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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Erik Alexandersson
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Research article
  
Conservation and divergence of microRNAs in Populus
Abdelali Barakat, Phillip K Wall, Scott DiLoreto, Claude W dePamphilis, John E Carlson
BMC Genomics 2007, 8:481 (31December2007)
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Research article
Single nucleotide polymorphisms (SNPs) are highly conserved in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques
Summer L Street, Randall C Kyes, Richard Grant, Betsy Ferguson
BMC Genomics 2007, 8:480 (31December2007)
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Research article
MacroH2A1 knockdown effects on the Peg3 imprinted domain
Jung Ha Choo, Jeong Do Kim, Joomyeong Kim
BMC Genomics 2007, 8:479 (31December2007)
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Research article
A large-scale proteomic analysis of human embryonic stem cells
Thomas C Schulz, Anna Maria Swistowska, Ying Liu, Andrzej Swistowski, Gail Palmarini, Sandii N Brimble, Eric Sherrer, Allan J Robins, Mahendra S Rao, Xianmin Zeng
BMC Genomics 2007, 8:478 (27December2007)
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Research article
Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins
Joseph R Shaw, John K Colbourne, Jennifer C Davey, Stephen P Glaholt, Thomas H Hampton, Celia Y Chen, Carol L Folt, Joshua W Hamilton
BMC Genomics 2007, 8:477 (21December2007)
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Research article
Microarray analysis of iron deficiency chlorosis in near-isogenic soybean lines
Jamie A O'Rourke, Dirk V Charlson, Delkin O Gonzalez, Lila O Vodkin, Michelle A Graham, Silvia R Cianzio, Michael A Grusak, Randy C Shoemaker
BMC Genomics 2007, 8:476 (21December2007)
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Research article
Surviving extreme polar winters by desiccation: clues from Arctic springtail (Onychiurus arcticus) EST libraries
Melody S Clark, Michael AS Thorne, Jelena Pura , Gordana Grubor-Laj i, Michael Kube, Richard Reinhardt, M Roger Worland
BMC Genomics 2007, 8:475 (21December2007)
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Research article
Comparative genomic characterization of citrus-associated Xylella fastidiosa strains
Vivian S da Silva, Cl udio S Shida, Fabiana B Rodrigues, Di genes CD Ribeiro, Alessandra A de Souza, Helv cio D Coletta-Filho, Marcos A Machado, Luiz R Nunes, Regina Costa de Oliveira
BMC Genomics 2007, 8:474 (21December2007)
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Research article
The fungus Ustilago maydis and humans share disease-related proteins that are not found in Saccharomyces cerevisiae
Martin M nsterk tter, Gero Steinberg
BMC Genomics 2007, 8:473 (20December2007)
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Research article
Functional characterization of two novel 5' untranslated exons reveals a complex regulation of NOD2 protein expression
Philip Rosenstiel, Klaus Huse, Andre Franke, Jochen Hampe, Kathrin Reichwald, Cornelia Platzer, Roland G Roberts, Christopher G Mathew, Matthias Platzer, Stefan Schreiber
BMC Genomics 2007, 8:472 (20December2007)
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Database
AphanoDB: a genomic resource for Aphanomyces pathogens
Mohammed-Amine Madoui, Elodie Gaulin, Catherine Math, Hl ne San Clemente, Arnaud Couloux, Patrick Wincker, Bernard Dumas
BMC Genomics 2007, 8:471 (20December2007)
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Research article
Maintenance of transposon-free regions throughout vertebrate evolution
Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
BMC Genomics 2007, 8:470 (20December2007)
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Research article
Rice transposable elements are characterized by various methylation environments in the genome
Miwako Takata, Akihiro Kiyohara, Atsuko Takasu, Yuji Kishima, Hisako Ohtsubo, Yoshio Sano
BMC Genomics 2007, 8:469 (20December2007)
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Research article
Specific elements of the glyoxylate pathway play a significant role in the functional transition of the soybean cotyledon during seedling development
Delkin O Gonzalez, Lila O Vodkin
BMC Genomics 2007, 8:468 (19December2007)
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Research article
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021
Vincent M Ulv, Emeric W Sevin, Anglique Chron, Frdrique Barloy-Hubler
BMC Genomics 2007, 8:467 (19December2007)
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Research article
Serial Analysis of Gene Expression in Plasmodium berghei salivary gland sporozoites
Isabelle Rosinski-Chupin, Thomas Chertemps, Bertrand Boisson, Sylvie Perrot, Emmanuel Bischoff, Jr me Briolay, Pierre Couble, Robert Mnard, Paul Brey, Patricia Baldacci
BMC Genomics 2007, 8:466 (19December2007)
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Research article
Diversity in conserved genes in tomato
Allen Van Deynze, Kevin Stoffel, C Robin Buell, Alexander Kozik, Jia Liu, Esther van der Knaap, David Francis
BMC Genomics 2007, 8:465 (18December2007)
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Research article
Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex
Brian D Eads, John K Colbourne, Elizabeth Bohuski, Justen Andrews
BMC Genomics 2007, 8:464 (18December2007)
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Research article
Mosquito transcriptome changes and filarial worm resistance in Armigeres subalbatus
Matthew T Aliota, Jeremy F Fuchs, George F Mayhew, Cheng-Chen Chen, Bruce M Christensen
BMC Genomics 2007, 8:463 (18December2007)
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Research article
Construction and characterization of an expressed sequenced tag library for the mosquito vector Armigeres subalbatus
George F Mayhew, Lyric C Bartholomay, Hang-Yen Kou, Thomas A Rocheleau, Jeremy F Fuchs, Matthew T Aliota, I-Yu Tsao, Chiung-Yen Huang, Tze-Tze Liu, Kwang-Jen Hsiao, Shih-Feng Tsai, Ueng-Cheng Yang, Nicole T Perna, Wen-Long Cho, Bruce M Christensen, Cheng-Chen Chen
BMC Genomics 2007, 8:462 (18December2007)
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Software
Literature Lab: a method of automated literature interrogation to infer biology from microarray analysis
Phillip G Febbo, Mike G Mulligan, David A Slonina, Kimberly Stegmaier, Dolores Di Vizio, Paul R Martinez, Massimo Loda, Stephen C Taylor
BMC Genomics 2007, 8:461 (18December2007)
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Research article
Denoising inferred functional association networks obtained by gene fusion analysis
Atanas Kamburov, Leon Goldovsky, Shiri Freilich, Aliki Kapazoglou, Victor Kunin, Anton J Enright, Athanasios Tsaftaris, Christos A Ouzounis
BMC Genomics 2007, 8:460 (14December2007)
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Research article
Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters
Nicols Bellora, Domnec Farr, M Mar Alb
BMC Genomics 2007, 8:459 (13December2007)
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Research article
Unravelling the molecular control of calvarial suture fusion in children with craniosynostosis
Anna K Coussens, Christopher R Wilkinson, Ian P Hughes, C Phillip Morris, Angela van Daal, Peter J Anderson, Barry C Powell
BMC Genomics 2007, 8:458 (12December2007)
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Research article
In silico and in vitro comparative analysis to select, validate and test SNPs for human identification
Emiliano Giardina, Ilenia Pietrangeli, Claudia Martone, Paola Asili, Irene Predazzi, Patrizio Marsala, Luciano Gabriele, Claudio Pipolo, Omero Ricci, Gianluca Solla, Luca Sineo, Aldo Spinella, Giuseppe Novelli
BMC Genomics 2007, 8:457 (12December2007)
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Research article
Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses
Adam Monier, Jean-Michel Claverie, Hiroyuki Ogata
BMC Genomics 2007, 8:456 (10December2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central] [1 comment]
Research article
Gene expression and biological processes influenced by deletion of Stat3 in pulmonary type II epithelial cells
Yan Xu, Machiko Ikegami, Yanhua Wang, Yohei Matsuzaki, Jeffrey A Whitsett
BMC Genomics 2007, 8:455 (10December2007)
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Research article
Variable sexually dimorphic gene expression in laboratory strains of Drosophila melanogaster
Dean A Baker, Lisa A Meadows, Jing Wang, Julian AT Dow, Steven Russell
BMC Genomics 2007, 8:454 (10December2007)
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Research article
The plasticizer butyl benzyl phthalate induces genomic changes in rat mammary gland after neonatal/prepubertal exposure
Raquel Moral, Richard Wang, Irma H Russo, Daniel A Mailo, Coral A Lamartiniere, Jose Russo
BMC Genomics 2007, 8:453 (6December2007)
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Research article
Gene expression analysis reveals early changes in several molecular pathways in cerebral malaria-susceptible mice versus cerebral malaria-resistant mice
Nicolas F Delahaye, Nicolas Coltel, Denis Puthier, Mathieu Barbier, Philippe Benech, Florence Joly, Fuad A Iraqi, Georges E Grau, Catherine Nguyen, Pascal Rihet
BMC Genomics 2007, 8:452 (6December2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Continuous exposure to Plasmodium results in decreased susceptibility and transcriptomic divergence of the Anopheles gambiae immune system
Ruth Aguilar, Suchismita Das, Yuemei Dong, George Dimopoulos
BMC Genomics 2007, 8:451 (5December2007)
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Research article
Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance
Fanny Ramel, Ccile Sulmon, Francisco Cabello-Hurtado, Ludivine Taconnat, Marie-Laure Martin-Magniette, Jean-Pierre Renou, Abdelhak El Amrani, Ivan Coue, Gwenola Gouesbet
BMC Genomics 2007, 8:450 (5December2007)
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Research article
Impact of light on Hypocrea jecorina and the multiple cellular roles of ENVOY in this process
Andr Schuster, Christian P Kubicek, Martina A Friedl, Irina S Druzhinina, Monika Schmoll
BMC Genomics 2007, 8:449 (4December2007)
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Research article
Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones
Tokihiko Nanjo, Tetsuya Sakurai, Yasushi Totoki, Atsushi Toyoda, Mitsuru Nishiguchi, Tomoyuki Kado, Tomohiro Igasaki, Norihiro Futamura, Motoaki Seki, Yoshiyuki Sakaki, Kazuo Shinozaki, Kenji Shinohara
BMC Genomics 2007, 8:448 (3December2007)
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Research article
Discovery of novel alternatively spliced C. elegans transcripts by computational analysis of SAGE data
Peter Ruzanov, Steven J Jones, Donald L Riddle
BMC Genomics 2007, 8:447 (30November2007)
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Methodology article
Restriction Landmark Genomic Scanning (RLGS) spot identification by second generation virtual RLGS in multiple genomes with multiple enzyme combinations
Dominic J Smiraglia, Ramakrishnan Kazhiyur-Mannar, Christopher C Oakes, Yue-Zhong Wu, Ping Liang, Tahmina Ansari, Jian Su, Laura J Rush, Laura T Smith, Li Yu, Chunhui Liu, Zunyan Dai, Shih-Shih Chen, Shu-Huei Wang, Joseph Costello, Ilya Ioshikhes, David W Dawson, Jason S Hong, Michael A Teitell, Angela Szafranek, Marta Camoriano, Fei Song, Rosemary Elliott, William Held, Jacquetta M Trasler, Christoph Plass, Rephael Wenger
BMC Genomics 2007, 8:446 (30November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Computational prediction and experimental validation of Ciona intestinalis microRNA genes
Trina M Norden-Krichmar, Janette Holtz, Amy E Pasquinelli, Terry Gaasterland
BMC Genomics 2007, 8:445 (29November2007)
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Research article
Codon-triplet context unveils unique features of the Candida albicans protein coding genome
Gabriela R Moura, Jos P Lousado, Miguel Pinheiro, Laura Carreto, Raquel M Silva, Jos L Oliveira, Manuel AS Santos
BMC Genomics 2007, 8:444 (29November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
X-chromosome tiling path array detection of copy number variants in patients with chromosome X-linked mental retardation
I Madrigal, L Rodr guez-Revenga, L Armengol, E Gonzlez, B Rodriguez, C Badenas, A Snchez, F Martnez, M Guitart, I Fernndez, JA Arranz, MI Tejada, LA Prez-Jurado, X Estivill, M Mil
BMC Genomics 2007, 8:443 (29November2007)
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Research article
Comparison of Genomes of Three Xanthomonas oryzae Bacteriophages
Chia-Ni Lee, Rouh-Mei Hu, Teh-Yuan Chow, Juey-Wen Lin, Hui-Yi Chen, Yi-Hsiung Tseng, Shu-Fen Weng
BMC Genomics 2007, 8:442 (29November2007)
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Database
TFCONES: A database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements
Alison P Lee, Yuchen Yang, Sydney Brenner, Byrappa Venkatesh
BMC Genomics 2007, 8:441 (29November2007)
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Research article
Genome-wide changes in expression profile of murine endogenous retroviruses (MuERVs) in distant organs after burn injury
Young-Kwan Lee, Alex Chew, Lauren Fitzsimon, Rita Thomas, David Greenhalgh, Kiho Cho
BMC Genomics 2007, 8:440 (28November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Database
Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets
Claude Chelala, Stephan A Hahn, Hannah J Whiteman, Sayka Barry, Deepak Hariharan, Tomasz P Radon, Nicholas R Lemoine, Tatjana Crnogorac-Jurcevic
BMC Genomics 2007, 8:439 (28November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Dynamic gene expression in fish muscle during recovery growth induced by a fasting-refeeding schedule
Pierre-Yves Rescan, Jerome Montfort, Ccile Rallire, Aurlie Le Cam, Diane Esquerr, Karine Hugot
BMC Genomics 2007, 8:438 (28November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Bioinformatic evaluation of L-arginine catabolic pathways in 24 cyanobacteria and transcriptional analysis of genes encoding enzymes of L-arginine catabolism in the cyanobacterium Synechocystis sp. PCC 6803
Sarah Schriek, Christian Rckert, Dorothee Staiger, Elfriede K Pistorius, Klaus-Peter Michel
BMC Genomics 2007, 8:437 (28November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment]
Research article
Characterization of Smoc-1 uncovers two transcript variants showing differential tissue and age specific expression in Bubalus bubalis
Jyoti Srivastava, Sanjay Premi, Sudhir Kumar, Iqbal Parwez, Sher Ali
BMC Genomics 2007, 8:436 (28November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Comparative analysis of cyanobacterial superoxide dismutases to discriminate canonical forms
Balakrishnan Priya, Jagadeesan Premanandh, Raman T Dhanalakshmi, Thangaraj Seethalakshmi, Lakshmanan Uma, Dharmar Prabaharan, Gopalakrishnan Subramanian
BMC Genomics 2007, 8:435 (27November2007)
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Research article
The TriTryp Phosphatome: analysis of the protein phosphatase catalytic domains
Rachel Brenchley, Humera Tariq, Helen McElhinney, Balzs Sz r, Julie Huxley-Jones, Robert Stevens, Keith Matthews, Lydia Tabernero
BMC Genomics 2007, 8:434 (26November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Differential gene expression profile in pig adipose tissue treated with/without clenbuterol
Jin Zhang, Qiang He, Qiu Y Liu, Wei Guo, Xue M Deng, Wei W Zhang, Xiao X Hu, Ning Li
BMC Genomics 2007, 8:433 (26November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Evolutionary consequences of a large duplication event in Trypanosoma brucei: Chromosomes 4 and 8 are partial duplicons
Andrew P Jackson
BMC Genomics 2007, 8:432 (23November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Expression profiling on soybean leaves reveals integration of ER- and osmotic-stress pathways
Andr ST Irsigler, Maximiller DL Costa, Ping Zhang, Pedro AB Reis, Ralph E Dewey, Rebecca S Boston, Elizabeth PB Fontes
BMC Genomics 2007, 8:431 (23November2007)
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Methodology article
A set of genes previously implicated in the hypoxia response might be an important modulator in the rat ear tissue response to mechanical stretch
Vishal Saxena, Dennis Orgill, Isaac Kohane
BMC Genomics 2007, 8:430 (23November2007)
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Research article
Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development
Laurent G Deluc, Jrme Grimplet, Matthew D Wheatley, Richard L Tillett, David R Quilici, Craig Osborne, David A Schooley, Karen A Schlauch, John C Cushman, Grant R Cramer
BMC Genomics 2007, 8:429 (22November2007)
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Research article
Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vraison
Stefania Pilati, Michele Perazzolli, Andrea Malossini, Alessandro Cestaro, Lorenzo Dematt, Paolo Fontana, Antonio Dal Ri, Roberto Viola, Riccardo Velasco, Claudio Moser
BMC Genomics 2007, 8:428 (22November2007)
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Research article
Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
Ji Macas, Pavel Neumann, Alice Navrtilov
BMC Genomics 2007, 8:427 (21November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Database
e-Fungi: a data resource for comparative analysis of fungal genomes
Cornelia Hedeler, Han Min Wong, Michael J Cornell, Intikhab Alam, Darren M Soanes, Magnus Rattray, Simon J Hubbard, Nicholas J Talbot, Stephen G Oliver, Norman W Paton
BMC Genomics 2007, 8:426 (20November2007)
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Research article
Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome
Teresia J Buza, Fiona M McCarthy, Shane C Burgess
BMC Genomics 2007, 8:425 (19November2007)
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Research article
High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology
Diego Lijavetzky, Jos Antonio Cabezas, Ana Ib ez, Virginia Rodrguez, Jos M Martnez-Zapater
BMC Genomics 2007, 8:424 (19November2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design
John S Ramsey, Alex CC Wilson, Martin de Vos, Qi Sun, Cecilia Tamborindeguy, Agnese Winfield, Gaynor Malloch, Dawn M Smith, Brian Fenton, Stewart M Gray, Georg Jander
BMC Genomics 2007, 8:423 (16 |
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