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Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions
Jainab Khatun, Yanbao Yu, John A Wrobel, Brian A Risk, Harsha P Gunawardena, Ashley Secrest, Wendy J Spitzer, Ling Xie, Li Wang, Xian Chen, Morgan C Giddings BMC Genomics 2013, 14:141 (28 February 2013)
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MicroRNAs and their putative targets in Brassica napus seed maturation
Daiqing Huang, Chushin Koh, J Allan Feurtado, Edward WT Tsang, Adrian J Cutler BMC Genomics 2013, 14:140 (28 February 2013)
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MicroRNA miR-30 family regulates non-attachment growth of breast cancer cells
Maria Ouzounova, Tri Vuong, Pierre-Benoit Ancey, Mylène Ferrand, Geoffroy Durand, Florence Le-Calvez Kelm, Carlo Croce, Chantal Matar, Zdenko Herceg, Hector Hernandez-Vargas BMC Genomics 2013, 14:139 (28 February 2013)
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PacC and pH--dependent transcriptome of the mycotrophic fungus Trichoderma virens
Naomi Trushina, Michal Levin, Prasun K Mukherjee, Benjamin A Horwitz BMC Genomics 2013, 14:138 (28 February 2013)
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A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
Glenn T Howe, Jianbin Yu, Brian Knaus, Richard Cronn, Scott Kolpak, Peter Dolan, W Walter Lorenz, Jeffrey FD Dean BMC Genomics 2013, 14:137 (28 February 2013)
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A Drosophila functional evaluation of candidates from human genome-wide association studies of type 2 diabetes and related metabolic traits identifies tissue-specific roles for dHHEX
Jay Pendse, Prasanna V Ramachandran, Jianbo Na, Narisu Narisu, Jill L Fink, Ross L Cagan, Francis S Collins, Thomas J Baranski BMC Genomics 2013, 14:136 (27 February 2013)
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Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum
Amanda K Gibson, Zach Smith, Clay Fuqua, Keith Clay, John K Colbourne BMC Genomics 2013, 14:135 (27 February 2013)
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Horizontal transfer of OC1 transposons in the Tasmanian devil
Clement Gilbert, Paul Waters, Cedric Feschotte, Sarah Schaack BMC Genomics 2013, 14:134 (27 February 2013)
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Pathway-focused bioassays and transcriptome analysis contribute to a better activity monitoring of complex herbal remedies
Angela Klein, Oliver A Wrulich, Marcel Jenny, Peter Gruber, Kathrin Becker, Dietmar Fuchs, Johanna M Gostner, Florian Überall BMC Genomics 2013, 14:133 (27 February 2013)
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Accurate indel prediction using paired-end short reads
Dominik Grimm, Jörg Hagmann, Daniel Koenig, Detlef Weigel, Karsten Borgwardt BMC Genomics 2013, 14:132 (27 February 2013)
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Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins
Li Jiang, Jicai Jiang, Jie Yang, Xuan Liu, Jiying Wang, Haifei Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang BMC Genomics 2013, 14:131 (27 February 2013)
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Identification and functional analysis of cytochrome P450 complement in Streptomyces virginiae IBL14
Zhi-Zhen Li, Xiao-Fei Li, Wei Yang, Xiang Dong, Jie Yu, Shu-Liang Zhu, Man Li, Li Xie, Wang-Yu Tong BMC Genomics 2013, 14:130 (27 February 2013)
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Neurocarta: aggregating and sharing disease-gene relations for the neurosciences
Elodie Portales-Casamar, Carolyn Ch¿ng, Frances Lui, Nicolas St-Georges, Anton Zoubarev, Artemis Y Lai, Mark Lee, Cathy Kwok, Willie Kwok, Luchia Tseng, Paul Pavlidis BMC Genomics 2013, 14:129 (26 February 2013)
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A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data
Nuno Sepúlveda, Susana G Campino, Samuel A Assefa, Colin J Sutherland, Arnab Pain, Taane G Clark BMC Genomics 2013, 14:128 (26 February 2013)
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Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation: Trichuris muris-induced colitis genetic study
Scott E Levison, Paul Fisher, Jenny Hankinson, Leo Zeef, Steve Eyre, William E Ollier, John T McLaughlin, Andy Brass, Richard K Grencis, Joanne L Pennock BMC Genomics 2013, 14:127 (26 February 2013)
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Global analysis of transcriptional regulators in Staphylococcus aureus
Jose Antonio Ibarra, Ernesto Pérez-Rueda, Ronan K Carroll, Lindsey N Shaw BMC Genomics 2013, 14:126 (26 February 2013)
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De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud)
Liu Touming, Zhu Siyuan, Tang Qingming, Chen Ping, Yu Yongting, Tang Shouwei BMC Genomics 2013, 14:125 (26 February 2013)
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Massive screening of copy number population-scale variation in Bos taurus genome
Francesco Cicconardi, Giovanni Chillemi, Anna Tramontano, Cinzia Marchitelli, Alessio Valentini, Paolo Ajmone-Marsan, Alessandro Nardone BMC Genomics 2013, 14:124 (26 February 2013)
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Comparative transcriptomics of early dipteran development
Eva Jiménez-Guri, Jaime Huerta-Cepas, Luca Cozzuto, Karl R Wotton, Hui Kang, Heinz Himmelbauer, Guglielmo Roma, Toni Gabaldón, Johannes Jaeger BMC Genomics 2013, 14:123 (24 February 2013)
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Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers
Nazia Parveen, Ayesha Masood, Nouman Iftikhar, Bushra F Minhas, Rashid Minhas, Uzma Nawaz, Amir Ali Abbasi BMC Genomics 2013, 14:122 (23 February 2013)
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Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism
Lea Atanasova, Stephane Crom, Sabine Gruber, Fanny Coulpier, Verena Seidl-Seiboth, Christian P Kubicek, Irina S Druzhinina BMC Genomics 2013, 14:121 (22 February 2013)
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High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L
Régine Delourme, Cyril Falentin, Berline Fopa Fomeju, Marie Boillot, Gilles Lassalle, Isabelle André, Jorge Duarte, Valérie Gauthier, Nicole Lucante, Amandine Marty, Maryline Pauchon, Jean-Philippe Pichon, Nicolas Ribière, Gwenn Trotoux, Philippe Blanchard, Nathalie Rivière, Jean-Pierre Martinant, Jérôme Pauquet BMC Genomics 2013, 14:120 (22 February 2013)
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MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum
Sarah M Schmidt, Petra M Houterman, Ines Schreiver, Lisong Ma, Stefan Amyotte, Biju Chellappan, Sjef Boeren, Frank L Takken, Martijn Rep BMC Genomics 2013, 14:119 (22 February 2013)
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Transcriptome analyses reveal protein and domain families that delineate stage-related development in the economically important parasitic nematodes, Ostertagia ostertagi and Cooperia oncophora
Esley Heizer, Dante S Zarlenga, Bruce Rosa, Xin Gao, Robin B Gasser, Jessie De Graef, Peter Geldhof, Makedonka Mitreva BMC Genomics 2013, 14:118 (22 February 2013)
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Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
Rafik Neme, Diethard Tautz BMC Genomics 2013, 14:117 (21 February 2013)
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