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Editor-in-Chief Melissa Norton, MD Biology Editor Penelope Webb, PhD In-house Editor Matthew Kaiser PhD
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Research article
     Comparison of gene expression signatures of diamide, H2O2 and menadione exposed Aspergillus nidulans cultures linking genome-wide transcriptional changes to cellular physiology Istv n P csi, M rton Miskei, Zsolt Kar nyi, Tam s Emri, Patricia Ayoubi, T nde Pusztahelyi, Gy rgy Balla, Rolf A Prade BMC Genomics 2005, 6:182 (20 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Commentary
    Sal-Site: Integrating new and existing ambystomatid salamander research and informational resources Jeramiah J Smith, Srikrishna Putta, John A Walker, D Kevin Kump, Amy K Samuels, James R Monaghan, David W Weisrock, Chuck Staben, S Randal Voss BMC Genomics 2005, 6:181 (16 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     A method for accurate detection of genomic microdeletions using real-time quantitative PCR Rosanna Weksberg, Simon Hughes, Laura Moldovan, Anne S Bassett, Eva WC Chow, Jeremy A Squire BMC Genomics 2005, 6:180 (13 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] [1 comment] Research article
     Comparative genome analysis reveals a conserved family of actin-like proteins in apicomplexan parasites Jennifer L Gordon, L David Sibley BMC Genomics 2005, 6:179 (12 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Database
    GPX-Macrophage Expression Atlas: A database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults Graeme R Grimes, Stuart Moodie, John S Beattie, Marie Craigon, Paul Dickinson, Thorsten Forster, Andrew D Livingston, Muriel Mewissen, Kevin A Robertson, Alan J Ross, Garwin Sing, Peter Ghazal BMC Genomics 2005, 6:178 (12 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
     Comparative analysis of programmed cell death pathways in filamentous fungi Natalie D Fedorova, Jonathan H Badger, Geoff D Robson, Jennifer R Wortman, William C Nierman BMC Genomics 2005, 6:177 (8 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] [1 comment] Methodology article
     ASAP: Amplification, sequencing & annotation of plastomes Amit Dhingra, Kevin M Folta BMC Genomics 2005, 6:176 (7 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Sequence comparisons of plasmids pBJS-O of Spiroplasma citri and pSKU146 of S. kunkelii: implications for plasmid evolution Bharat D Joshi, Michael Berg, Janet Rogers, Jacqueline Fletcher, Ulrich Melcher BMC Genomics 2005, 6:175 (7 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     Bacterial genome adaptation to niches: Divergence of the potential virulence genes in three Burkholderia species of different survival strategies H Stanley Kim, Mark A Schell, Yan Yu, Ricky L Ulrich, Saul H Sarria, William C Nierman, David DeShazer BMC Genomics 2005, 6:174 (7 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     The odorant receptor repertoire of teleost fish Tyler S Alioto, John Ngai BMC Genomics 2005, 6:173 (6 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    The angiotensin-converting enzyme (ACE) gene family of Anopheles gambiae Susan Burnham, Judith A Smith, Alison J Lee, R Elwyn Isaac, Alan D Shirras BMC Genomics 2005, 6:172 (5 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar) Heidi Hagen-Larsen, Jon K Laerdahl, Frank Panitz, Alexei Adzhubei, Bj rn H yheim BMC Genomics 2005, 6:171 (1 December 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates Bart MG Smits, Victor Guryev, Dimphy Zeegers, Dirk Wedekind, Hans J Hedrich, Edwin Cuppen BMC Genomics 2005, 6:170 (29 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    The EH1 motif in metazoan transcription factors Richard R Copley BMC Genomics 2005, 6:169 (27 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes Soohyun Lee, Isaac Kohane, Simon Kasif BMC Genomics 2005, 6:168 (27 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Analysis of vertebrate genomes suggests a new model for clade B serpin evolution Dion Kaiserman, Phillip I Bird BMC Genomics 2005, 6:167 (23 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Methodology article
     Characterization of 954 bovine full-CDS cDNA sequences Gregory P Harhay, Tad S Sonstegard, John W Keele, Michael P Heaton, Michael L Clawson, Warren M Snelling, Ralph T Wiedmann, Curt P Van Tassell, Timothy PL Smith BMC Genomics 2005, 6:166 (23 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
    Expression and genomic organization of zonadhesin-like genes in three species of fish give insight into the evolutionary history of a mosaic protein Peter ND Hunt, Michael D Wilson, Kristian R von Schalburg, William S Davidson, Ben F Koop BMC Genomics 2005, 6:165 (22 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
     Efficient gene-driven germ-line point mutagenesis of C57BL/6J mice Edward J Michaud, Cymbeline T Culiat, Mitchell L Klebig, Paul E Barker, KT Cain, Debra J Carpenter, Lori L Easter, Carmen M Foster, Alysyn W Gardner, ZY Guo, Kay J Houser, Lori A Hughes, Marilyn K Kerley, Zhaowei Liu, Robert E Olszewski, Irina Pinn, Ginger D Shaw, Sarah G Shinpock, Ann M Wymore, Eugene M Rinchik, Dabney K Johnson BMC Genomics 2005, 6:164 (21 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     An acquisition account of genomic islands based on genome signature comparisons MWJ van Passel, A Bart, HH Thygesen, ACM Luyf, AHC van Kampen, A van der Ende BMC Genomics 2005, 6:163 (18 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria S bastien Rey, Jennifer L Gardy, Fiona SL Brinkman BMC Genomics 2005, 6:162 (17 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Construction and characterization of a genomic BAC library for the Mus m. musculus mouse subspecies (PWD/Ph inbred strain) Petr Jansa, Petr Divina, Ji Forejt BMC Genomics 2005, 6:161 (16 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
    Leveraging human genomic information to identify nonhuman primate sequences for expression array development Eliot R Spindel, Mark A Pauley, Yibing Jia, Courtney Gravett, Shaun L Thompson, Nicholas F Boyle, Sergio R Ojeda, Robert B Norgren Jr BMC Genomics 2005, 6:160 (15 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     Preferential attachment in the evolution of metabolic networks Sara Light, Per Kraulis, Arne Elofsson BMC Genomics 2005, 6:159 (10 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains Elisa Giuntini, Alessio Mengoni, Carlotta De Filippo, Duccio Cavalieri, Nadia Aubin-Horth, Christian R Landry, Anke Becker, Marco Bazzicalupo BMC Genomics 2005, 6:158 (10 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Genetic mapping of putative Chrna7 and Luzp2 neuronal transcriptional enhancers due to impact of a transgene-insertion and 6.8 Mb deletion in a mouse model of Prader-Willi and Angelman syndromes Mihaela Stefan, Kathryn C Claiborn, Edyta Stasiek, Jing-Hua Chai, Tohru Ohta, Richard Longnecker, John M Greally, Robert D Nicholls BMC Genomics 2005, 6:157 (9 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
     The zebrafish progranulin gene family and antisense transcripts Beno t Cadieux, Babykumari P Chitramuthu, David Baranowski, Hugh PJ Bennett BMC Genomics 2005, 6:156 (8 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Methodology article
    SSH adequacy to preimplantation mammalian development: Scarce specific transcripts cloning despite irregular normalisation LC Bui, RD L andri, JP Renard, V Duranthon BMC Genomics 2005, 6:155 (8 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni Thewarach Laha, Nonglack Kewgrai, Alex Loukas, Paul J Brindley BMC Genomics 2005, 6:154 (4 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Methodology article
    A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example N Balandraud, P Gouret, EGJ Danchin, M Blanc, D Zinn, J Roudier, P Pontarotti BMC Genomics 2005, 6:153 (4 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
    A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish Jennifer G Sambrook, Felipe Figueroa, Stephan Beck BMC Genomics 2005, 6:152 (4 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     cGMP-independent nitric oxide signaling and regulation of the cell cycle Xiaolin Cui, Jianhua Zhang, Penglin Ma, Daniela E Myers, Ilana G Goldberg, Kelly J Sittler, Jennifer J Barb, Peter J Munson, Ana del Pilar Cintron, J Philip McCoy, Shuibang Wang, Robert L Danner BMC Genomics 2005, 6:151 (3 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Methodology article
     Proposed methods for testing and selecting the ERCC external RNA controls External RNA Controls Consortium BMC Genomics 2005, 6:150 (2 November 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data Matthew J Huentelman, David W Craig, Albert D Shieh, Jason J Corneveaux, Diane Hu-Lince, John V Pearson, Dietrich A Stephan BMC Genomics 2005, 6:149 (31 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Specificity and overlap in gene segment-defined antibody repertoires Ramy A Arnaout BMC Genomics 2005, 6:148 (28 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
    Limitations of mRNA amplification from small-size cell samples Vigdis Nygaard, Marit Holden, Anders L land, Mette Langaas, Ola Myklebost, Eivind Hovig BMC Genomics 2005, 6:147 (27 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Identification of genes involved in Ca2+ ionophore A23187-mediated apoptosis and demonstration of a high susceptibility for transcriptional repression of cell cycle genes in B lymphoblasts from a patient with Scott syndrome Detlef Kozian, Val rie Proulle, Almut Nitsche, Marie Galitzine, Marie-Carmen Martinez, Beatrice Schumann, Dominique Meyer, Matthias Herrmann, Jean-Marie Freyssinet, Dani le Kerbiriou-Nabias BMC Genomics 2005, 6:146 (21 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Software
     i-Tracker: For quantitative proteomics using iTRAQ Ian P Shadforth, Tom PJ Dunkley, Kathryn S Lilley, Conrad Bessant BMC Genomics 2005, 6:145 (20 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters Nathalie Pavy, Charles Paule, Lee Parsons, John A Crow, Marie-Josee Morency, Janice Cooke, James E Johnson, Etienne Noumen, Carine Guillet-Claude, Yaron Butterfield, Sarah Barber, George Yang, Jerry Liu, Jeff Stott, Robert Kirkpatrick, Asim Siddiqui, Robert Holt, Marco Marra, Armand Seguin, Ernest Retzel, Jean Bousquet, John MacKay BMC Genomics 2005, 6:144 (19 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes Eric D Brenner, Manpreet S Katari, Dennis W Stevenson, Stephen A Rudd, Andrew W Douglas, Walter N Moss, Richard W Twigg, Suzan J Runko, Giulia M Stellari, WR McCombie, Gloria M Coruzzi BMC Genomics 2005, 6:143 (15 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Macrodissection versus microdissection of rectal carcinoma: minor influence of stroma cells to tumor cell gene expression profiles Elza C de Bruin, Simone van de Pas, Esther H Lips, Ronald van Eijk, Minke MC van der Zee, Marcel Lombaerts, Tom van Wezel, Corrie AM Marijnen, J Han JM van Krieken, Jan Paul Medema, Cornelis JH van de Velde, Paul HC Eilers, Lucy TC Peltenburg BMC Genomics 2005, 6:142 (14 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    The stress response against denatured proteins in the deletion of cytosolic chaperones SSA1/2 is different from heat-shock response in Saccharomyces cerevisiae Rena Matsumoto, Kuniko Akama, Randeep Rakwal, Hitoshi Iwahashi BMC Genomics 2005, 6:141 (7 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
     The distribution of SNPs in human gene regulatory regions Yongjian Guo, D Curtis Jamison BMC Genomics 2005, 6:140 (6 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
    In silico characterization of the family of PARP-like poly(ADP-ribosyl)transferases (pARTs) Helge Otto, Pedro A Reche, Fernando Bazan, Katharina Dittmar, Friedrich Haag, Friedrich Koch-Nolte BMC Genomics 2005, 6:139 (4 October 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Methodology article
     Identification of disease causing loci using an array-based genotyping approach on pooled DNA David W Craig, Matthew J Huentelman, Diane Hu-Lince, Victoria L Zismann, Michael C Kruer, Anne M Lee, Erik G Puffenberger, John M Pearson, Dietrich A Stephan BMC Genomics 2005, 6:138 (30 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     A TNF-induced gene expression program under oscillatory NF- B control Bing Tian, David E Nowak, Allan R Brasier BMC Genomics 2005, 6:137 (28 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Mitochondrial-encoded membrane protein transcripts are pyrimidine-rich while soluble protein transcripts and ribosomal RNA are purine-rich Patrick C Bradshaw, Anand Rathi, David C Samuels BMC Genomics 2005, 6:136 (26 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
     Construction and validation of a Bovine Innate Immune Microarray Laurelea Donaldson, Tony Vuocolo, Christian Gray, Ylva Strandberg, Antonio Reverter, Sean McWilliam, YongHong Wang, Keren Byrne, Ross Tellam BMC Genomics 2005, 6:135 (22 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Software
     GeneSeer: A sage for gene names and genomic resources Andrew J Olson, Tim Tully, Ravi Sachidanandam BMC Genomics 2005, 6:134 (21 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Comparative analysis of a BAC contig of porcine chromosome 13q31-q32 and human chromosome 3q21-q22 Mario Van Poucke, David Bourry, Fran ois Piumi, Marc Mattheeuws, Alex Van Zeveren, Patrick Chardon, Luc J Peelman BMC Genomics 2005, 6:133 (21 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
    Molecular signature of clinical severity in recovering patients with severe acute respiratory syndrome coronavirus (SARS-CoV) Yun-Shien Lee, Chun-Houh Chen, Angel Chao, En-Shih Chen, Min-Li Wei, Lung-Kun Chen, Kuender D Yang, Meng-Chih Lin, Yi-Hsi Wang, Jien-Wei Liu, Hock-Liew Eng, Ping-Cherng Chiang, Ting-Shu Wu, Kuo-Chein Tsao, Chung-Guei Huang, Yin-Jing Tien, Tzu-Hao Wang, Hsing-Shih Wang, Ying-Shiung Lee BMC Genomics 2005, 6:132 (21 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Effect of dataset selection on the topological interpretation of protein interaction networks Luke Hakes, David L Robertson, Stephen G Oliver BMC Genomics 2005, 6:131 (20 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Characterization of the global profile of genes expressed in cervical epithelium by Serial Analysis of Gene Expression (SAGE) Carlos P rez-Plasencia, Gregory Riggins, Guelaguetza V zquez-Ortiz, Jos Moreno, Hugo Arreola, Alfredo Hidalgo, Patricia Pi a-Sanchez, Mauricio Salcedo BMC Genomics 2005, 6:130 (19 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes A Krupa, N Srinivasan BMC Genomics 2005, 6:129 (19 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Genome annotation of Anopheles gambiae using mass spectrometry-derived data D rio E Kalume, Suraj Peri, Raghunath Reddy, Jun Zhong, Mobolaji Okulate, Nirbhay Kumar, Akhilesh Pandey BMC Genomics 2005, 6:128 (19 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     Comparative analysis of the kinomes of three pathogenic trypanosomatids: Leishmania major, Trypanosoma brucei and Trypanosoma cruzi Marilyn Parsons, Elizabeth A Worthey, Pauline N Ward, Jeremy C Mottram BMC Genomics 2005, 6:127 (15 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central] Methodology article
    Fish and chips: Various methodologies demonstrate utility of a 16,006-gene salmonid microarray Kristian R von Schalburg, Matthew L Rise, Glenn A Cooper, Gordon D Brown, A Ross Gibbs, Colleen C Nelson, William S Davidson, Ben F Koop BMC Genomics 2005, 6:126 (15 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Comparative genomic analysis reveals a novel mitochondrial isoform of human rTS protein and unusual phylogenetic distribution of the rTS gene Ping Liang, Jayakumar R Nair, Lei Song, John J McGuire, Bruce J Dolnick BMC Genomics 2005, 6:125 (14 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
     Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts Willem Albert Rensink, Yuandan Lee, Jia Liu, Stacy Iobst, Shu Ouyang, C Robin Buell BMC Genomics 2005, 6:124 (14 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Database
    XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis Alexander Sczyrba, Michael Beckstette, Ali H Brivanlou, Robert Giegerich, Curtis R Altmann BMC Genomics 2005, 6:123 (14 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains Stefano Campanaro, Alessandro Vezzi, Nicola Vitulo, Federico M Lauro, Michela D'Angelo, Francesca Simonato, Alessandro Cestaro, Giorgio Malacrida, Giulio Bertoloni, Giorgio Valle, Douglas H Bartlett BMC Genomics 2005, 6:122 (14 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction Christian R ckert, Daniel J Koch, Daniel A Rey, Andreas Albersmeier, Sascha Mormann, Alfred P hler, J rn Kalinowski BMC Genomics 2005, 6:121 (13 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Duplication and positive selection among hominin-specific PRAME genes Zo Birtle, Leo Goodstadt, Chris Ponting BMC Genomics 2005, 6:120 (13 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     Computational evidence for hundreds of non-conserved plant microRNAs Morten Lindow, Anders Krogh BMC Genomics 2005, 6:119 (13 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central] Methodology article
     Rapid single nucleotide polymorphism mapping in C. elegans M Wayne Davis, Marc Hammarlund, Tracey Harrach, Patrick Hullett, Shawn Olsen, Erik M Jorgensen BMC Genomics 2005, 6:118 (12 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
     Comprehensive search for intra- and inter-specific sequence polymorphisms among coding envelope genes of retroviral origin found in the human genome: genes and pseudogenes Nathalie de Parseval, Gora Diop, Sandra Blaise, Fran ois Helle, Alexandre Vasilescu, Fumihiko Matsuda, Thierry Heidmann BMC Genomics 2005, 6:117 (9 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Comparison of theoretical proteomes: Identification of COGs with conserved and variable pI within the multimodal pI distribution Soumyadeep Nandi, Nipun Mehra, Andrew M Lynn, Alok Bhattacharya BMC Genomics 2005, 6:116 (9 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide Wook Chang, David A Small, Freshteh Toghrol, William E Bentley BMC Genomics 2005, 6:115 (8 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Identification and characterization of the fibrinogen-like domain of fibrinogen-related proteins in the mosquito, Anopheles gambiae, and the fruitfly, Drosophila melanogaster, genomes Xinguo Wang, Qin Zhao, Bruce M Christensen BMC Genomics 2005, 6:114 (8 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Methodology article
    Improved tagging strategy for protein identification in mammalian cells Agnieszka Bialkowska, Xian-Yang Zhang, Jakob Reiser BMC Genomics 2005, 6:113 (4 September 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    GH97 is a new family of glycoside hydrolases, which is related to the -galactosidase superfamily Daniil G Naumoff BMC Genomics 2005, 6:112 (30 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment] Research article
    Hypoxia-activated genes from early placenta are elevated in Preeclampsia, but not in Intra-Uterine Growth Retardation Daniel Vaiman, Fran oise Mondon, Alexandra Garc s-Duran, Th r se-Marie Mignot, Brigitte Robert, R gis Rebourcet, H l ne Jammes, Sonia T Chelbi, Fr d rique Quetin, Geoffrey Marceau, Vincent Sapin, Fran ois Piumi, Jean-Louis Danan, Virginie Rigourd, Bruno Carbonne, Fran oise Ferr BMC Genomics 2005, 6:111 (29 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Research article
     Reverse transcriptional profiling: non-correspondence of transcript level variation and proximal promoter polymorphism Rebecca Petersen Brown, Martin E Feder BMC Genomics 2005, 6:110 (17 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Dual activation of pathways regulated by steroid receptors and peptide growth factors in primary prostate cancer revealed by Factor Analysis of microarray data Juan Jose Lozano, Marta Soler, Raquel Bermudo, David Abia, Pedro L Fernandez, Timothy M Thomson, Angel R Ortiz BMC Genomics 2005, 6:109 (17 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Comparative analysis of expression of histone H2a genes in mouse Hiromi Nishida, Takahiro Suzuki, Hiroki Ookawa, Yasuhiro Tomaru, Yoshihide Hayashizaki BMC Genomics 2005, 6:108 (13 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Transcribed Tc1-like transposons in salmonid fish Aleksei Krasnov, Heikki Koskinen, Sergey Afanasyev, Hannu M ls BMC Genomics 2005, 6:107 (12 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     Cross genome phylogenetic analysis of human and Drosophila G protein-coupled receptors: application to functional annotation of orphan receptors Raghu Prasad Rao Metpally, Ramanathan Sowdhamini BMC Genomics 2005, 6:106 (10 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    The complete mitochondrial genome of the stomatopod crustacean Squilla mantis Charles E Cook BMC Genomics 2005, 6:105 (9 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
     A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription Tomas Babak, Benjamin J Blencowe, Timothy R Hughes BMC Genomics 2005, 6:104 (5 August 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] [1 comment] Research article
    Conjugative plasmid pAW63 brings new insights into the genesis of the Bacillus anthracis virulence plasmid pXO2 and of the Bacillus thuringiensis plasmid pBT9727 G raldine A Van der Auwera, Lars Andrup, Jacques Mahillon BMC Genomics 2005, 6:103 (26 July 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Computational tradeoffs in multiplex PCR assay design for SNP genotyping John Rachlin, Chunming Ding, Charles Cantor, Simon Kasif BMC Genomics 2005, 6:102 (25 July 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] Methodology article
    Application of four dyes in gene expression analyses by microarrays Yvonne CM Staal, Marcel HM van Herwijnen, Frederik J van Schooten, Joost HM van Delft BMC Genomics 2005, 6:101 (25 July 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
    Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes Isabelle Callebaut, Karine Prat, Edwige Meurice, Jean-Paul Mornon, Stanislas Tomavo BMC Genomics 2005, 6:100 (23 July 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Methodology article
    Comparing independent microarray studies: the case of human embryonic stem cells Mayte Su rez-Fari as, Scott Noggle, Michael Heke, Ali Hemmati-Brivanlou, Marcelo O Magnasco BMC Genomics 2005, 6:99 (22 July 2005) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research article
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