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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Matthew Kaiser PhD
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Research article
  
Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase
Olaf Brockmann-Gretza, J rn Kalinowski
BMC Genomics 2006, 7:230 (8September2006)
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Database
AgBase: a functional genomics resource for agriculture
Fiona M McCarthy, Nan Wang, G Bryce Magee, Bindu Nanduri, Mark L Lawrence, Evelyn B Camon, Daniel G Barrell, David P Hill, Mary E Dolan, W Paul Williams, Dawn S Luthe, Susan M Bridges, Shane C Burgess
BMC Genomics 2006, 7:229 (8September2006)
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Research article
Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts
Claudia M Romero, David DeShazer, Tamara Feldblyum, Jacques Ravel, Donald Woods, H Stanley Kim, Yan Yu, Catherine M Ronning, William C Nierman
BMC Genomics 2006, 7:228 (5September2006)
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Research article
Genomic organization and evolution of the ULBP genes in cattle
Joshua H Larson, Brandy M Marron, Jonathan E Beever, Bruce A Roe, Harris A Lewin
BMC Genomics 2006, 7:227 (5September2006)
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Research article
High degree of conservancy among secreted salivary gland proteins from two geographically distant Phlebotomus duboscqi sandflies populations (Mali and Kenya)
Hirotomo Kato, Jennifer M Anderson, Shaden Kamhawi, Fabiano Oliveira, Phillip G Lawyer, Van My Pham, Constance Souko Sangare, Sibiry Samake, Ibrahim Sissoko, Mark Garfield, Lucie Sigutova, Petr Volf, Seydou Doumbia, Jesus G Valenzuela
BMC Genomics 2006, 7:226 (4September2006)
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Research article
Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa
Harshavardhan Doddapaneni, Jiqiang Yao, Hong Lin, M Andrew Walker, Edwin L Civerolo
BMC Genomics 2006, 7:225 (1September2006)
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Research article
Development and validation of a bovine macrophage specific cDNA microarray
Kirsty Jensen, Richard Talbot, Edith Paxton, David Waddington, Elizabeth J Glass
BMC Genomics 2006, 7:224 (1September2006)
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Research article
MAP-ping genomic organization and organ-specific expression profiles of poplar MAP kinases and MAP kinase kinases
Marie-Claude Nicole, Louis-Philippe Hamel, Marie-Jos e Morency, Nathalie Beaudoin, Brian E Ellis, Armand Sguin
BMC Genomics 2006, 7:223 (31August2006)
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Research article
Complete plastid genome sequence of Daucus carota: Implications for biotechnology and phylogeny of angiosperms
Tracey Ruhlman, Seung-Bum Lee, Robert K Jansen, Jessica B Hostetler, Luke J Tallon, Christopher D Town, Henry Daniell
BMC Genomics 2006, 7:222 (31August2006)
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Methodology article
Artificial ants deposit pheromone to search for regulatory DNA elements
Yunlong Liu, Hiroki Yokota
BMC Genomics 2006, 7:221 (30August2006)
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Research article
Gene expression profiling of chicken primordial germ cell ESTs
Jae Yong Han, Tae Sub Park, Jin Nam Kim, Mi A Kim, Dajeong Lim, Jeong Mook Lim, Heebal Kim
BMC Genomics 2006, 7:220 (30August2006)
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Research article
Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution
Jeramiah J Smith, S Randal Voss
BMC Genomics 2006, 7:219 (29August2006)
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Research article
The use of comparative genomic hybridization to characterize genome dynamics and diversity among the serotypes of Shigella
Junping Peng, Xiaobing Zhang, Jian Yang, Jing Wang, E Yang, Wen Bin, Candong Wei, Meisheng Sun, Qi Jin
BMC Genomics 2006, 7:218 (29August2006)
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Research article
Transcriptome profiling of human hepatocytes treated with Aroclor 1254 reveals transcription factor regulatory networks and clusters of regulated genes
Susanne Reymann, J rgen Borlak
BMC Genomics 2006, 7:217 (26August2006)
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Research article
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
Robert Pinard, Alex de Winter, Gary J Sarkis, Mark B Gerstein, Karrie R Tartaro, Ramona N Plant, Michael Egholm, Jonathan M Rothberg, John H Leamon
BMC Genomics 2006, 7:216 (23August2006)
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Research article
Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression
Lin Tang, Xiao Liu, Neil D Clarke
BMC Genomics 2006, 7:215 (22August2006)
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Research article
P elements and MITE relatives in the whole genome sequence of Anopheles gambiae
Hadi Quesneville, Danielle Nouaud, Dominique Anxolabh re
BMC Genomics 2006, 7:214 (18August2006)
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Research article
Strand bias in complementary single-nucleotide polymorphisms of transcribed human sequences: evidence for functional effects of synonymous polymorphisms
Hui-Qi Qu, Steve G Lawrence, Fan Guo, Jacek Majewski, Constantin Polychronakos
BMC Genomics 2006, 7:213 (17August2006)
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Research article
A murine specific expansion of the Rhox cluster involved in embryonic stem cell biology is under natural selection
Melany Jackson, Alistair J Watt, Philippe Gautier, Derek Gilchrist, Johanna Driehaus, Gerard J Graham, Jon Keebler, Franck Prugnolle, Philip Awadalla, Lesley M Forrester
BMC Genomics 2006, 7:212 (17August2006)
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Research article
Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity
Gernot Glckner, Ulrike Schulte-Spechtel, Markus Schilhabel, Marius Felder, Jrgen Shnel, Bettina Wilske, Matthias Platzer
BMC Genomics 2006, 7:211 (16August2006)
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Research article
Genome-wide gene expression profiling of human mast cells stimulated by IgE or Fc RI-aggregation reveals a complex network of genes involved in inflammatory responses
Manikandan Jayapal, Hwee Kee Tay, Renji Reghunathan, Liang Zhi, Kah Kiong Chow, Mary Rauff, Alirio J Melendez
BMC Genomics 2006, 7:210 (16August2006)
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Research article
Identification of the ancestral killer immunoglobulin-like receptor gene in primates
Jennifer G Sambrook, Arman Bashirova, Hanne Andersen, Mike Piatak, George S Vernikos, Penny Coggill, Jeff D Lifson, Mary Carrington, Stephan Beck
BMC Genomics 2006, 7:209 (15August2006)
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Research article
Cell organisation, sulphur metabolism and ion transport-related genes are differentially expressed in Paracoccidioides brasiliensis mycelium and yeast cells
Ros ngela V Andrade, Hugo C Paes, Andr M Nicola, Maria Jos A de Carvalho, Ana L cia Fachin, Renato S Cardoso, Simoneide S Silva, Larissa Fernandes, Silvana P Silva, Eduardo A Donadi, Elza T Sakamoto-Hojo, Geraldo AS Passos, Clia MA Soares, Marcelo M Br gido, Maria Sueli S Felipe
BMC Genomics 2006, 7:208 (14August2006)
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Research article
A general pipeline for the development of anchor markers for comparative genomics in plants
Jakob Fredslund, Lene H Madsen, Birgit K Hougaard, Anna Marie Nielsen, David Bertioli, Niels Sandal, Jens Stougaard, Leif Schauser
BMC Genomics 2006, 7:207 (14August2006)
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Research article
A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits
Peter Wenzl, Haobing Li, Jason Carling, Meixue Zhou, Harsh Raman, Edie Paul, Phillippa Hearnden, Christina Maier, Ling Xia, Vanessa Caig, Jaroslava Ovesn , Mehmet Cakir, David Poulsen, Junping Wang, Rosy Raman, Kevin P Smith, Gary J Muehlbauer, Ken J Chalmers, Andris Kleinhofs, Eric Huttner, Andrzej Kilian
BMC Genomics 2006, 7:206 (12August2006)
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Research article
Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway
Sascha Mormann, Alexander Lmker, Christian Rckert, Lars Gaigalat, Andreas Tauch, Alfred Phler, Jrn Kalinowski
BMC Genomics 2006, 7:205 (10August2006)
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Research article
Identification and analysis of gene families from the duplicated genome of soybean using EST sequences
Rex T Nelson, Randy Shoemaker
BMC Genomics 2006, 7:204 (9August2006)
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Research article
Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (Oncorhynchus mykiss)
Issa Coulibaly, Scott A Gahr, Yniv Palti, Jianbo Yao, Caird E Rexroad III
BMC Genomics 2006, 7:203 (9August2006)
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Research article
Comparative evolutionary genomics of the HADH2 gene encoding A -binding alcohol dehydrogenase/17-hydroxysteroid dehydrogenase type 10 (ABAD/HSD10)
Alexandra T Marques, Agostinho Antunes, Pedro A Fernandes, Maria J Ramos
BMC Genomics 2006, 7:202 (9August2006)
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Research article
Annotation of novel neuropeptide precursors in the migratory locust based on transcript screening of a public EST database and mass spectrometry
Elke Clynen, Jurgen Huybrechts, Peter Verleyen, Arnold De Loof, Liliane Schoofs
BMC Genomics 2006, 7:201 (9August2006)
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Research article
Cross genome comparisons of serine proteases in Arabidopsis and rice
Lokesh P Tripathi, R Sowdhamini
BMC Genomics 2006, 7:200 (9August2006)
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Research article
Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum
Barbara L Hass-Jacobus, Montona Futrell-Griggs, Brian Abernathy, Rick Westerman, Jose-Luis Goicoechea, Joshua Stein, Patricia Klein, Bonnie Hurwitz, Bin Zhou, Fariborz Rakhshan, Abhijit Sanyal, Navdeep Gill, Jer-Young Lin, Jason G Walling, Mei Zhong Luo, Jetty Siva S Ammiraju, Dave Kudrna, Hye Ran Kim, Doreen Ware, Rod A Wing, Phillip San Miguel, Scott A Jackson
BMC Genomics 2006, 7:199 (8August2006)
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Research article
Organization and post-transcriptional processing of focal adhesion kinase gene
Jean-Marc Corsi, Evelyne Rouer, Jean-Antoine Girault, Herv Enslen
BMC Genomics 2006, 7:198 (4August2006)
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Research article
An inventory of mucin genes in the chicken genome shows that the mucin domain of Muc13 is encoded by multiple exons and that ovomucin is part of a locus of related gel-forming mucins
Tiange Lang, Gunnar C Hansson, Tore Samuelsson
BMC Genomics 2006, 7:197 (3August2006)
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Research article
Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries
Marina Govoroun, Florence Le Gac, Yann Guiguen
BMC Genomics 2006, 7:196 (3August2006)
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Research article
Identification and analysis of YELLOW protein family genes in the silkworm, Bombyx mori
Ai-Hua Xia, Qing-Xiang Zhou, Lin-Lin Yu, Wei-Guo Li, Yong-Zhu Yi, Yao-Zhou Zhang, Zhi-Fang Zhang
BMC Genomics 2006, 7:195 (3August2006)
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Research article
High-resolution comparative mapping among man, cattle and mouse suggests a role for repeat sequences in mammalian genome evolution
Laurent Schibler, Anne Roig, Marie-Fran oise Mahe, Pascal Laurent, Hlne Hayes, Franois Rodolphe, Edmond P Cribiu
BMC Genomics 2006, 7:194 (1August2006)
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Research article
Generation, annotation and analysis of ESTs from Trichoderma harzianum CECT 2413
Juan Antonio Vizcano, Francisco Javier Gonzlez, M Beln Surez, Jos Redondo, Julian Heinrich, Jess Delgado-Jarana, Rosa Hermosa, Santiago Gutirrez, Enrique Monte, Antonio Llobell, Manuel Rey
BMC Genomics 2006, 7:193 (27July2006)
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Methodology article
Single nucleotide polymorphism (SNP) discovery in duplicated genomes: intron-primed exon-crossing (IPEC) as a strategy for avoiding amplification of duplicated loci in Atlantic salmon (Salmo salar) and other salmonid fishes
Heikki J Ryyn nen, Craig R Primmer
BMC Genomics 2006, 7:192 (27July2006)
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Research article
Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag-pathogenicity island
S Manjulata Devi, Irshad Ahmed, Aleem A Khan, Syed Asad Rahman, Ayesha Alvi, Leonardo A Sechi, Niyaz Ahmed
BMC Genomics 2006, 7:191 (27July2006)
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Methodology article
A multi-class predictor based on a probabilistic model: application to gene expression profiling-based diagnosis of thyroid tumors
Naoto Yukinawa, Shigeyuki Oba, Kikuya Kato, Kazuya Taniguchi, Kyoko Iwao-Koizumi, Yasuhiro Tamaki, Shinzaburo Noguchi, Shin Ishii
BMC Genomics 2006, 7:190 (27July2006)
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Research article
Conservation of alternative polyadenylation patterns in mammalian genes
Takeshi Ara, Fabrice Lopez, William Ritchie, Philippe Benech, Daniel Gautheret
BMC Genomics 2006, 7:189 (26July2006)
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Research article
The evolving doublecortin (DCX) superfamily
Orly Reiner, Frdric M Coquelle, Bastian Peter, Talia Levy, Anna Kaplan, Tamar Sapir, Irit Orr, Naama Barkai, Gregor Eichele, Sven Bergmann
BMC Genomics 2006, 7:188 (26July2006)
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Research article
Finding function: evaluation methods for functional genomic data
Chad L Myers, Daniel R Barrett, Matthew A Hibbs, Curtis Huttenhower, Olga G Troyanskaya
BMC Genomics 2006, 7:187 (25July2006)
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Research article
Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation
Sabyasachi Das, Sandip Paul, Sumit K Bag, Chitra Dutta
BMC Genomics 2006, 7:186 (25July2006)
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Research article
The pseudo-mitochondrial genome influences mistakes in heteroplasmy interpretation
Ryan L Parr, Jennifer Maki, Brian Reguly, Gabriel D Dakubo, Andrea Aguirre, Roy Wittock, Kerry Robinson, John P Jakupciak, Robert E Thayer
BMC Genomics 2006, 7:185 (21July2006)
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Research article
Analysis of bacteria-challenged wild silkmoth, Antheraea mylitta (lepidoptera) transcriptome reveals potential immune genes
Archana S Gandhe, K P Arunkumar, Serene H John, J Nagaraju
BMC Genomics 2006, 7:184 (21July2006)
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Research article
Thirteen is enough: the myosins of Dictyostelium discoideum and their light chains
Martin Kollmar
BMC Genomics 2006, 7:183 (20July2006)
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Research article
The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda)
Jeffrey L Boore
BMC Genomics 2006, 7:182 (19July2006)
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Research article
Epigenetics of gene expression in human hepatoma cells: expression profiling the response to inhibition of DNA methylation and histone deacetylation
Luke O Dannenberg, Howard J Edenberg
BMC Genomics 2006, 7:181 (19July2006)
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Methodology article
Predicting candidate genes for human deafness disorders: a bioinformatics approach
Rami Alsaber, Christopher J Tabone, Raj P Kandpal
BMC Genomics 2006, 7:180 (19July2006)
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Research article
Association of poly-purine/poly-pyrimidine sequences with meiotic recombination hot spots
Andrew TM Bagshaw, Joel PW Pitt, Neil J Gemmell
BMC Genomics 2006, 7:179 (18July2006)
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Research article
Discovery of quantitative trait loci for resistance to parasitic nematode infection in sheep: I. Analysis of outcross pedigrees
Allan M Crawford, Korena A Paterson, Ken G Dodds, Cristina Diez Tascon, Penny A Williamson, Meredith Roberts Thomson, Stewart A Bisset, Anne E Beattie, Gordon J Greer, Richard S Green, Roger Wheeler, Richard J Shaw, Kevin Knowler, John C McEwan
BMC Genomics 2006, 7:178 (18July2006)
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Research article
Comparative EST analysis provides insights into the basal aquatic fungus Blastocladiella emersonii
Karina F Ribichich, Raphaela C Georg, Suely L Gomes
BMC Genomics 2006, 7:177 (12July2006)
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Research article
Similarities and differences of polyadenylation signals in human and fly
Dorota Retelska, Christian Iseli, Philipp Bucher, C Victor Jongeneel, Felix Naef
BMC Genomics 2006, 7:176 (12July2006)
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Research article
Expression of target and reference genes in Daphnia magna exposed to ibuprofen
Lars-Henrik Heckmann, Richard Connon, Thomas H Hutchinson, Steve J Maund, Richard M Sibly, Amanda Callaghan
BMC Genomics 2006, 7:175 (7July2006)
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Research article
Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs
Nathalie Pavy, Lee S Parsons, Charles Paule, John MacKay, Jean Bousquet
BMC Genomics 2006, 7:174 (6July2006)
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Research article
Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a
Huan Nie, Fan Yang, Xiaobing Zhang, Jian Yang, Lihong Chen, Jing Wang, Zhaohui Xiong, Junping Peng, Lilian Sun, Jie Dong, Ying Xue, Xingye Xu, Shuxia Chen, Zhijian Yao, Yan Shen, Qi Jin
BMC Genomics 2006, 7:173 (6July2006)
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Research article
Gene identification and analysis of transcripts differentially regulated in fracture healing by EST sequencing in the domestic sheep
Jochen Hecht, Heiner Kuhl, Stefan A Haas, Sebastian Bauer, Albert J Poustka, Jasmin Lienau, Hanna Schell, Asita C Stiege, Volkhard Seitz, Richard Reinhardt, Georg N Duda, Stefan Mundlos, Peter N Robinson
BMC Genomics 2006, 7:172 (5July2006)
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Research article
Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species
Boris A Legault, Arantxa Lopez-Lopez, Jose Carlos Alba-Casado, W Ford Doolittle, Henk Bolhuis, Francisco Rodriguez-Valera, R Thane Papke
BMC Genomics 2006, 7:171 (4July2006)
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Research article
Stem-loop structures in prokaryotic genomes
Mauro Petrillo, Giustina Silvestro, Pier Paolo Di Nocera, Angelo Boccia, Giovanni Paolella
BMC Genomics 2006, 7:170 (4July2006)
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Research article
The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity
Henk Bolhuis, Peter Palm, Andy Wende, Michaela Falb, Markus Rampp, Francisco Rodriguez-Valera, Friedhelm Pfeiffer, Dieter Oesterhelt
BMC Genomics 2006, 7:169 (4July2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Seven different genes encode a diverse mixture of isoforms of Bet v 1, the major birch pollen allergen
Martijn F Schenk, Ludovicus JWJ Gilissen, Gerhard D Esselink, Marinus JM Smulders
BMC Genomics 2006, 7:168 (4July2006)
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Research article
Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales)
Radhey S Gupta
BMC Genomics 2006, 7:167 (4July2006)
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Research article
Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data
Huixia Wang, Shuguang Huang, Jianyong Shou, Eric W Su, Jude E Onyia, Birong Liao, Shuyu Li
BMC Genomics 2006, 7:166 (3July2006)
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Research article
Differences in the evolutionary history of disease genes affected by dominant or recessive mutations
Simon J Furney, M Mar Alb , Nria L pez-Bigas
BMC Genomics 2006, 7:165 (3July2006)
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Research article
Bioinformatic discovery of microRNA precursors from human ESTs and introns
Sung-Chou Li, Chao-Yu Pan, Wen-chang Lin
BMC Genomics 2006, 7:164 (3July2006)
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Methodology article
Microarray MAPH: accurate array-based detection of relative copy number in genomic DNA
Brian Gibbons, Parikkhit Datta, Ying Wu, Alan Chan, John AL Armour
BMC Genomics 2006, 7:163 (30June2006)
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Research article
Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles
Richard D Waite, Alberto Paccanaro, Anastasia Papakonstantinopoulou, Jacob M Hurst, Mansoor Saqi, Eddie Littler, Michael A Curtis
BMC Genomics 2006, 7:162 (26June2006)
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Research article
The features of Drosophila core promoters revealed by statistical analysis
Naum I Gershenzon, Edward N Trifonov, Ilya P Ioshikhes
BMC Genomics 2006, 7:161 (21June2006)
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Research article
Gene expression profiling of Spodoptera frugiperda hemocytes and fat body using cDNA microarray reveals polydnavirus-associated variations in lepidopteran host genes transcript levels
M Barat-Houari, F Hilliou, F-X Jousset, L Sofer, E Deleury, J Rocher, M Ravallec, L Galibert, P Delobel, R Feyereisen, P Fournier, A-N Volkoff
BMC Genomics 2006, 7:160 (21June2006)
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Research article
Tissue-specific expression of TRP channel genes in the mouse and its variation in three different mouse strains
Christiane Kunert-Keil, Frederike Bisping, Jana Krger, Heinrich Brinkmeier
BMC Genomics 2006, 7:159 (20June2006)
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Research article
The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants
Joseph Colasanti, Reynald Tremblay, Ada YM Wong, Viktoriya Coneva, Akiko Kozaki, Barbara K Mable
BMC Genomics 2006, 7:158 (19June2006)
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Research article
A microarray analysis of gene expression in the free-living stages of the parasitic nematode Strongyloides ratti
Fiona J Thompson, Gary LA Barker, Louise Hughes, Clare P Wilkes, Jane Coghill, Mark E Viney
BMC Genomics 2006, 7:157 (19June2006)
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Research article
Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms
Bin Chen, Daibin Zhong, Antnia Monteiro
BMC Genomics 2006, 7:156 (17June2006)
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Research article
Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins
Yu-Hui Hu, Hans-Jrg Warnatz, Dominique Vanhecke, Florian Wagner, Andrea Fiebitz, Sabine Thamm, Pascal Kahlem, Hans Lehrach, Marie-Laure Yaspo, Michal Janitz
BMC Genomics 2006, 7:155 (16June2006)
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Research article
An annotated cDNA library of juvenile Euprymna scolopes with and without colonization by the symbiont Vibrio fischeri
Carlene K Chun, Todd E Scheetz, Maria de Fatima Bonaldo, Bartley Brown, Anik Clemens, Wendy J Crookes-Goodson, Keith Crouch, Tad DeMartini, Mari Eyestone, Michael S Goodson, Bernadette Janssens, Jennifer L Kimbell, Tanya A Koropatnick, Tamara Kucaba, Christina Smith, Jennifer J Stewart, Deyan Tong, Joshua V Troll, Sarahrose Webster, Jane Winhall-Rice, Cory Yap, Thomas L Casavant, Margaret J McFall-Ngai, M Bento Soares
BMC Genomics 2006, 7:154 (16June2006)
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Research article
Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression
LanMin Zhang, Sean J Yoder, Steven A Enkemann
BMC Genomics 2006, 7:153 (15June2006)
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Transcriptome analysis of Deinagkistrodon acutus venomous gland focusing on cellular structure and functional aspects using expressed sequence tags
Bing Zhang, Qinghua Liu, Wei Yin, Xiaowei Zhang, Yijun Huang, Yingfeng Luo, Pengxin Qiu, Xingwen Su, Jun Yu, Songnian Hu, Guangmei Yan
BMC Genomics 2006, 7:152 (15June2006)
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In situ origin of deep rooting lineages of mitochondrial Macrohaplogroup 'M' in India
Kumarasamy Thangaraj, Gyaneshwer Chaubey, Vijay Kumar Singh, Ayyasamy Vanniarajan, Ismail Thanseem, Alla G Reddy, Lalji Singh
BMC Genomics 2006, 7:151 (15June2006)
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Software
Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome
Vasily Tcherepanov, Angelika Ehlers, Chris Upton
BMC Genomics 2006, 7:150 (13June2006)
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Wheat EST resources for functional genomics of abiotic stress
Mario Houde, Mahdi Belcaid, Franois Ouellet, Jean Danyluk, Antonio F Monroy, Ani Dryanova, Patrick Gulick, Anne Bergeron, Andr Laroche, Matthew G Links, Luke MacCarthy, William L Crosby, Fathey Sarhan
BMC Genomics 2006, 7:149 (13June2006)
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Research article
Verification of predicted alternatively spliced Wnt genes reveals two new splice variants (CTNNB1 and LRP5) and altered Axin-1 expression during tumour progression
Heike Pospisil, Alexander Herrmann, Kristine Butherus, Stefan Pirson, Jens G Reich, Wolfgang Kemmner
BMC Genomics 2006, 7:148 (13June2006)
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Research article
Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes- a genomic approach
Samadhi Moreno-Campuzano, Sarath Chandra Janga, Ernesto Prez-Rueda
BMC Genomics 2006, 7:147 (13June2006)
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Gene expression profiling in the striatum of inbred mouse strains with distinct opioid-related phenotypes
Michal Korostynski, Dorota Kaminska-Chowaniec, Marcin Piechota, Ryszard Przewlocki
BMC Genomics 2006, 7:146 (13June2006)
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Identification and characterisation of human apoptosis inducing proteins using cell-based transfection microarrays and expression analysis
Ella L Palmer, Andrew D Miller, Tom C Freeman
BMC Genomics 2006, 7:145 (12June2006)
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An alternative method to amplify RNA without loss of signal conservation for expression analysis with a proteinase DNA microarray in the ArrayTube format
Susann Schler, Ingrid Wenz, B Wiederanders, P Slickers, R Ehricht
BMC Genomics 2006, 7:144 (12June2006)
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Quantify single nucleotide polymorphism (SNP) ratio in pooled DNA based on normalized fluorescence real-time PCR
Airong Yu, Haifeng Geng, Xuerui Zhou
BMC Genomics 2006, 7:143 (9June2006)
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Centering, scaling, and transformations: improving the biological information content of metabolomics data
Robert A van den Berg, Huub CJ Hoefsloot, Johan A Westerhuis, Age K Smilde, Mari t J van der Werf
BMC Genomics 2006, 7:142 (8June2006)
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Simple sequence proteins in prokaryotic proteomes
Mekapati Bala Subramanyam, Muthiah Gnanamani, Srinivasan Ramachandran
BMC Genomics 2006, 7:141 (8June2006)
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Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences
George E Liu, Lakshmi K Matukumalli, Tad S Sonstegard, Larry L Shade, Curtis P Van Tassell
BMC Genomics 2006, 7:140 (7June2006)
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Database
LINE FUSION GENES: a database of LINE expression in human genes
Dae-Soo Kim, Tae-Hyung Kim, Jae-Won Huh, Il-Chul Kim, Seok-Won Kim, Hong-Seog Park, Heui-Soo Kim
BMC Genomics 2006, 7:139 (7June2006)
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Large scale copy number variation (CNV) at 14q12 is associated with the presence of genomic abnormalities in neoplasia
Ilan Braude, Bisera Vukovic, Mona Prasad, Paula Marrano, Stefanie Turley, Dwayne Barber, Maria Zielenska, Jeremy A Squire
BMC Genomics 2006, 7:138 (6June2006)
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Comparative genomics and concerted evolution of -tubulin paralogs in Leishmania spp
Andrew P Jackson, Sue Vaughan, Keith Gull
BMC Genomics 2006, 7:137 (6June2006)
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An analysis of intra array repeats: the good, the bad and the non informative
Yedid Elbez, Shlomit Farkash-Amar, Itamar Simon
BMC Genomics 2006, 7:136 (5June2006)
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Methodology article
Acquisition of genome information from single-celled unculturable organisms (radiolaria) by exploiting genome profiling (GP)
Mariko Kouduka, Atsushi Matsuoka, Koichi Nishigaki
BMC Genomics 2006, 7:135 (2June2006)
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Production and utilization of a high-density oligonucleotide microarray in channel catfish, Ictalurus punctatus
Robert W Li, Geoffrey C Waldbieser
BMC Genomics 2006, 7:134 (1June2006)
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Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes
Paz Polak, Eytan Domany
BMC Genomics 2006, 7:133 (1June2006)
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Database
CMD: a Cotton Microsatellite Database resource for Gossypium genomics
Anna Blenda, Jodi Scheffler, Brian Scheffler, Michael Palmer, Jean-Marc Lacape, John Z Yu, Christopher Jesudurai, Sook Jung, Sriram Muthukumar, Preetham Yellambalase, Stephen Ficklin, Margaret Staton, Robert Eshelman, Mauricio Ulloa, Sukumar Saha, Ben Burr, Shaolin Liu, Tianzhen Zhang, Deqiu Fang, Alan Pepper, Siva Kumpatla, John Jacobs, Jeff Tomkins, Roy Cantrell, Dorrie Main
BMC Genomics 2006, 7:132 (31May2006)
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Methodology article
Differentially profiling the low-expression transcriptomes of human hepatoma using a novel SSH/microarray approach
Yi-Shin Pan, Yun-Shien Lee, Yung-Lin Lee, Wei-Chen Lee, Sen-Yung Hsieh
BMC Genomics 2006, 7:131 (31May2006)
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