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Influence of developmental stage and genotype on liver mRNA levels among wild, domesticated, and hybrid rainbow trout (Oncorhynchus mykiss)
Samantha L White, Dionne Sakhrani, Roy G Danzmann, Robert H Devlin BMC Genomics 2013, 14:673 (2 October 2013)
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The shaping and functional consequences of the dosage effect landscape in multiple myeloma
Mehmet K Samur, Parantu K Shah, Xujun Wang, Stéphane Minvielle, Florence Magrangeas, Hervé Avet-Loiseau, Nikhil C Munshi, Cheng Li BMC Genomics 2013, 14:672 (2 October 2013)
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An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome
Marco Ferrarini, Marco Moretto, Judson A Ward, Nada ¿urbanovski, Vladimir Stevanovi¿, Lara Giongo, Roberto Viola, Duccio Cavalieri, Riccardo Velasco, Alessandro Cestaro, Daniel J Sargent BMC Genomics 2013, 14:670 (1 October 2013)
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Editor’s summary
Comparison of PacBio RS single-molecule, realtime (SMRT) sequencing with Illumina HiSeq2000 technology reveals PacBio to be more accurate than Illumina in the de novo assembly of a chloroplast genome due to longer read lengths and lower GC bias. |
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Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study
Tao Wu, Zhigang Zhang, Bin Liu, Dezhi Hou, Yun Liang, Jie Zhang, Peng Shi BMC Genomics 2013, 14:669 (1 October 2013)
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Stacking resistance to crown gall and nematodes in walnut rootstocks
Sriema L Walawage, Monica T Britton, Charles A Leslie, Sandra L Uratsu, YingYue Li, Abhaya M Dandekar BMC Genomics 2013, 14:668 (1 October 2013)
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RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation
Sandra Wiegand, Sascha Dietrich, Robert Hertel, Johannes Bongaerts, Stefan Evers, Sonja Volland, Rolf Daniel, Heiko Liesegang BMC Genomics 2013, 14:667 (1 October 2013)
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Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees
Pablo Cingolani, Xiaoyi Cao, Radhika S Khetani, Chieh-Chun Chen, Melissa Coon, Alya¿a Sammak, Aliccia Bollig-Fischer, Susan Land, Yun Huang, Matthew E Hudson, Mark D Garfinkel, Sheng Zhong, Gene E Robinson, Douglas M Ruden BMC Genomics 2013, 14:666 (30 September 2013)
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Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
Matthias Harbers, Sachi Kato, Michiel de Hoon, Yoshihide Hayashizaki, Piero Carninici, Charles Plessy BMC Genomics 2013, 14:665 (30 September 2013)
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Bolbase: a comprehensive genomics database for Brassica oleracea
Jingyin Yu, Meixia Zhao, Xiaowu Wang, Chaobo Tong, Shunmou Huang, Sadia Tehrim, Yumei Liu, Wei Hua, Shengyi Liu BMC Genomics 2013, 14:664 (30 September 2013)
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Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus
Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, Wouter de Bruijn, Kerry S Burton, Michael P Challen, Pedro M Coutinho, Daniel C Eastwood, Birgit S Gruben, Miia R Mäkelä, Francis Martin, Marina Nadal, Joost van den Brink, Ad Wiebenga, Miaomiao Zhou, Bernard Henrissat, Mirjam Kabel, Harry Gruppen, Ronald P de Vries BMC Genomics 2013, 14:663 (30 September 2013)
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Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress
Yanjie Xu, Shan Gao, Yingjie Yang, Mingyun Huang, Lina Cheng, Qian Wei, Zhangjun Fei, Junping Gao, Bo Hong BMC Genomics 2013, 14:662 (28 September 2013)
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RIP-seq of BmAgo2-associated small RNAs reveal various types of small non-coding RNAs in the silkworm, Bombyx mori
Zuoming Nie, Fang Zhou, Dan Li, Zhengbing Lv, Jian Chen, Yue Liu, Jianhong Shu, Qing Sheng, Wei Yu, Wenping Zhang, Caiying Jiang, Yuhua Yao, Juming Yao, Yongfeng Jin, Yaozhou Zhang BMC Genomics 2013, 14:661 (28 September 2013)
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Custom microarray construction and analysis for determining potential biomarkers of subchronic androgen exposure in the Eastern Mosquitofish (Gambusia holbrooki)
Erica K Brockmeier, Fahong Yu, David Moraga, Timothy A Bargar, Nancy D Denslow BMC Genomics 2013, 14:660 (28 September 2013)
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Male-specific fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains
Justin E Dalton, Justin M Fear, Simon Knott, Bruce S Baker, Lauren M McIntyre, Michelle N Arbeitman BMC Genomics 2013, 14:659 (27 September 2013)
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Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides
Monique Royer, Ralf Koebnik, Mélanie Marguerettaz, Valérie Barbe, Guillaume P Robin, Chrystelle Brin, Sébastien Carrere, Camila Gomez, Manuela Hügelland, Ginka H Völler, Julie Noëll, Isabelle Pieretti, Saskia Rausch, Valérie Verdier, Stéphane Poussier, Philippe Rott, Roderich D Süssmuth, Stéphane Cociancich BMC Genomics 2013, 14:658 (27 September 2013)
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Targets of light signalling in Trichoderma reesei
Doris Tisch, Monika Schmoll BMC Genomics 2013, 14:657 (26 September 2013)
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FGF2-induced effects on transcriptome associated with regeneration competence in adult human fibroblasts
Olga Kashpur, David LaPointe, Sakthikumar Ambady, Elizabeth F Ryder, Tanja Dominko BMC Genomics 2013, 14:656 (26 September 2013)
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Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits
Richard S Fletcher, Jack L Mullen, Seth Yoder, William L Bauerle, Gretchen Reuning, Saunak Sen, Eli Meyer, Thomas E Juenger, John K McKay BMC Genomics 2013, 14:655 (25 September 2013)
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Comparison of RefSeq protein-coding regions in human and vertebrate genomes
Jessica H Fong, Terence D Murphy, Kim D Pruitt BMC Genomics 2013, 14:654 (25 September 2013)
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HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids
Aziz Mithani, Eric J Belfield, Carly Brown, Caifu Jiang, Lindsey J Leach, Nicholas P Harberd BMC Genomics 2013, 14:653 (24 September 2013)
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Different patterns of gene structure divergence following gene duplication in Arabidopsis
Yupeng Wang, Xu Tan, Andrew H Paterson BMC Genomics 2013, 14:652 (24 September 2013)
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Computational prediction of associations between long non-coding RNAs and proteins
Qiongshi Lu, Sijin Ren, Ming Lu, Yong Zhang, Dahai Zhu, Xuegong Zhang, Tingting Li BMC Genomics 2013, 14:651 (24 September 2013)
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Rapid genome wide mapping of phosphine resistance loci by a simple regional averaging analysis in the red flour beetle, Tribolium castaneum
Rajeswaran Jagadeesan, Amelia Fotheringham, Paul R Ebert, David I Schlipalius BMC Genomics 2013, 14:650 (24 September 2013)
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Genome-wide copy number variations in Oryza sativa L.
Ping Yu, Cai-Hong Wang, Qun Xu, Yue Feng, Xiao-Ping Yuan, Han-Yong Yu, Yi-Ping Wang, Sheng-Xiang Tang, Xing-Hua Wei BMC Genomics 2013, 14:649 (23 September 2013)
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Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs
Jeroen Crappé, Wim Van Criekinge, Geert Trooskens, Eisuke Hayakawa, Walter Luyten, Geert Baggerman, Gerben Menschaert BMC Genomics 2013, 14:648 (23 September 2013)
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