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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Matthew Kaiser PhD
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Research article
  
Comparison of gene expression signatures of diamide, H2O2 and menadione exposed Aspergillus nidulans cultures  linking genome-wide transcriptional changes to cellular physiology
Istv n P csi, Mrton Miskei, Zsolt Karnyi, Tams Emri, Patricia Ayoubi, T nde Pusztahelyi, Gy rgy Balla, Rolf A Prade
BMC Genomics 2005, 6:182 (20December2005)
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Commentary
Sal-Site: Integrating new and existing ambystomatid salamander research and informational resources
Jeramiah J Smith, Srikrishna Putta, John A Walker, D Kevin Kump, Amy K Samuels, James R Monaghan, David W Weisrock, Chuck Staben, S Randal Voss
BMC Genomics 2005, 6:181 (16December2005)
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Research article
A method for accurate detection of genomic microdeletions using real-time quantitative PCR
Rosanna Weksberg, Simon Hughes, Laura Moldovan, Anne S Bassett, Eva WC Chow, Jeremy A Squire
BMC Genomics 2005, 6:180 (13December2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] [1 comment]
Research article
Comparative genome analysis reveals a conserved family of actin-like proteins in apicomplexan parasites
Jennifer L Gordon, L David Sibley
BMC Genomics 2005, 6:179 (12December2005)
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Database
GPX-Macrophage Expression Atlas: A database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults
Graeme R Grimes, Stuart Moodie, John S Beattie, Marie Craigon, Paul Dickinson, Thorsten Forster, Andrew D Livingston, Muriel Mewissen, Kevin A Robertson, Alan J Ross, Garwin Sing, Peter Ghazal
BMC Genomics 2005, 6:178 (12December2005)
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Research article
Comparative analysis of programmed cell death pathways in filamentous fungi
Natalie D Fedorova, Jonathan H Badger, Geoff D Robson, Jennifer R Wortman, William C Nierman
BMC Genomics 2005, 6:177 (8December2005)
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Methodology article
ASAP: Amplification, sequencing & annotation of plastomes
Amit Dhingra, Kevin M Folta
BMC Genomics 2005, 6:176 (7December2005)
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Research article
Sequence comparisons of plasmids pBJS-O of Spiroplasma citri and pSKU146 of S. kunkelii: implications for plasmid evolution
Bharat D Joshi, Michael Berg, Janet Rogers, Jacqueline Fletcher, Ulrich Melcher
BMC Genomics 2005, 6:175 (7December2005)
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Research article
Bacterial genome adaptation to niches: Divergence of the potential virulence genes in three Burkholderia species of different survival strategies
H Stanley Kim, Mark A Schell, Yan Yu, Ricky L Ulrich, Saul H Sarria, William C Nierman, David DeShazer
BMC Genomics 2005, 6:174 (7December2005)
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Research article
The odorant receptor repertoire of teleost fish
Tyler S Alioto, John Ngai
BMC Genomics 2005, 6:173 (6December2005)
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Research article
The angiotensin-converting enzyme (ACE) gene family of Anopheles gambiae
Susan Burnham, Judith A Smith, Alison J Lee, R Elwyn Isaac, Alan D Shirras
BMC Genomics 2005, 6:172 (5December2005)
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Research article
An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar)
Heidi Hagen-Larsen, Jon K Laerdahl, Frank Panitz, Alexei Adzhubei, Bj rn Hyheim
BMC Genomics 2005, 6:171 (1December2005)
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Research article
Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
Bart MG Smits, Victor Guryev, Dimphy Zeegers, Dirk Wedekind, Hans J Hedrich, Edwin Cuppen
BMC Genomics 2005, 6:170 (29November2005)
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Research article
The EH1 motif in metazoan transcription factors
Richard R Copley
BMC Genomics 2005, 6:169 (27November2005)
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Research article
Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes
Soohyun Lee, Isaac Kohane, Simon Kasif
BMC Genomics 2005, 6:168 (27November2005)
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Research article
Analysis of vertebrate genomes suggests a new model for clade B serpin evolution
Dion Kaiserman, Phillip I Bird
BMC Genomics 2005, 6:167 (23November2005)
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Methodology article
Characterization of 954 bovine full-CDS cDNA sequences
Gregory P Harhay, Tad S Sonstegard, John W Keele, Michael P Heaton, Michael L Clawson, Warren M Snelling, Ralph T Wiedmann, Curt P Van Tassell, Timothy PL Smith
BMC Genomics 2005, 6:166 (23November2005)
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Research article
Expression and genomic organization of zonadhesin-like genes in three species of fish give insight into the evolutionary history of a mosaic protein
Peter ND Hunt, Michael D Wilson, Kristian R von Schalburg, William S Davidson, Ben F Koop
BMC Genomics 2005, 6:165 (22November2005)
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Research article
Efficient gene-driven germ-line point mutagenesis of C57BL/6J mice
Edward J Michaud, Cymbeline T Culiat, Mitchell L Klebig, Paul E Barker, KT Cain, Debra J Carpenter, Lori L Easter, Carmen M Foster, Alysyn W Gardner, ZY Guo, Kay J Houser, Lori A Hughes, Marilyn K Kerley, Zhaowei Liu, Robert E Olszewski, Irina Pinn, Ginger D Shaw, Sarah G Shinpock, Ann M Wymore, Eugene M Rinchik, Dabney K Johnson
BMC Genomics 2005, 6:164 (21November2005)
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Research article
An acquisition account of genomic islands based on genome signature comparisons
MWJ van Passel, A Bart, HH Thygesen, ACM Luyf, AHC van Kampen, A van der Ende
BMC Genomics 2005, 6:163 (18November2005)
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Research article
Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria
S bastien Rey, Jennifer L Gardy, Fiona SL Brinkman
BMC Genomics 2005, 6:162 (17November2005)
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Research article
Construction and characterization of a genomic BAC library for the Mus m. musculus mouse subspecies (PWD/Ph inbred strain)
Petr Jansa, Petr Divina, Ji  Forejt
BMC Genomics 2005, 6:161 (16November2005)
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Research article
Leveraging human genomic information to identify nonhuman primate sequences for expression array development
Eliot R Spindel, Mark A Pauley, Yibing Jia, Courtney Gravett, Shaun L Thompson, Nicholas F Boyle, Sergio R Ojeda, Robert B Norgren Jr
BMC Genomics 2005, 6:160 (15November2005)
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Research article
Preferential attachment in the evolution of metabolic networks
Sara Light, Per Kraulis, Arne Elofsson
BMC Genomics 2005, 6:159 (10November2005)
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Research article
Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains
Elisa Giuntini, Alessio Mengoni, Carlotta De Filippo, Duccio Cavalieri, Nadia Aubin-Horth, Christian R Landry, Anke Becker, Marco Bazzicalupo
BMC Genomics 2005, 6:158 (10November2005)
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Research article
Genetic mapping of putative Chrna7 and Luzp2 neuronal transcriptional enhancers due to impact of a transgene-insertion and 6.8 Mb deletion in a mouse model of Prader-Willi and Angelman syndromes
Mihaela Stefan, Kathryn C Claiborn, Edyta Stasiek, Jing-Hua Chai, Tohru Ohta, Richard Longnecker, John M Greally, Robert D Nicholls
BMC Genomics 2005, 6:157 (9November2005)
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Research article
The zebrafish progranulin gene family and antisense transcripts
Beno t Cadieux, Babykumari P Chitramuthu, David Baranowski, Hugh PJ Bennett
BMC Genomics 2005, 6:156 (8November2005)
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Methodology article
SSH adequacy to preimplantation mammalian development: Scarce specific transcripts cloning despite irregular normalisation
LC Bui, RD Landri, JP Renard, V Duranthon
BMC Genomics 2005, 6:155 (8November2005)
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Research article
Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni
Thewarach Laha, Nonglack Kewgrai, Alex Loukas, Paul J Brindley
BMC Genomics 2005, 6:154 (4November2005)
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Methodology article
A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example
N Balandraud, P Gouret, EGJ Danchin, M Blanc, D Zinn, J Roudier, P Pontarotti
BMC Genomics 2005, 6:153 (4November2005)
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Research article
A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish
Jennifer G Sambrook, Felipe Figueroa, Stephan Beck
BMC Genomics 2005, 6:152 (4November2005)
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Research article
cGMP-independent nitric oxide signaling and regulation of the cell cycle
Xiaolin Cui, Jianhua Zhang, Penglin Ma, Daniela E Myers, Ilana G Goldberg, Kelly J Sittler, Jennifer J Barb, Peter J Munson, Ana del Pilar Cintron, J Philip McCoy, Shuibang Wang, Robert L Danner
BMC Genomics 2005, 6:151 (3November2005)
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Methodology article
Proposed methods for testing and selecting the ERCC external RNA controls
External RNA Controls Consortium
BMC Genomics 2005, 6:150 (2November2005)
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Research article
SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data
Matthew J Huentelman, David W Craig, Albert D Shieh, Jason J Corneveaux, Diane Hu-Lince, John V Pearson, Dietrich A Stephan
BMC Genomics 2005, 6:149 (31October2005)
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Research article
Specificity and overlap in gene segment-defined antibody repertoires
Ramy A Arnaout
BMC Genomics 2005, 6:148 (28October2005)
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Research article
Limitations of mRNA amplification from small-size cell samples
Vigdis Nygaard, Marit Holden, Anders Lland, Mette Langaas, Ola Myklebost, Eivind Hovig
BMC Genomics 2005, 6:147 (27October2005)
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Research article
Identification of genes involved in Ca2+ ionophore A23187-mediated apoptosis and demonstration of a high susceptibility for transcriptional repression of cell cycle genes in B lymphoblasts from a patient with Scott syndrome
Detlef Kozian, Valrie Proulle, Almut Nitsche, Marie Galitzine, Marie-Carmen Martinez, Beatrice Schumann, Dominique Meyer, Matthias Herrmann, Jean-Marie Freyssinet, Dani le Kerbiriou-Nabias
BMC Genomics 2005, 6:146 (21October2005)
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Software
i-Tracker: For quantitative proteomics using iTRAQ
Ian P Shadforth, Tom PJ Dunkley, Kathryn S Lilley, Conrad Bessant
BMC Genomics 2005, 6:145 (20October2005)
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Research article
Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
Nathalie Pavy, Charles Paule, Lee Parsons, John A Crow, Marie-Josee Morency, Janice Cooke, James E Johnson, Etienne Noumen, Carine Guillet-Claude, Yaron Butterfield, Sarah Barber, George Yang, Jerry Liu, Jeff Stott, Robert Kirkpatrick, Asim Siddiqui, Robert Holt, Marco Marra, Armand Seguin, Ernest Retzel, Jean Bousquet, John MacKay
BMC Genomics 2005, 6:144 (19October2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes
Eric D Brenner, Manpreet S Katari, Dennis W Stevenson, Stephen A Rudd, Andrew W Douglas, Walter N Moss, Richard W Twigg, Suzan J Runko, Giulia M Stellari, WR McCombie, Gloria M Coruzzi
BMC Genomics 2005, 6:143 (15October2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Macrodissection versus microdissection of rectal carcinoma: minor influence of stroma cells to tumor cell gene expression profiles
Elza C de Bruin, Simone van de Pas, Esther H Lips, Ronald van Eijk, Minke MC van der Zee, Marcel Lombaerts, Tom van Wezel, Corrie AM Marijnen, J Han JM van Krieken, Jan Paul Medema, Cornelis JH van de Velde, Paul HC Eilers, Lucy TC Peltenburg
BMC Genomics 2005, 6:142 (14October2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
The stress response against denatured proteins in the deletion of cytosolic chaperones SSA1/2 is different from heat-shock response in Saccharomyces cerevisiae
Rena Matsumoto, Kuniko Akama, Randeep Rakwal, Hitoshi Iwahashi
BMC Genomics 2005, 6:141 (7October2005)
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Research article
The distribution of SNPs in human gene regulatory regions
Yongjian Guo, D Curtis Jamison
BMC Genomics 2005, 6:140 (6October2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
In silico characterization of the family of PARP-like poly(ADP-ribosyl)transferases (pARTs)
Helge Otto, Pedro A Reche, Fernando Bazan, Katharina Dittmar, Friedrich Haag, Friedrich Koch-Nolte
BMC Genomics 2005, 6:139 (4October2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Methodology article
Identification of disease causing loci using an array-based genotyping approach on pooled DNA
David W Craig, Matthew J Huentelman, Diane Hu-Lince, Victoria L Zismann, Michael C Kruer, Anne M Lee, Erik G Puffenberger, John M Pearson, Dietrich A Stephan
BMC Genomics 2005, 6:138 (30September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
A TNF-induced gene expression program under oscillatory NF- B control
Bing Tian, David E Nowak, Allan R Brasier
BMC Genomics 2005, 6:137 (28September2005)
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Research article
Mitochondrial-encoded membrane protein transcripts are pyrimidine-rich while soluble protein transcripts and ribosomal RNA are purine-rich
Patrick C Bradshaw, Anand Rathi, David C Samuels
BMC Genomics 2005, 6:136 (26September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Construction and validation of a Bovine Innate Immune Microarray
Laurelea Donaldson, Tony Vuocolo, Christian Gray, Ylva Strandberg, Antonio Reverter, Sean McWilliam, YongHong Wang, Keren Byrne, Ross Tellam
BMC Genomics 2005, 6:135 (22September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Software
GeneSeer: A sage for gene names and genomic resources
Andrew J Olson, Tim Tully, Ravi Sachidanandam
BMC Genomics 2005, 6:134 (21September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Comparative analysis of a BAC contig of porcine chromosome 13q31-q32 and human chromosome 3q21-q22
Mario Van Poucke, David Bourry, Fran ois Piumi, Marc Mattheeuws, Alex Van Zeveren, Patrick Chardon, Luc J Peelman
BMC Genomics 2005, 6:133 (21September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Molecular signature of clinical severity in recovering patients with severe acute respiratory syndrome coronavirus (SARS-CoV)
Yun-Shien Lee, Chun-Houh Chen, Angel Chao, En-Shih Chen, Min-Li Wei, Lung-Kun Chen, Kuender D Yang, Meng-Chih Lin, Yi-Hsi Wang, Jien-Wei Liu, Hock-Liew Eng, Ping-Cherng Chiang, Ting-Shu Wu, Kuo-Chein Tsao, Chung-Guei Huang, Yin-Jing Tien, Tzu-Hao Wang, Hsing-Shih Wang, Ying-Shiung Lee
BMC Genomics 2005, 6:132 (21September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Effect of dataset selection on the topological interpretation of protein interaction networks
Luke Hakes, David L Robertson, Stephen G Oliver
BMC Genomics 2005, 6:131 (20September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Characterization of the global profile of genes expressed in cervical epithelium by Serial Analysis of Gene Expression (SAGE)
Carlos Prez-Plasencia, Gregory Riggins, Guelaguetza Vzquez-Ortiz, Jos Moreno, Hugo Arreola, Alfredo Hidalgo, Patricia Pi a-Sanchez, Mauricio Salcedo
BMC Genomics 2005, 6:130 (19September2005)
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Research article
Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes
A Krupa, N Srinivasan
BMC Genomics 2005, 6:129 (19September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Genome annotation of Anopheles gambiae using mass spectrometry-derived data
Drio E Kalume, Suraj Peri, Raghunath Reddy, Jun Zhong, Mobolaji Okulate, Nirbhay Kumar, Akhilesh Pandey
BMC Genomics 2005, 6:128 (19September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Comparative analysis of the kinomes of three pathogenic trypanosomatids: Leishmania major, Trypanosoma brucei and Trypanosoma cruzi
Marilyn Parsons, Elizabeth A Worthey, Pauline N Ward, Jeremy C Mottram
BMC Genomics 2005, 6:127 (15September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
Methodology article
Fish and chips: Various methodologies demonstrate utility of a 16,006-gene salmonid microarray
Kristian R von Schalburg, Matthew L Rise, Glenn A Cooper, Gordon D Brown, A Ross Gibbs, Colleen C Nelson, William S Davidson, Ben F Koop
BMC Genomics 2005, 6:126 (15September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Comparative genomic analysis reveals a novel mitochondrial isoform of human rTS protein and unusual phylogenetic distribution of the rTS gene
Ping Liang, Jayakumar R Nair, Lei Song, John J McGuire, Bruce J Dolnick
BMC Genomics 2005, 6:125 (14September2005)
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Research article
Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts
Willem Albert Rensink, Yuandan Lee, Jia Liu, Stacy Iobst, Shu Ouyang, C Robin Buell
BMC Genomics 2005, 6:124 (14September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Database
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Alexander Sczyrba, Michael Beckstette, Ali H Brivanlou, Robert Giegerich, Curtis R Altmann
BMC Genomics 2005, 6:123 (14September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains
Stefano Campanaro, Alessandro Vezzi, Nicola Vitulo, Federico M Lauro, Michela D'Angelo, Francesca Simonato, Alessandro Cestaro, Giorgio Malacrida, Giulio Bertoloni, Giorgio Valle, Douglas H Bartlett
BMC Genomics 2005, 6:122 (14September2005)
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Research article
Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction
Christian Rckert, Daniel J Koch, Daniel A Rey, Andreas Albersmeier, Sascha Mormann, Alfred Phler, Jrn Kalinowski
BMC Genomics 2005, 6:121 (13September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Duplication and positive selection among hominin-specific PRAME genes
Zo Birtle, Leo Goodstadt, Chris Ponting
BMC Genomics 2005, 6:120 (13September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Computational evidence for hundreds of non-conserved plant microRNAs
Morten Lindow, Anders Krogh
BMC Genomics 2005, 6:119 (13September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
Methodology article
Rapid single nucleotide polymorphism mapping in C. elegans
M Wayne Davis, Marc Hammarlund, Tracey Harrach, Patrick Hullett, Shawn Olsen, Erik M Jorgensen
BMC Genomics 2005, 6:118 (12September2005)
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Research article
Comprehensive search for intra- and inter-specific sequence polymorphisms among coding envelope genes of retroviral origin found in the human genome: genes and pseudogenes
Nathalie de Parseval, Gora Diop, Sandra Blaise, Franois Helle, Alexandre Vasilescu, Fumihiko Matsuda, Thierry Heidmann
BMC Genomics 2005, 6:117 (9September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Comparison of theoretical proteomes: Identification of COGs with conserved and variable pI within the multimodal pI distribution
Soumyadeep Nandi, Nipun Mehra, Andrew M Lynn, Alok Bhattacharya
BMC Genomics 2005, 6:116 (9September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide
Wook Chang, David A Small, Freshteh Toghrol, William E Bentley
BMC Genomics 2005, 6:115 (8September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Identification and characterization of the fibrinogen-like domain of fibrinogen-related proteins in the mosquito, Anopheles gambiae, and the fruitfly, Drosophila melanogaster, genomes
Xinguo Wang, Qin Zhao, Bruce M Christensen
BMC Genomics 2005, 6:114 (8September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Methodology article
Improved tagging strategy for protein identification in mammalian cells
Agnieszka Bialkowska, Xian-Yang Zhang, Jakob Reiser
BMC Genomics 2005, 6:113 (4September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
GH97 is a new family of glycoside hydrolases, which is related to the  -galactosidase superfamily
Daniil G Naumoff
BMC Genomics 2005, 6:112 (30August2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment]
Research article
Hypoxia-activated genes from early placenta are elevated in Preeclampsia, but not in Intra-Uterine Growth Retardation
Daniel Vaiman, Franoise Mondon, Alexandra Garcs-Duran, Thrse-Marie Mignot, Brigitte Robert, Rgis Rebourcet, Hlne Jammes, Sonia T Chelbi, Frdrique Quetin, Geoffrey Marceau, Vincent Sapin, Franois Piumi, Jean-Louis Danan, Virginie Rigourd, Bruno Carbonne, Franoise Ferr
BMC Genomics 2005, 6:111 (29August2005)
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Research article
Reverse transcriptional profiling: non-correspondence of transcript level variation and proximal promoter polymorphism
Rebecca Petersen Brown, Martin E Feder
BMC Genomics 2005, 6:110 (17August2005)
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Research article
Dual activation of pathways regulated by steroid receptors and peptide growth factors in primary prostate cancer revealed by Factor Analysis of microarray data
Juan Jose Lozano, Marta Soler, Raquel Bermudo, David Abia, Pedro L Fernandez, Timothy M Thomson, Angel R Ortiz
BMC Genomics 2005, 6:109 (17August2005)
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Research article
Comparative analysis of expression of histone H2a genes in mouse
Hiromi Nishida, Takahiro Suzuki, Hiroki Ookawa, Yasuhiro Tomaru, Yoshihide Hayashizaki
BMC Genomics 2005, 6:108 (13August2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Transcribed Tc1-like transposons in salmonid fish
Aleksei Krasnov, Heikki Koskinen, Sergey Afanasyev, Hannu Mls
BMC Genomics 2005, 6:107 (12August2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Cross genome phylogenetic analysis of human and Drosophila G protein-coupled receptors: application to functional annotation of orphan receptors
Raghu Prasad Rao Metpally, Ramanathan Sowdhamini
BMC Genomics 2005, 6:106 (10August2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
The complete mitochondrial genome of the stomatopod crustacean Squilla mantis
Charles E Cook
BMC Genomics 2005, 6:105 (9August2005)
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Research article
A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription
Tomas Babak, Benjamin J Blencowe, Timothy R Hughes
BMC Genomics 2005, 6:104 (5August2005)
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Computational tradeoffs in multiplex PCR assay design for SNP genotyping
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Application of four dyes in gene expression analyses by microarrays
Yvonne CM Staal, Marcel HM van Herwijnen, Frederik J van Schooten, Joost HM van Delft
BMC Genomics 2005, 6:101 (25July2005)
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Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes
Isabelle Callebaut, Karine Prat, Edwige Meurice, Jean-Paul Mornon, Stanislas Tomavo
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Comparing independent microarray studies: the case of human embryonic stem cells
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Muscle regeneration in dystrophin-deficient mdx mice studied by gene expression profiling
R Turk, E Sterrenburg, EJ de Meijer, G-JB van Ommen, JT den Dunnen, PAC 't Hoen
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Positional and functional mapping of a neuroblastoma differentiation gene on chromosome 11
Katleen De Preter, Jo Vandesompele, Bjrn Menten, Philippa Carr, Heike Fiegler, Anders Edsj, Nigel P Carter, Nurten Yigit, Wim Waelput, Nadine Van Roy, Scott Bader, Sven P hlman, Frank Speleman
BMC Genomics 2005, 6:97 (6July2005)
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Bacillus thuringiensis Cry1Ca-resistant Spodoptera exigua lacks expression of one of four Aminopeptidase N genes
Salvador Herrero, Tsanko Gechev, Petra L Bakker, William J Moar, Ruud A de Maagd
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A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus
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BMC Genomics 2005, 6:95 (17June2005)
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Signature proteins that are distinctive of alpha proteobacteria
Pinay Kainth, Radhey S Gupta
BMC Genomics 2005, 6:94 (16June2005)
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Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome
Moshe Havilio, Erez Y Levanon, Galia Lerman, Martin Kupiec, Eli Eisenberg
BMC Genomics 2005, 6:93 (16June2005)
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Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium : Evidence for gene duplications and extensive gene clustering
Harshavardhan Doddapaneni, Ranajit Chakraborty, Jagjit S Yadav
BMC Genomics 2005, 6:92 (14June2005)
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Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips
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BMC Genomics 2005, 6:91 (14June2005)
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Inferring yeast cell cycle regulators and interactions using transcription factor activities
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BMC Genomics 2005, 6:90 (10June2005)
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A BAC-based physical map of the Nile tilapia genome
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BMC Genomics 2005, 6:88 (8June2005)
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Microsatellite mapping of QTL affecting growth, feed consumption, egg production, tonic immobility and body temperature of Japanese quail
Francis Minvielle, Boniface B Kayang, Miho Inoue-Murayama, Mitsuru Miwa, Alain Vignal, David Gourichon, Andr Neau, Jean-Louis Monvoisin, Shin'ichi Ito
BMC Genomics 2005, 6:87 (8June2005)
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The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences
Iris Brune, Karina Brinkrolf, Jrn Kalinowski, Alfred Phler, Andreas Tauch
BMC Genomics 2005, 6:86 (7June2005)
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Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii
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BMC Genomics 2005, 6:85 (6June2005)
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Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data
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BMC Genomics 2005, 6:84 (6June2005)
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(TG/CA)n repeats in human gene families: abundance and selective patterns of distribution according to function and gene length
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