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Research article   Open Access

Genomic and expression analysis of the flax (Linum usitatissimum) family of glycosyl hydrolase 35 genes

Neil Hobson, Michael K Deyholos BMC Genomics 2013, 14:344 (23 May 2013)

Abstract | Provisional PDF

Research article   Open Access

An integrative "omics" approach identifies new candidate genes to impact aroma volatiles in peach fruit

Gerardo Sánchez, Mónica Venegas-Calerón, Joaquín J Salas, Antonio Monforte, María L Badenes, Antonio Granell BMC Genomics 2013, 14:343 (23 May 2013)

Abstract | Provisional PDF

Research article   Open Access

Genome-scale transcriptional analyses of first-generation interspecific sunflower hybrids reveals broad regulatory compatibility

Heather C Rowe, Loren H Rieseberg BMC Genomics 2013, 14:342 (23 May 2013)

Abstract | Provisional PDF

Research article   Open Access

Identification of thyroid hormone receptor binding sites in developing mouse cerebellum

Remi Gagne, James R Green, Hongyan Dong, Mike G Wade, Carole L Yauk BMC Genomics 2013, 14:341 (23 May 2013)

Abstract | Provisional PDF

Research article   Open Access

Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions

Liangliang Gao, Zheng Jin Tu, Benjamin P Millett, James M Bradeen BMC Genomics 2013, 14:340 (23 May 2013)

Abstract | Provisional PDF

Research article   Open Access

Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis

Li Chen, Qun Yue, Xinyu Zhang, Meichun Xiang, Chengshu Wang, Shaojie Li, Yongsheng Che, Francisco Javier Ortiz-López, Gerald F Bills, Xingzhong Liu, Zhiqiang An BMC Genomics 2013, 14:339 (20 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

The role of microRNAs in the pathogenesis of MMPi-induced skin fibrodysplasia

Daniel P Tonge, Jonathan D Tugwood, Janet Kelsall, Timothy W Gant BMC Genomics 2013, 14:338 (20 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Integrative genomic analysis of CREB defines a critical role for transcription factor networks in mediating the fed/fasted switch in liver

Logan J Everett, John Le Lay, Sabina Lukovac, Diana Bernstein, David J Steger, Mitchell A Lazar, Klaus H Kaestner BMC Genomics 2013, 14:337 (17 May 2013)

Abstract | Provisional PDF | PubMed

Methodology article   Open Access

A simple and reproducible breast cancer prognostic test

Luigi Marchionni, Bahman Afsari, Donald Geman, Jeffrey T Leek BMC Genomics 2013, 14:336 (17 May 2013)

Abstract | Full text | PDF | PubMed

Research article   Open Access

Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae

Xiao Lin, Yu Zhang, Hanhui Kuang, Jiongjiong Chen BMC Genomics 2013, 14:335 (17 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Genetic parameters and genome-wide association study of hyperpigmentation of the visceral peritoneum in chickens

Chenglong Luo, Hao Qu, Jie Wang, Yan Wang, Jie Ma, Chunyu Li, Chunfen Yang, Xiaoxiang Hu, Ning Li, Dingming Shu BMC Genomics 2013, 14:334 (16 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Genomic and physiological variability within Group II (non-proteolytic) Clostridium botulinum

Sandra C Stringer, Andrew T Carter, Martin D Webb, Ewelina Wachnicka, Lisa C Crossman, Mohammed Sebaihia, Michael W Peck BMC Genomics 2013, 14:333 (16 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Structural and functional annotation of the porcine immunome

Harry D Dawson, Jane E Loveland, Géraldine Pascal, James GR Gilbert, Hirohide Uenishi, Katherine M Mann, Yongming Sang, Jie Zhang, Denise Carvalho-Silva, Toby Hunt, Matthew Hardy, Zhiliang Hu, Shu-Hong Zhao, Anna Anselmo, Hiroki Shinkai, Celine Chen, Bouabid Badaoui, Daniel Berman, Clara Amid, Mike Kay, David Lloyd, Catherine Snow, Takeya Morozumi, Ryan Pei-Yen Cheng, Megan Bystrom, Ronan Kapetanovic, John C Schwartz, Ranjit Kataria, Matthew Astley, Eric Fritz et al. BMC Genomics 2013, 14:332 (15 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

Research article   Open Access

Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish

Håvard Aanes, Olga Østrup, Ingrid S Andersen, Lars F Moen, Sinnakaruppan Mathavan, Philippe Collas, Peter Alestrom BMC Genomics 2013, 14:331 (15 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Characterisation of a transcriptome to find sequence differences between two differentially migrating subspecies of the willow warbler Phylloscopus trochilus

Max Lundberg, John Boss, Björn Canbäck, Miriam Liedvogel, Keith W Larson, Mats Grahn, Susanne Åkesson, Staffan Bensch, Anthony Wright BMC Genomics 2013, 14:330 (14 May 2013)

Abstract | Full text | PDF | PubMed

Research article   Open Access

Comparative transcriptome analysis and marker development of two closely related Primrose species (Primula poissonii and Primula wilsonii)

Lu Zhang, Hai-Fei Yan, Wei Wu, Hui Yu, Xue-Jun Ge BMC Genomics 2013, 14:329 (14 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

Methodology article   Open Access

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

Ya Yang, Stephen A Smith BMC Genomics 2013, 14:328 (14 May 2013)

Abstract | Provisional PDF | PubMed

Review   Open Access

The role of NOI-domain containing proteins in plant immune signaling

Ahmed J Afzal, Jin Hee Kim, David Mackey BMC Genomics 2013, 14:327 (14 May 2013)

Abstract | Full text | PDF | PubMed

Research article   Open Access

Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae

Vidhyavathi Raman, Stacey A Simon, Amanda Romag, Feray Demirci, Sandra M Mathioni, Jixian Zhai, Blake C Meyers, Nicole M Donofrio BMC Genomics 2013, 14:326 (12 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

Research article   Open Access

A gene expression restriction network mediated by sense and antisense Alu sequences located on protein-coding messenger RNAs

Kung-Hao Liang, Chau-Ting Yeh BMC Genomics 2013, 14:325 (11 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

Research article   Open Access

Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information

Ricardo de Matos Simoes, Matthias Dehmer, Frank Emmert-Streib BMC Genomics 2013, 14:324 (11 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Fate of the human Y chromosome linked genes and loci in prostate cancer cell lines DU145 and LNCaP

Sandeep Yadav, Anju Kumari, Sher Ali BMC Genomics 2013, 14:323 (11 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

Research article   Open Access

Nurses' workarounds in acute healthcare settings: a scoping review

Deborah S Debono, David Greenfield, Joanne F Travaglia, Janet C Long, Deborah Black, Julie Johnson, Jeffrey Braithwaite BMC Genomics 2013, 14:322 (10 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Alterations in expression of endometrial genes coding for proteins secreted into the uterine lumen during conceptus elongation in cattle

Niamh Forde, Jai P Mehta, Paul A McGettigan, Solomon Mamo, Fuller W Bazer, Thomas E Spencer, Pat Lonergan BMC Genomics 2013, 14:321 (10 May 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access Highly Accessed

Sequencing platform and library preparation choices impact viral metagenomes

Sergei A Solonenko, J Ignacio-Espinoza, Adriana Alberti, Corinne Cruaud, Steven Hallam, Kostas Konstantinidis, Gene Tyson, Patrick Wincker, Matthew B Sullivan BMC Genomics 2013, 14:320 (10 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

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