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		Research article Systematic analysis of palatal transcriptome to identify cleft palate genes within TGFβ3-knockout mice alleles: RNA-Seq analysis of TGFβ3 Mice Ferhat Ozturk, You Li, Xiujuan Zhu, Chittibabu Guda, Ali Nawshad BMC Genomics 2013, 14:113 (20 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Cross-species transcriptional network analysis reveals conservation and variation in response to metal stress in cyanobacteria Jiangxin Wang, Gang Wu, Lei Chen, Weiwen Zhang BMC Genomics 2013, 14:112 (19 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article MicroRNAs miR-26a, miR-26b, and miR-29b accelerate osteogenic differentiation of unrestricted somatic stem cells from human cord blood Hans-Ingo Trompeter, Janine Dreesen, Eugenie Hermann, Katharina M Iwaniuk, Markus Hafner, Neil Renwick, Thomas Tuschl, Peter Wernet BMC Genomics 2013, 14:111 (19 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Learning contextual gene set interaction networks of cancer with condition specificity Sungwon Jung, Michael Verdicchio, Jeff Kiefer, Daniel Von Hoff, Michael Berens, Michael Bittner, Seungchan Kim BMC Genomics 2013, 14:110 (19 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genome-wide analysis of NBS-encoding disease resistance genes in Cucumis sativus and phylogenetic study of NBS-encoding genes in Cucurbitaceae crops Hongjian Wan, Wei Yuan, Kailiang Bo, Jia Shen, Xin Pang, Jinfeng Chen BMC Genomics 2013, 14:109 (19 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article The genomic signature of trait-associated variants Alida S D Kindt, Pau Navarro, Colin A M Semple, Chris S Haley BMC Genomics 2013, 14:108 (18 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Characterization of the global transcriptome for Pyropia haitanensis (Bangiales, Rhodophyta) and development of cSSR markers Chaotian Xie, Bing Li, Yan Xu, Dehua Ji, Changsheng Chen BMC Genomics 2013, 14:107 (16 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis Sourav Roy, Laetitia Poidevin, Tao Jiang, Howard S Judelson BMC Genomics 2013, 14:106 (16 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide map of quantified epigenetic changes during in vitro chondrogenic differentiation of primary human mesenchymal stem cells Sarah R Herlofsen, Jan Christian Bryne, Torill Høiby, Li Wang, Robbyn Issner, Xiaolan Zhang, Michael J Coyne, Patrick Boyle, Hongcang Gu, Leonardo A Meza-Zepeda, Philippe Collas, Tarjei S Mikkelsen, Jan E Brinchmann BMC Genomics 2013, 14:105 (15 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A highly expressed miR-101 isomiR is a functional silencing small RNA Franc Llorens, Mónica Bañez-Coronel, Lorena Pantano, Jose Antonio del Río, Isidre Ferrer, Xavier Estivill, Eulàlia Martí BMC Genomics 2013, 14:104 (15 February 2013) Abstract \| Provisional PDF \| PubMed
		Research article Pause-melting misalignment: a novel model for the birth and motif indel of tandem repeats in the mitochondrial genome Wei Shi, Xiao-Yu Kong, Zhong-Ming Wang, Shan-Shan Yu, Hai-Xia Chen, Elizabeth A De Stasio BMC Genomics 2013, 14:103 (15 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Biclustering reveals breast cancer tumour subgroups with common clinical features and improves prediction of disease recurrence Yi Kan Wang, Cristin G Print, Edmund J Crampin BMC Genomics 2013, 14:102 (13 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications Anneleen Van Geystelen, Ronny Decorte, Maarten HD Larmuseau BMC Genomics 2013, 14:101 (13 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover Istvan Nagy, Susanne Barth, Jeanne Mehenni-Ciz, Michael T Abberton, Dan Milbourne BMC Genomics 2013, 14:100 (13 February 2013) Abstract \| Provisional PDF \| PubMed
		Research article Nuclear Factor I genomic binding associates with chromatin boundaries Milos Pjanic, Christoph D Schmid, Armelle Gaussin, Giovanna Ambrosini, Jozef Adamcik, Petar Pjanic, Genta Plasari, Jan Kerschgens, Giovani Dietler, Philipp Bucher, Nicolas Mermod BMC Genomics 2013, 14:99 (12 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Novel microRNA families expanded in the human genome Zhi-Qiang Du, Cai-Xia Yang, Max F Rothschild, Jason W Ross BMC Genomics 2013, 14:98 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptomic analysis of differentially expressed genes during anther development in genetic male sterile and wild type cotton by digital gene-expression profiling Mingming Wei, Meizhen Song, Shuli Fan, Shuxun Yu BMC Genomics 2013, 14:97 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs Haiyin Chen-Harris, Monica K Borucki, Clinton Torres, Tom R Slezak, Jonathan E Allen BMC Genomics 2013, 14:96 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence Chris M Rands, Aaron Darling, Matthew Fujita, Lesheng Kong, Matthew T Webster, Céline Clabaut, Richard D Emes, Andreas Heger, Stephen Meader, Michael Brent Hawkins, Michael B Eisen, Clotilde Teiling, Jason Affourtit, Benjamin Boese, Peter R Grant, Barbara Rosemary Grant, Jonathan A Eisen, Arhat Abzhanov, Chris P Ponting BMC Genomics 2013, 14:95 (12 February 2013) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology \| Editor’s summary 204 years after Charles Darwin’s birth, sequencing of the genome of the Darwin’s Finch Geospiza magnirostris reveals over 13,000 predicted genes, of which two under positive selection may have contributed to beak morphology evolution, which so interested Darwin.
		Research article Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria Dmitry A Ravcheev, Aaron A Best, Natalia V Sernova, Marat D Kazanov, Pavel S Novichkov, Dmitry A Rodionov BMC Genomics 2013, 14:94 (12 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress Reena Narsai, Chuang Wang, Jie Chen, Jianli Wu, Huixia Shou, James Whelan BMC Genomics 2013, 14:93 (12 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Combined ChIP-Seq and transcriptome analysis identifies AP-1/JunD as a primary regulator of oxidative stress and IL-1β synthesis in macrophages Richard P Hull, Prashant K Srivastava, Zelpha D’Souza, Santosh S Atanur, Fatima Mechta-Grigoriou, Laurence Game, Enrico Petretto, H Terence Cook, Timothy J Aitman, Jacques Behmoaras BMC Genomics 2013, 14:92 (11 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Global analyses of Ceratocystis cacaofunesta mitochondria: from genome to proteome Alinne Batista Ambrosio, Leandro Costa do Nascimento, Bruno V Oliveira, Paulo José P L Teixeira, Ricardo A Tiburcio, Daniela P Toledo Thomazella, Adriana F P Leme, Marcelo F Carazzolle, Ramon O Vidal, Piotr Mieczkowski, Lyndel W Meinhardt, Gonçalo A G Pereira, Odalys G Cabrera BMC Genomics 2013, 14:91 (11 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Genotyping 1000 yeast strains by next-generation sequencing Stefan Wilkening, Manu M Tekkedil, Gen Lin, Emilie S Fritsch, Wu Wei, Julien Gagneur, David W Lazinski, Andrew Camilli, Lars M Steinmetz BMC Genomics 2013, 14:90 (9 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Recombinant structures expand and contract inter and intragenic diversification at the KIR locus Chul-Woo Pyo, Ruihan Wang, Quyen Vu, Nezih Cereb, Soo Young Yang, Fuh-Mei Duh, Steven Wolinsky, Maureen P Martin, Mary Carrington, Daniel E Geraghty BMC Genomics 2013, 14:89 (8 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed

	All
		Research article Systematic analysis of palatal transcriptome to identify cleft palate genes within TGFβ3-knockout mice alleles: RNA-Seq analysis of TGFβ3 Mice Ferhat Ozturk, You Li, Xiujuan Zhu, Chittibabu Guda, Ali Nawshad BMC Genomics 2013, 14:113 (20 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Cross-species transcriptional network analysis reveals conservation and variation in response to metal stress in cyanobacteria Jiangxin Wang, Gang Wu, Lei Chen, Weiwen Zhang BMC Genomics 2013, 14:112 (19 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article MicroRNAs miR-26a, miR-26b, and miR-29b accelerate osteogenic differentiation of unrestricted somatic stem cells from human cord blood Hans-Ingo Trompeter, Janine Dreesen, Eugenie Hermann, Katharina M Iwaniuk, Markus Hafner, Neil Renwick, Thomas Tuschl, Peter Wernet BMC Genomics 2013, 14:111 (19 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Learning contextual gene set interaction networks of cancer with condition specificity Sungwon Jung, Michael Verdicchio, Jeff Kiefer, Daniel Von Hoff, Michael Berens, Michael Bittner, Seungchan Kim BMC Genomics 2013, 14:110 (19 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genome-wide analysis of NBS-encoding disease resistance genes in Cucumis sativus and phylogenetic study of NBS-encoding genes in Cucurbitaceae crops Hongjian Wan, Wei Yuan, Kailiang Bo, Jia Shen, Xin Pang, Jinfeng Chen BMC Genomics 2013, 14:109 (19 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article The genomic signature of trait-associated variants Alida S D Kindt, Pau Navarro, Colin A M Semple, Chris S Haley BMC Genomics 2013, 14:108 (18 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Characterization of the global transcriptome for Pyropia haitanensis (Bangiales, Rhodophyta) and development of cSSR markers Chaotian Xie, Bing Li, Yan Xu, Dehua Ji, Changsheng Chen BMC Genomics 2013, 14:107 (16 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis Sourav Roy, Laetitia Poidevin, Tao Jiang, Howard S Judelson BMC Genomics 2013, 14:106 (16 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide map of quantified epigenetic changes during in vitro chondrogenic differentiation of primary human mesenchymal stem cells Sarah R Herlofsen, Jan Christian Bryne, Torill Høiby, Li Wang, Robbyn Issner, Xiaolan Zhang, Michael J Coyne, Patrick Boyle, Hongcang Gu, Leonardo A Meza-Zepeda, Philippe Collas, Tarjei S Mikkelsen, Jan E Brinchmann BMC Genomics 2013, 14:105 (15 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A highly expressed miR-101 isomiR is a functional silencing small RNA Franc Llorens, Mónica Bañez-Coronel, Lorena Pantano, Jose Antonio del Río, Isidre Ferrer, Xavier Estivill, Eulàlia Martí BMC Genomics 2013, 14:104 (15 February 2013) Abstract \| Provisional PDF \| PubMed
		Research article Pause-melting misalignment: a novel model for the birth and motif indel of tandem repeats in the mitochondrial genome Wei Shi, Xiao-Yu Kong, Zhong-Ming Wang, Shan-Shan Yu, Hai-Xia Chen, Elizabeth A De Stasio BMC Genomics 2013, 14:103 (15 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Biclustering reveals breast cancer tumour subgroups with common clinical features and improves prediction of disease recurrence Yi Kan Wang, Cristin G Print, Edmund J Crampin BMC Genomics 2013, 14:102 (13 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications Anneleen Van Geystelen, Ronny Decorte, Maarten HD Larmuseau BMC Genomics 2013, 14:101 (13 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover Istvan Nagy, Susanne Barth, Jeanne Mehenni-Ciz, Michael T Abberton, Dan Milbourne BMC Genomics 2013, 14:100 (13 February 2013) Abstract \| Provisional PDF \| PubMed
		Research article Nuclear Factor I genomic binding associates with chromatin boundaries Milos Pjanic, Christoph D Schmid, Armelle Gaussin, Giovanna Ambrosini, Jozef Adamcik, Petar Pjanic, Genta Plasari, Jan Kerschgens, Giovani Dietler, Philipp Bucher, Nicolas Mermod BMC Genomics 2013, 14:99 (12 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Novel microRNA families expanded in the human genome Zhi-Qiang Du, Cai-Xia Yang, Max F Rothschild, Jason W Ross BMC Genomics 2013, 14:98 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptomic analysis of differentially expressed genes during anther development in genetic male sterile and wild type cotton by digital gene-expression profiling Mingming Wei, Meizhen Song, Shuli Fan, Shuxun Yu BMC Genomics 2013, 14:97 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs Haiyin Chen-Harris, Monica K Borucki, Clinton Torres, Tom R Slezak, Jonathan E Allen BMC Genomics 2013, 14:96 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence Chris M Rands, Aaron Darling, Matthew Fujita, Lesheng Kong, Matthew T Webster, Céline Clabaut, Richard D Emes, Andreas Heger, Stephen Meader, Michael Brent Hawkins, Michael B Eisen, Clotilde Teiling, Jason Affourtit, Benjamin Boese, Peter R Grant, Barbara Rosemary Grant, Jonathan A Eisen, Arhat Abzhanov, Chris P Ponting BMC Genomics 2013, 14:95 (12 February 2013) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology \| Editor’s summary 204 years after Charles Darwin’s birth, sequencing of the genome of the Darwin’s Finch Geospiza magnirostris reveals over 13,000 predicted genes, of which two under positive selection may have contributed to beak morphology evolution, which so interested Darwin.
		Research article Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria Dmitry A Ravcheev, Aaron A Best, Natalia V Sernova, Marat D Kazanov, Pavel S Novichkov, Dmitry A Rodionov BMC Genomics 2013, 14:94 (12 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress Reena Narsai, Chuang Wang, Jie Chen, Jianli Wu, Huixia Shou, James Whelan BMC Genomics 2013, 14:93 (12 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Combined ChIP-Seq and transcriptome analysis identifies AP-1/JunD as a primary regulator of oxidative stress and IL-1β synthesis in macrophages Richard P Hull, Prashant K Srivastava, Zelpha D’Souza, Santosh S Atanur, Fatima Mechta-Grigoriou, Laurence Game, Enrico Petretto, H Terence Cook, Timothy J Aitman, Jacques Behmoaras BMC Genomics 2013, 14:92 (11 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Global analyses of Ceratocystis cacaofunesta mitochondria: from genome to proteome Alinne Batista Ambrosio, Leandro Costa do Nascimento, Bruno V Oliveira, Paulo José P L Teixeira, Ricardo A Tiburcio, Daniela P Toledo Thomazella, Adriana F P Leme, Marcelo F Carazzolle, Ramon O Vidal, Piotr Mieczkowski, Lyndel W Meinhardt, Gonçalo A G Pereira, Odalys G Cabrera BMC Genomics 2013, 14:91 (11 February 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Genotyping 1000 yeast strains by next-generation sequencing Stefan Wilkening, Manu M Tekkedil, Gen Lin, Emilie S Fritsch, Wu Wei, Julien Gagneur, David W Lazinski, Andrew Camilli, Lars M Steinmetz BMC Genomics 2013, 14:90 (9 February 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Recombinant structures expand and contract inter and intragenic diversification at the KIR locus Chul-Woo Pyo, Ruihan Wang, Quyen Vu, Nezih Cereb, Soo Young Yang, Fuh-Mei Duh, Steven Wolinsky, Maureen P Martin, Mary Carrington, Daniel E Geraghty BMC Genomics 2013, 14:89 (8 February 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed