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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Matthew Kaiser PhD
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Research article
 
Analysis and functional annotation of expressed sequence tags (ESTs) from multiple tissues of oil palm (Elaeis guineensis Jacq.)
Chai-Ling Ho, Yen-Yen Kwan, Mei-Chooi Choi, Sue-Sean Tee, Wai-Har Ng, Kok-Ang Lim, Yang-Ping Lee, Siew-Eng Ooi, Weng-Wah Lee, Jin-Ming Tee, Siang-Hee Tan, Harikrishna Kulaveerasingam, Sharifah Shahrul Rabiah Syed Alwee, Meilina Ong Abdullah
BMC Genomics 2007, 8:381 (22October2007)
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Research article
Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells
Kristin P Bennett, Charles Bergeron, Evrim Acar, Robert F Klees, Scott L Vandenberg, B lent Yener, George E Plopper
BMC Genomics 2007, 8:380 (19October2007)
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Research article
Effects of iron loading on muscle: genome-wide mRNA expression profiling in the mouse
Alejandra Rodriguez, Mika Hilvo, Leena Kyt m ki, Robert E Fleming, Robert S Britton, Bruce R Bacon, Seppo Parkkila
BMC Genomics 2007, 8:379 (19October2007)
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Research article
Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
Simon Minovitsky, Philip Stegmaier, Alexander Kel, Alexey S Kondrashov, Inna Dubchak
BMC Genomics 2007, 8:378 (18October2007)
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Methodology article
Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
Torunn Bruland, Endre Anderssen, Berit Doseth, Hallgeir Bergum, Vidar Beisvag, Astrid L greid
BMC Genomics 2007, 8:377 (18October2007)
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Research article
Intrinsic androgen-dependent gene expression patterns revealed by comparison of genital fibroblasts from normal males and individuals with complete and partial androgen insensitivity syndrome
Paul-Martin Holterhus, Uta Deppe, Ralf Werner, Annette Richter-Unruh, Jan-Hendrik Bebermeier, Lutz Wnsch, Susanne Krege, Hans-Udo Schweikert, Janos Demeter, Felix Riepe, Olaf Hiort, James D Brooks
BMC Genomics 2007, 8:376 (18October2007)
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Research article
A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria
Bjrn Vo , Gregor Gierga, Ilka M Axmann, Wolfgang R Hess
BMC Genomics 2007, 8:375 (17October2007)
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Research article
MetaProm: a neural network based meta-predictor for alternative human promoter prediction
Junwen Wang, Lyle H Ungar, Hung Tseng, Sridhar Hannenhalli
BMC Genomics 2007, 8:374 (17October2007)
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Research article
Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays
Shingo Suzuki, Naoaki Ono, Chikara Furusawa, Akiko Kashiwagi, Tetsuya Yomo
BMC Genomics 2007, 8:373 (16October2007)
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Research article
Sequences conserved by selection across mouse and human malaria species
Hideo Imamura, Jason H Persampieri, Jeffrey H Chuang
BMC Genomics 2007, 8:372 (15October2007)
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Research article
Frame disruptions in human mRNA transcripts, and their relationship with splicing and protein structures
Paul Harrison, Zhan Yu
BMC Genomics 2007, 8:371 (15October2007)
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Research article
The functional genome of CA1 and CA3 neurons under native conditions and in response to ischemia
Dieter Newrzella, Payam S Pahlavan, Carola Krger, Christine Boehm, Oliver Sorgenfrei, Helmut Schrck, Gisela Eisenhardt, Nadine Bischoff, Gerhard Vogt, Oliver Wafzig, Moritz Rossner, Martin H Maurer, Holger Hiemisch, Alfred Bach, Wolfgang Kuschinsky, Armin Schneider
BMC Genomics 2007, 8:370 (15October2007)
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Research article
Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes
Richard A Morton, Brian R Morton
BMC Genomics 2007, 8:369 (12October2007)
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Research article
Global comparative analysis of ESTs from the southern cattle tick, Rhipicephalus (Boophilus) microplus
Minghua Wang, Felix D Guerrero, Geo Pertea, Vishvanath M Nene
BMC Genomics 2007, 8:368 (12October2007)
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Research article
EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues
Karsten Scheibye-Alsing, Susanna Cirera, Michael J Gilchrist, Merete Fredholm, Jan Gorodkin
BMC Genomics 2007, 8:367 (11October2007)
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Research article
Separate base usages of genes located on the leading and lagging strands in Chlamydia muridarum revealed by the Z curve method
Feng-Biao Guo, Xiu-Juan Yu
BMC Genomics 2007, 8:366 (10October2007)
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Research article
Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-freeBMP4 culture
Stephen J Bruce, Brooke B Gardiner, Les J Burke, M Milena Gongora, Sean M Grimmond, Andrew C Perkins
BMC Genomics 2007, 8:365 (10October2007)
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Research article
Identification of genes that regulate multiple cellular processes/responses in the context of lipotoxicity to hepatoma cells
Shireesh Srivastava, Zheng Li, Xuerui Yang, Matthew Yedwabnick, Stephen Shaw, Christina Chan
BMC Genomics 2007, 8:364 (9October2007)
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Methodology article
A method for the construction of equalized directional cDNA libraries from hydrolyzed total RNA
Claytus Davis, Zeev Barvish, Inna Gitelman
BMC Genomics 2007, 8:363 (9October2007)
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Research article
Gene profile analysis of osteoblast genes differentially regulated by histone deacetylase inhibitors
Tania M Schroeder, Aswathy K Nair, Rodney Staggs, Anne-Francoise Lamblin, Jennifer J Westendorf
BMC Genomics 2007, 8:362 (9October2007)
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Research article
Fasting induces a biphasic adaptive metabolic response in murine small intestine
Milka Sokolovi , Diederik Wehkamp, Aleksandar Sokolovi, Jacqueline Vermeulen, Lisa A Gilhuijs-Pederson, Rachel IM van Haaften, Yuri Nikolsky, Chris TA Evelo, Antoine HC van Kampen, Theodorus BM Hakvoort, Wouter H Lamers
BMC Genomics 2007, 8:361 (9October2007)
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Research article
Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse transcription
Elena Gogvadze, Crystel Barbisan, Marc-Henri Lebrun, Anton Buzdin
BMC Genomics 2007, 8:360 (8October2007)
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Research article
Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barr and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity
Eduardo N Taboada, Alex van Belkum, Nobuhiro Yuki, Rey R Acedillo, Peggy CR Godschalk, Michiaki Koga, Hubert P Endtz, Michel Gilbert, John HE Nash
BMC Genomics 2007, 8:359 (5October2007)
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Research article
From transcriptome to biological function: environmental stress in an ectothermic vertebrate, the coral reef fish Pomacentrus moluccensis
Karin S Kassahn, Ross H Crozier, Alister C Ward, Glenn Stone, M Julian Caley
BMC Genomics 2007, 8:358 (5October2007)
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Research article
Androgen-induced masculinization in rainbow trout results in a marked dysregulation of early gonadal gene expression profiles
Daniel Baron, Jr me Montfort, Rmi Houlgatte, Alexis Fostier, Yann Guiguen
BMC Genomics 2007, 8:357 (4October2007)
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Research article
Wide diversity in structure and expression profiles among members of the Caenorhabditis elegans globin protein family
David Hoogewijs, Eva Geuens, Sylvia Dewilde, Andy Vierstraete, Luc Moens, Serge Vinogradov, Jacques R Vanfleteren
BMC Genomics 2007, 8:356 (4October2007)
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Research article
Genetic diversity of the obligate intracellular bacterium Chlamydophila pneumoniae by genome-wide analysis of single nucleotide polymorphisms: evidence for highly clonal population structure
Thomas Rattei, Stephan Ott, Michaela Gutacker, Jan Rupp, Matthias Maass, Stefan Schreiber, Werner Solbach, Thierry Wirth, Jens Gieffers
BMC Genomics 2007, 8:355 (4October2007)
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Research article
Expression and water calcium dependence of calcium transporter isoforms in zebrafish gill mitochondrion-rich cells
Bo-Kai Liao, Ang-Ni Deng, Shyh-Chi Chen, Ming-Yi Chou, Pung-Pung Hwang
BMC Genomics 2007, 8:354 (4October2007)
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Research article
Gene expression profiling of long-lived dwarf mice: longevity-associated genes and relationships with diet, gender and aging
William R Swindell
BMC Genomics 2007, 8:353 (3October2007)
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Research article
Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system
Huai-Kuang Tsai, Cindy PC Su, Mei-Yeh J Lu, Ching-Hua Shih, Daryi Wang
BMC Genomics 2007, 8:352 (3October2007)
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Database
SAMMD: Staphylococcus aureus Microarray Meta-Database
Vijayaraj Nagarajan, Mohamed O Elasri
BMC Genomics 2007, 8:351 (2October2007)
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Research article
Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator
Laetitia Houot, Martin Floutier, Benoit Marteyn, Magali Michaut, Antoine Picciocchi, Pierre Legrain, Jean-Christophe Aude, Corinne Cassier-Chauvat, Franck Chauvat
BMC Genomics 2007, 8:350 (2October2007)
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Research article
Comparative genomic analysis of Tropheryma whipplei strains reveals that diversity among clinical isolates is mainly related to the WiSP proteins
My-Van La, Nicolas Crapoulet, Pascal Barbry, Didier Raoult, Patricia Renesto
BMC Genomics 2007, 8:349 (2October2007)
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Research article
RBM6-RBM5 transcription-induced chimeras are differentially expressed in tumours
Ke Wang, Gino Ubriaco, Leslie C Sutherland
BMC Genomics 2007, 8:348 (1October2007)
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Research article
Abundance and functional diversity of riboswitches in microbial communities
Marat D Kazanov, Alexey G Vitreschak, Mikhail S Gelfand
BMC Genomics 2007, 8:347 (1October2007)
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Research article
Characterization of oligopeptide patterns in large protein sets
Anders Bresell, Bengt Persson
BMC Genomics 2007, 8:346 (1October2007)
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Research article
DNA copy number profiles of gastric cancer precursor lesions
Tineke E Buffart, Beatriz Carvalho, Thomas Mons, Rui M Reis, C tia Moutinho, Paula Silva, Nicole CT van Grieken, Michael Vieth, Manfred Stolte, Cornelis JH van de Velde, Evelin Schrock, Anja Matthaei, Bauke Ylstra, Ftima Carneiro, Gerrit A Meijer
BMC Genomics 2007, 8:345 (1October2007)
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Research article
Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection
Neil S Graham, Martin R Broadley, John P Hammond, Philip J White, Sean T May
BMC Genomics 2007, 8:344 (1October2007)
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Research article
The complete mitochondrial genome of the sea spider Achelia bituberculata (Pycnogonida, Ammotheidae): arthropod ground pattern of gene arrangement
Shin-Ju Park, Yong-Seok Lee, Ui Wook Hwang
BMC Genomics 2007, 8:343 (1October2007)
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Research article
Characterizing partial AZFc deletions of the Y chromosome with amplicon-specific sequence markers
Paulo Navarro-Costa, Lu sa Pereira, Cntia Alves, Leonor Gusm o, Carmen Proen a, Pedro Marques-Vidal, Tiago Rocha, S nia C Correia, Snia Jorge, Antnio Neves, Ana P Soares, Joaquim Nunes, Carlos Calhaz-Jorge, Antnio Amorim, Carlos E Plancha, Joo Gonalves
BMC Genomics 2007, 8:342 (28September2007)
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Database
Collembase: a repository for springtail genomics and soil quality assessment
Martijn JTN Timmermans, Muriel E de Boer, Benjamin Nota, Tjalf E de Boer, Janine Mari n, Rene M Klein-Lankhorst, Nico M van Straalen, Dick Roelofs
BMC Genomics 2007, 8:341 (27September2007)
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Research article
Comparison of the contributions of the nuclear and cytoplasmic compartments to global gene expression in human cells
Roger A Barthelson, Georgina M Lambert, Cheryl Vanier, Ronald M Lynch, David W Galbraith
BMC Genomics 2007, 8:340 (25September2007)
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Research article
Interspecies hybridization on DNA resequencing microarrays: efficiency of sequence recovery and accuracy of SNP detection in human, ape, and codfish mitochondrial DNA genomes sequenced on a human-specific MitoChip
Sarah MC Flynn, Steven M Carr
BMC Genomics 2007, 8:339 (25September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
The G protein-coupled receptor subset of the rat genome
David E Gloriam, Robert Fredriksson, Helgi B Schith
BMC Genomics 2007, 8:338 (25September2007)
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Research article
Identification of proteins involved in the functioning of Riftia pachyptila symbiosis by Subtractive Suppression Hybridization
Sophie Sanchez, Stphane Hourdez, Franois H Lallier
BMC Genomics 2007, 8:337 (24September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Sample matching by inferred agonal stress in gene expression analyses of the brain
Jun Z Li, Fan Meng, Larisa Tsavaler, Simon J Evans, Prabhakara V Choudary, Hiroaki Tomita, Marquis P Vawter, David Walsh, Vida Shokoohi, Tisha Chung, William E Bunney, Edward G Jones, Huda Akil, Stanley J Watson, Richard M Myers
BMC Genomics 2007, 8:336 (24September2007)
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Research article
Multiple splice variants within the bovine silver homologue (SILV) gene affecting coat color in cattle indicate a function additional to fibril formation in melanophores
Christa Kuehn, Rosemarie Weikard
BMC Genomics 2007, 8:335 (24September2007)
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Research article
Gene discovery and transcript analyses in the corn smut pathogen Ustilago maydis: expressed sequence tag and genome sequence comparison
Eric CH Ho, Matt J Cahill, Barry J Saville
BMC Genomics 2007, 8:334 (24September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Deep analysis of cellular transcriptomes  LongSAGE versus classic MPSS
Lawrence Hene, Vattipally B Sreenu, Mai T Vuong, S Hussain I Abidi, Julian K Sutton, Sarah L Rowland-Jones, Simon J Davis, Edward J Evans
BMC Genomics 2007, 8:333 (24September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] [1 comment]
Research article
Unravelling the hidden heterogeneities of diffuse large B-cell lymphoma based on coupled two-way clustering
Wei Zhang, Li Li, Xia Li, Wei Jiang, Jianmin Huo, Yadong Wang, Meihua Lin, Shaoqi Rao
BMC Genomics 2007, 8:332 (22September2007)
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Research article
Integrated analysis of independent gene expression microarray datasets improves the predictability of breast cancer outcome
Zhe Zhang, Dechang Chen, David A Fenstermacher
BMC Genomics 2007, 8:331 (20September2007)
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Research article
Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing
Jessica A Schlueter, Jer-Young Lin, Shannon D Schlueter, Iryna F Vasylenko-Sanders, Shweta Deshpande, Jing Yi, Majesta O'Bleness, Bruce A Roe, Rex T Nelson, Brian E Scheffler, Scott A Jackson, Randy C Shoemaker
BMC Genomics 2007, 8:330 (19September2007)
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Methodology article
Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3 -specific microarray
Xujing Wang, Shuang Jia, Lisa Meyer, Maryam B Yassai, Yuri N Naumov, Jack Gorski, Martin J Hessner
BMC Genomics 2007, 8:329 (19September2007)
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Research article
Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss)
Mohamed Salem, Jeff Silverstein, Caird E Rexroad III, Jianbo Yao
BMC Genomics 2007, 8:328 (19September2007)
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Research article
The cys-loop ligand-gated ion channel gene superfamily of the red flour beetle, Tribolium castaneum
Andrew K Jones, David B Sattelle
BMC Genomics 2007, 8:327 (19September2007)
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Research article
Analysis of the immune-inducible transcriptome from microbial stress resistant, rat-tailed maggots of the drone fly Eristalis tenax
Boran Altincicek, Andreas Vilcinskas
BMC Genomics 2007, 8:326 (17September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
Research article
Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
Mikko Arvas, Teemu Kivioja, Alex Mitchell, Markku Saloheimo, David Ussery, Merja Penttila, Stephen Oliver
BMC Genomics 2007, 8:325 (17September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
The nicotinic acetylcholine receptor gene family of the silkworm, Bombyx mori
Ya-Ming Shao, Ke Dong, Chuan-Xi Zhang
BMC Genomics 2007, 8:324 (15September2007)
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Research article
Adaptive expression responses in the Pol- null strain of S. pombe depleted of mitochondrial genome
Zhaoqing Chu, Juntao Li, Majid Eshaghi, R Krishna Murthy Karuturi, Kui Lin, Jianhua Liu
BMC Genomics 2007, 8:323 (15September2007)
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Methodology article
ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation
Jennifer A McCann, Enrique M Muro, Claire Palmer, Gareth Palidwor, Christopher J Porter, Miguel A Andrade-Navarro, Michael A Rudnicki
BMC Genomics 2007, 8:322 (14September2007)
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Methodology article
Optical mapping as a routine tool for bacterial genome sequence finishing
Phil Latreille, Stacie Norton, Barry S Goldman, John Henkhaus, Nancy Miller, Brad Barbazuk, Helge B Bode, Creg Darby, Zijin Du, Steve Forst, Sophie Gaudriault, Brad Goodner, Heidi Goodrich-Blair, Steven Slater
BMC Genomics 2007, 8:321 (14September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns
Jackie Dolan, Karen Walshe, Samantha Alsbury, Karsten Hokamp, Sean O'Keeffe, Tatsuya Okafuji, Suzanne FC Miller, Guy Tear, Kevin J Mitchell
BMC Genomics 2007, 8:320 (14September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] [1 comment]
Research article
A Marfan syndrome gene expression phenotype in cultured skin fibroblasts
Zizhen Yao, Jochen C Jaeger, Walter L Ruzzo, Cecile Z Morale, Mary Emond, Uta Francke, Dianna M Milewicz, Stephen M Schwartz, Eileen R Mulvihill
BMC Genomics 2007, 8:319 (12September2007)
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Research article
Alternative splicing of TGF-betas and their high-affinity receptors TRI, TRII and TRIII (betaglycan) reveal new variants in human prostatic cells
Lutz Konrad, Jonas A Scheiber, Elke Vlck-Badouin, Marcel M Keilani, Leslie Laible, Heidrun Brandt, Ansgar Schmidt, Gerhard Aumller, Rainer Hofmann
BMC Genomics 2007, 8:318 (11September2007)
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Research article
Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni
Simone Hoegg, Jeffrey L Boore, Jennifer V Kuehl, Axel Meyer
BMC Genomics 2007, 8:317 (10September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] [1 comment]
Research article
Detection of RNA structures in porcine EST data and related mammals
Stefan E Seemann, Michael J Gilchrist, Ivo L Hofacker, Peter F Stadler, Jan Gorodkin
BMC Genomics 2007, 8:316 (10September2007)
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Research article
Giant panda BAC library construction and assembly of a 650-kb contig spanning major histocompatibility complex class II region
Chang-Jun Zeng, Hui-Juan Pan, Shao-Bin Gong, Jian-Qiu Yu, Qiu-Hong Wan, Sheng-Guo Fang
BMC Genomics 2007, 8:315 (8September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
End-sequencing and characterization of silkworm (Bombyx mori) bacterial artificial chromosome libraries
Yoshitaka Suetsugu, Hiroshi Minami, Michihiko Shimomura, Shun-ichi Sasanuma, Junko Narukawa, Kazuei Mita, Kimiko Yamamoto
BMC Genomics 2007, 8:314 (7September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Characterization of the equine 2'-5' oligoadenylate synthetase 1 (OAS1) and ribonuclease L (RNASEL) innate immunity genes
Jonathan J Rios, Andrey A Perelygin, Maureen T Long, Teri L Lear, Andrey A Zharkikh, Margo A Brinton, David L Adelson
BMC Genomics 2007, 8:313 (7September2007)
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Research article
Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications
Nicol Siegel, Simone Hoegg, Walter Salzburger, Ingo Braasch, Axel Meyer
BMC Genomics 2007, 8:312 (6September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus
Shoba Ranganathan, Shivashankar H Nagaraj, Min Hu, Christina Strube, Thomas Schnieder, Robin B Gasser
BMC Genomics 2007, 8:311 (5September2007)
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Research article
High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly
Aparna Prasad, Thomas Schiex, Stephanie McKay, Brenda Murdoch, Zhiquan Wang, James E Womack, Paul Stothard, Stephen S Moore
BMC Genomics 2007, 8:310 (4September2007)
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Research article
The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe
Diego Miranda-Saavedra, Michael JR Stark, Jeremy C Packer, Christian P Vivares, Christian Doerig, Geoffrey J Barton
BMC Genomics 2007, 8:309 (4September2007)
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Research article
Architecture of Burkholderia cepacia complex  70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability
Aymeric Menard, Paulina Estrada de los Santos, Arnault Graindorge, Benoit Cournoyer
BMC Genomics 2007, 8:308 (4September2007)
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Research article
Living with an imperfect cell wall: compensation of femAB inactivation in Staphylococcus aureus
Judith Hbscher, Andrea Jansen, Oliver Kotte, Juliane Schfer, Paul A Majcherczyk, Llinos G Harris, Gabriele Bierbaum, Matthias Heinemann, Brigitte Berger-Bchi
BMC Genomics 2007, 8:307 (4September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
MELOGEN: an EST database for melon functional genomics
Daniel Gonzalez-Ibeas, Jos Blanca, Cristina Roig, Mireia Gonzlez-To, Beln Pic, Vernica Truniger, Pedro Gmez, Wim Deleu, Ana Ca o-Delgado, Pere Ar s, Fernando Nuez, Jordi Garcia-Mas, Pere Puigdom nech, Miguel A Aranda
BMC Genomics 2007, 8:306 (3September2007)
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Research article
Genome-wide genetic aberrations of thymoma using cDNA microarray based comparative genomic hybridization
Gui Youn Lee, Woo Ick Yang, Hei Cheul Jeung, Sang Chul Kim, Min Young Seo, Chan Hee Park, Hyun Cheol Chung, Sun Young Rha
BMC Genomics 2007, 8:305 (3September2007)
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Research article
Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors
Aakash Chawade, Marcus Brutigam, Angelica Lindlf, Olof Olsson, Bjrn Olsson
BMC Genomics 2007, 8:304 (2September2007)
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Research article
Transcriptional profiling of chickpea genes differentially regulated in response to high-salinity, cold and drought
Nitin L Mantri, Rebecca Ford, Tristan E Coram, Edwin CK Pang
BMC Genomics 2007, 8:303 (2September2007)
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Research article
Gene expression profiling reveals different pathways related to Abl and other genes that cooperate with c-Myc in a model of plasma cell neoplasia
Eun Sung Park, John D Shaughnessy Jr, Shalu Gupta, Hongyang Wang, Ju-Seog Lee, Hyun Goo Woo, Fenghuang Zhan, James D Owens Jr, Michael Potter, Siegfried Janz, J Frederic Mushinski
BMC Genomics 2007, 8:302 (31August2007)
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Research article
Glycerate kinase of the hyperthermophilic archaeon Thermoproteus tenax: new insights into the phylogenetic distribution and physiological role of members of the three different glycerate kinase classes
Daniel Kehrer, Hatim Ahmed, Henner Brinkmann, Bettina Siebers
BMC Genomics 2007, 8:301 (31August2007)
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Research article
Exploring the midgut transcriptome of Phlebotomus papatasi: comparative analysis of expression profiles of sugar-fed, blood-fed and Leishmania major-infected sandflies
Marcelo Ramalho-Ortigo, Ryan C Jochim, Jennifer M Anderson, Phillip G Lawyer, Van-My Pham, Shaden Kamhawi, Jesus G Valenzuela
BMC Genomics 2007, 8:300 (30August2007)
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Research article
Genomewide high-density SNP linkage analysis of non-BRCA1/2 breast cancer families identifies various candidate regions and has greater power than microsatellite studies
Anna Gonzalez-Neira, Juan Manuel Rosa-Rosa, Ana Osorio, Emilio Gonzalez, Melissa Southey, Olga Sinilnikova, Henry Lynch, Rogier A Oldenburg, Christi J van Asperen, Nicoline Hoogerbrugge, Guillermo Pita, Peter Devilee, David Goldgar, Javier Benitez
BMC Genomics 2007, 8:299 (30August2007)
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Research article
Revised genomic structure of the human ghrelin gene and identification of novel exons, alternative splice variants and natural antisense transcripts
Inge Seim, Chris Collet, Adrian C Herington, Lisa K Chopin
BMC Genomics 2007, 8:298 (30August2007)
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Research article
Effect of active smoking on the human bronchial epithelium transcriptome
Raj Chari, Kim M Lonergan, Raymond T Ng, Calum MacAulay, Wan L Lam, Stephen Lam
BMC Genomics 2007, 8:297 (29August2007)
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Research article
cis sequence effects on gene expression
Andrew W Bergen, Andrea Baccarelli, Timothy K McDaniel, Kenneth Kuhn, Ruth Pfeiffer, Jerry Kakol, Patrick Bender, Kevin Jacobs, Bernice Packer, Stephen J Chanock, Meredith Yeager
BMC Genomics 2007, 8:296 (29August2007)
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Research article
Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray
Johan Vallon-Christersson, Johan Staaf, Anders Kvist, Patrik Medstrand,  ke Borg, Carlos Rovira
BMC Genomics 2007, 8:295 (29August2007)
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Methodology article
Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton
Jean Muller, Andr Mehlen, Guillaume Vetter, Mikalai Yatskou, Arnaud Muller, Frdric Chalmel, Olivier Poch, Evelyne Friederich, Laurent Vallar
BMC Genomics 2007, 8:294 (29August2007)
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Research article
The mitochondrial DNA control region shows genetically correlated levels of heteroplasmy in leukocytes of centenarians and their offspring
Giuseppina Rose, Giuseppe Passarino, Vittorio Scornaienchi, Giuseppe Romeo, Serena Dato, Dina Bellizzi, Vincenzo Mari, Emidio Feraco, Raffaele Maletta, Amalia Bruni, Claudio Franceschi, Giovanna De Benedictis
BMC Genomics 2007, 8:293 (29August2007)
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Research article
Short-term oleoyl-estrone treatment affects capacity to manage lipids in rat adipose tissue
Anna Salas, Vronique No, Carlos J Ciudad, M Mar Romero, Xavier Remesar, Montserrat Esteve
BMC Genomics 2007, 8:292 (28August2007)
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Research article
Exonization of the LTR transposable elements in human genome
Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John McDonald
BMC Genomics 2007, 8:291 (28August2007)
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Research article
Diverse genome structures of Salmonella paratyphi C
Wei-Qiao Liu, Gui-Rong Liu, Jun-Qian Li, Guo-Min Xu, Danni Qi, Xiao-Yan He, Juan Deng, Feng-Min Zhang, Randal N Johnston, Shu-Lin Liu
BMC Genomics 2007, 8:290 (27August2007)
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Research article
GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization
Vaibhav Vindal, Katta Suma, Akash Ranjan
BMC Genomics 2007, 8:289 (23August2007)
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Research article
A rapid genome-wide response to Drosophila melanogaster social interactions
Ginger E Carney
BMC Genomics 2007, 8:288 (22August2007)
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Research article
Early activation of quorum sensing in Pseudomonas aeruginosa reveals the architecture of a complex regulon
Martin Schuster, E Peter Greenberg
BMC Genomics 2007, 8:287 (22August2007)
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Research article
Quantitative analysis of mutation and selection pressures on base composition skews in bacterial chromosomes
Chi Chen, Carton W Chen
BMC Genomics 2007, 8:286 (21August2007)
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Research article
Genome-wide polysomal analysis of a yeast strain with mutated ribosomal protein S9
Lilach Pnueli, Yoav Arava
BMC Genomics 2007, 8:285 (21August2007)
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Research article
A detailed transcript-level probe annotation reveals alternative splicing based microarray platform differences
Joseph C Lee, David Stiles, Jun Lu, Margaret C Cam
BMC Genomics 2007, 8:284 (20August2007)
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Research article
Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation
Ian Armstead, Lin Huang, Julie King, Helen Ougham, Howard Thomas, Ian King
BMC Genomics 2007, 8:283 (20August2007)
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Methodology article
Optimization of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays; analyzing variations in immune regulator genes of hay-fever samples
Janne Pullat, Robert Fleischer, Nikolaus Becker, Markus Beier, Andres Metspalu, Jrg D Hoheisel
BMC Genomics 2007, 8:282 (17August2007)
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