Hao Lo, Tse-Shun Huang, Yi-Chieh Cheng, Shi-Ting Chang, Shing-Jyh Chang, Hsei-Wei Wang BMC Genomics 2012, 13:447 (3 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Evolution of selenoproteins in the metazoan Liang Jiang, Jiazuan Ni, Qiong Liu BMC Genomics 2012, 13:446 (3 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicum Tobias Busche, Radoslav Šilar, Martina Pičmanová, Miroslav Pátek, Jörn Kalinowski BMC Genomics 2012, 13:445 (3 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize Hitoshi Suzuki, Jacqueline MacDonald, Khajamohiddin Syed, Asaf Salamov, Chiaki Hori, Andrea Aerts, Bernard Henrissat, Ad Wiebenga, Patricia A vanKuyk, Kerrie Barry, Erika Lindquist, Kurt LaButti, Alla Lapidus, Susan Lucas, Pedro Coutinho, Yunchen Gong, Masahiro Samejima, Radhakrishnan Mahadevan, Mamdouh Abou-Zaid, Ronald P de Vries, Kiyohiko Igarashi, Jagjit S Yadav, Igor V Grigoriev, Emma R Master BMC Genomics 2012, 13:444 (2 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Maternal 3’UTRs: from egg to onset of zygotic transcription in Atlantic cod Lene Kleppe, Rolf B Edvardsen, Heiner Kuhl, Ketil Malde, Tomasz Furmanek, Øyvind Drivenes, Richard Reinhardt, Geir L Taranger, Anna Wargelius BMC Genomics 2012, 13:443 (1 September 2012) Abstract \| Full text \| PDF \| PubMed
		Research article The lavender plumage colour in Japanese quail is associated with a complex mutation in the region of MLPH that is related to differences in growth, feed consumption and body temperature Bertrand Bed’hom, Mohsen Vaez, Jean-Luc Coville, David Gourichon, Olivier Chastel, Sarah Follett, Terry Burke, Francis Minvielle BMC Genomics 2012, 13:442 (31 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptomic and metabolomic profiling of chicken adipose tissue in response to insulin neutralization and fasting Bo Ji, Ben Ernest, Jessica R Gooding, Suchita Das, Arnold M Saxton, Jean Simon, Joelle Dupont, Sonia Métayer-Coustard, Shawn R Campagna, Brynn H Voy BMC Genomics 2012, 13:441 (31 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Sequencing and analysis of a South Asian-Indian personal genome Ravi Gupta, Aakrosh Ratan, Changanamkandath Rajesh, Rong Chen, Hie Lim Kim, Richard Burhans, Webb Miller, Sam Santhosh, Ramana V Davuluri, Atul J Butte, Stephan C Schuster, Somasekar Seshagiri, George Thomas BMC Genomics 2012, 13:440 (31 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus) Hilary C Miller, Patrick J Biggs, Claudia Voelckel, Nicola J Nelson BMC Genomics 2012, 13:439 (31 August 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Transcriptomic analysis of an early stage embryo of Tuatara (Sphenodon punctatus), the only surviving member of one of the earliest-diverging reptile lineages, will facilitate annotation of its genome and provide a useful resource for studying amniote evolution.
		Research article Exploration of the core metabolism of symbiotic bacteria Cecilia Coimbra Klein, Ludovic Cottret, Janice Kielbassa, Hubert Charles, Christian Gautier, Ana Tereza Ribeiro de Vasconcelos, Vincent Lacroix, Marie-France Sagot BMC Genomics 2012, 13:438 (31 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells Mingzhu Zhu, Xin Deng, Trupti Joshi, Dong Xu, Gary Stacey, Jianlin Cheng BMC Genomics 2012, 13:437 (31 August 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Normalization of a chromosomal contact map Axel Cournac, Hervé Marie-Nelly, Martial Marbouty, Romain Koszul, Julien Mozziconacci BMC Genomics 2012, 13:436 (30 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Coevolution between simple sequence repeats (SSRs) and virus genome size Xiangyan Zhao, Yonglei Tian, Ronghua Yang, Haiping Feng, Qingjian Ouyang, You Tian, Zhongyang Tan, Mingfu Li, Yile Niu, Jianhui Jiang, Guoli Shen, Ruqin Yu BMC Genomics 2012, 13:435 (30 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptome profiling in conifers and the PiceaGenExpress database show patterns of diversification within gene families and interspecific conservation in vascular gene expression Elie Raherison, Philippe Rigault, Sébastien Caron, Pier-Luc Poulin, Brian Boyle, Jukka-Pekka Verta, Isabelle Giguère, Claude Bomal, Jörg Bohlmann, John MacKay BMC Genomics 2012, 13:434 (29 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Regulatory elements of Caenorhabditis elegans ribosomal protein genes Monica C Sleumer, Guifeng Wei, Yunfei Wang, Hao Chang, Tao Xu, Runsheng Chen, Michael Q Zhang BMC Genomics 2012, 13:433 (28 August 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis Silje Brenna-Hansen, Jieying Li, Matthew P Kent, Elizabeth G Boulding, Sonja Dominik, William S Davidson, Sigbjørn Lien BMC Genomics 2012, 13:432 (28 August 2012) Abstract \| Full text \| PDF \| PubMed