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BMC Genetics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 6 Supplement 1

Genetic Analysis Workshop 14: Microsatellite and single-nucleotide polymorphism

Proceedings

Genetic Analysis Workshop 14: Microsatellite and single-nucleotide polymorphism

Noordwijkerhout, The Netherlands

7-10 September 2004

Edited by Joan E Bailey-Wilson, Laura Almasy, Mariza de Andrade, Julia Bailey, Heike Bickeböller, Heather J Cordell, E Warwick Daw, Lynn Goldin, Ellen L Goode, Courtney Gray-McGuire, Wayne Hening, Gail Jarvik, Brion S Maher, Nancy Mendell, Andrew D Paterson, John Rice, Glen Satten, Brian Suarez, Veronica Vieland, Marsha Wilcox, Heping Zhang, Andreas Ziegler and Jean W MacCluer

Conference website

Genetic Analysis Workshop 14: microsatellite and single-nucleotide polymorphism marker loci for genome-wide scans

Joan E Bailey-Wilson, Laura Almasy, Mariza de Andrade, Julia Bailey, Heike Bickeböller, Heather J Cordell, E Warwick Daw, Lynn Goldin, Ellen L Goode, Courtney Gray-McGuire, Wayne Hening, Gail Jarvik, Brion S Maher, Nancy Mendell, Andrew D Paterson, John Rice, Glen Satten, Brian Suarez, Veronica Vieland, Marsha Wilcox, Heping Zhang, Andreas Ziegler, Jean W MacCluer BMC Genetics 2005, 6(Suppl 1):S1 (30 December 2005)

Full text | PDF | PubMed | Cited on BioMed Central

Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14

Howard J Edenberg, Laura J Bierut, Paul Boyce, Manqiu Cao, Simon Cawley, Richard Chiles, Kimberly F Doheny, Mark Hansen, Tony Hinrichs, Kevin Jones BMC Genetics 2005, 6(Suppl 1):S2 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Construction of the model for the Genetic Analysis Workshop 14 simulated data: genotype-phenotype relationships, gene interaction, linkage, association, disequilibrium, and ascertainment effects for a complex phenotype

David A Greenberg, Junying Zhang, Dvora Shmulewitz, Lisa J Strug, Regina Zimmerman, Veena Singh, Sudhir Marathe BMC Genetics 2005, 6(Suppl 1):S3 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Genome scan linkage analysis comparing microsatellites and single-nucleotide polymorphisms markers for two measures of alcoholism in chromosomes 1, 4, and 7

Guanjie Chen, Adebowale Adeyemo, Jie Zhou, Ao Yuan, Yuanxiu Chen, Charles Rotimi BMC Genetics 2005, 6(Suppl 1):S4 (30 December 2005)

Abstract | Full text | PDF | PubMed

Comparison of single-nucleotide polymorphisms and microsatellites in detecting quantitative trait loci for alcoholism: The Collaborative Study on the Genetics of Alcoholism

Helen Kim, Carolyn M Hutter, Stephanie A Monks, Karen L Edwards BMC Genetics 2005, 6(Suppl 1):S5 (30 December 2005)

Abstract | Full text | PDF | PubMed

The effect of linkage disequilibrium on linkage analysis of incomplete pedigrees

Douglas F Levinson, Peter Holmans BMC Genetics 2005, 6(Suppl 1):S6 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Comparison of the power between microsatellite and single-nucleotide polymorphism markers for linkage and linkage disequilibrium mapping of an electrophysiological phenotype

Hsiu-Fen Lin, Suh-Hang Juo, Rong Cheng BMC Genetics 2005, 6(Suppl 1):S7 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Genome-wide linkage analysis for alcohol dependence: a comparison between single-nucleotide polymorphism and microsatellite marker assays

Qianli Ma, Yi Yu, Yan Meng, John Farrell, Lindsay A Farrer, Marsha A Wilcox BMC Genetics 2005, 6(Suppl 1):S8 (30 December 2005)

Abstract | Full text | PDF | PubMed

Whole-genome association studies of alcoholism with loci linked to schizophrenia susceptibility

Junghyun Namkung, Youngchul Kim, Taesung Park BMC Genetics 2005, 6(Suppl 1):S9 (30 December 2005)

Abstract | Full text | PDF | PubMed

Linkage analysis of complex diseases using microsatellites and single-nucleotide polymorphisms: application to alcoholism

Jérémie Nsengimana, Hélène Renard, David Goldgar BMC Genetics 2005, 6(Suppl 1):S10 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Comparison of marker types and map assumptions using Markov chain Monte Carlo-based linkage analysis of COGA data

Weiva Sieh, Saonli Basu, Audrey Q Fu, Joseph H Rothstein, Paul A Scheet, William CL Stewart, Yun J Sung, Elizabeth A Thompson, Ellen M Wijsman BMC Genetics 2005, 6(Suppl 1):S11 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Genome-wide linkage analysis of age at onset of alcohol dependence: a comparison between microsatellites and single-nucleotide polymorphisms

Bamidele O Tayo, Yulan Liang, Saverio Stranges, Maurizio Trevisan BMC Genetics 2005, 6(Suppl 1):S12 (30 December 2005)

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Comparing single-nucleotide polymorphism marker-based and microsatellite marker-based linkage analyses

Ayse Ulgen, Wentian Li BMC Genetics 2005, 6(Suppl 1):S13 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Linkage analysis of the GAW14 simulated dataset with microsatellite and single-nucleotide polymorphism markers in large pedigrees

Xiaohong Yang, Kevin Jacobs, Kimberly F Kerstann, Andrew W Bergen, Alisa M Goldstein, Lynn R Goldin BMC Genetics 2005, 6(Suppl 1):S14 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Whole-genome variance components linkage analysis using single-nucleotide polymorphisms versus microsatellites on quantitative traits of derived phenotypes from factor analysis of electroencephalogram waves

Yi Yu, Yan Meng, Qianli Ma, John Farrell, Lindsay A Farrer, Marsha A Wilcox BMC Genetics 2005, 6(Suppl 1):S15 (30 December 2005)

Abstract | Full text | PDF | PubMed

Which strategy is better for linkage analysis: single-nucleotide polymorphisms or microsatellites? Evaluation by identity-by-state – identity-by-descent transformation affected sib-pair method on GAW14 data

Qingqi Yue, Victor Apprey, George E Bonney BMC Genetics 2005, 6(Suppl 1):S16 (30 December 2005)

Abstract | Full text | PDF | PubMed

A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measures

Chun Zhang, Simon Cawley, Guoying Liu, Manqiu Cao, Harley Gorrell, Giulia C Kennedy BMC Genetics 2005, 6(Suppl 1):S17 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Detection of susceptibility loci by genome-wide linkage analysis

Marie-Claude Babron, Catherine Bourgain, Anne-Louise Leutenegger, Françoise Clerget-Darpoux BMC Genetics 2005, 6(Suppl 1):S18 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Linkage mapping of a complex trait in the New York population of the GAW14 simulated dataset: a multivariate phenotype approach

Saurabh Ghosh, Samsiddhi Bhattacharjee, Gourab Basu, Sandip Pal, Partha P Majumder BMC Genetics 2005, 6(Suppl 1):S19 (30 December 2005)

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Investigation of altering single-nucleotide polymorphism density on the power to detect trait loci and frequency of false positive in nonparametric linkage analyses of qualitative traits

Alison P Klein, Ya-Yu Tsai, Priya Duggal, Elizabeth M Gillanders, Michael Barnhart, Rasika A Mathias, Ian P Dusenberry, Amy Turiff, Peter S Chines, Janet Goldstein, Robert Wojciechowski, Wayne Hening, Elizabeth W Pugh, Joan E Bailey-Wilson BMC Genetics 2005, 6(Suppl 1):S20 (30 December 2005)

Abstract | Full text | PDF | PubMed

Interval estimation of disease loci: development and applications of new linkage methods

Charalampos Papachristou, Shili Lin BMC Genetics 2005, 6(Suppl 1):S21 (30 December 2005)

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Inclusion of unaffected sibs increases power in model-free linkage analysis of a behavioral trait

Sabine Plancoulaine, Alexandre Alcaïs, Yue Chen, Laurent Abel, France Gagnon BMC Genetics 2005, 6(Suppl 1):S22 (30 December 2005)

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Local false discovery rate and minimum total error rate approaches to identifying interesting chromosomal regions

Ritwik Sinha, Moumita Sinha, George Mathew, Robert C Elston, Yuqun Luo BMC Genetics 2005, 6(Suppl 1):S23 (30 December 2005)

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Resampling methods to reduce the selection bias in genetic effect estimation in genome-wide scans

Long Wu, Sophia SF Lee, Haijiang Shi, Lei Sun, Shelley B Bull BMC Genetics 2005, 6(Suppl 1):S24 (30 December 2005)

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Linkage and association analyses of microsatellites and single-nucleotide polymorphisms in nuclear families

Jennifer Lin, Kuang-Yu Liu BMC Genetics 2005, 6(Suppl 1):S25 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Comparison of single-nucleotide polymorphisms and microsatellites in inference of population structure

Nianjun Liu, Liang Chen, Shuang Wang, Cheongeun Oh, Hongyu Zhao BMC Genetics 2005, 6(Suppl 1):S26 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

A comparison between microsatellite and single-nucleotide polymorphism markers with respect to two measures of information content

Anbupalam Thalamuthu, Indranil Mukhopadhyay, Amrita Ray, Daniel E Weeks BMC Genetics 2005, 6(Suppl 1):S27 (30 December 2005)

Abstract | Full text | PDF | PubMed

Whole-genome linkage analysis in mapping alcoholism genes using single-nucleotide polymorphisms and microsatellites

Shuang Wang, Song Huang, Nianjun Liu, Liang Chen, Cheongeun Oh, Hongyu Zhao BMC Genetics 2005, 6(Suppl 1):S28 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Comparison of microsatellites, single-nucleotide polymorphisms (SNPs) and composite markers derived from SNPs in linkage analysis

Chao Xing, Fredrick R Schumacher, Guan Xing, Qing Lu, Tao Wang, Robert C Elston BMC Genetics 2005, 6(Suppl 1):S29 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

A genome-wide scanning and fine mapping study of COGA data

Hsin-Chou Yang, Chien-Ching Chang, Chin-Yu Lin, Chun-Liang Chen, Chin-Yu Lin, Cathy SJ Fann BMC Genetics 2005, 6(Suppl 1):S30 (30 December 2005)

Abstract | Full text | PDF | PubMed

Linkage analysis and association analysis in the presence of linkage using age at onset of COGA alcoholism data

Xiaoyun Zhong, Heping Zhang BMC Genetics 2005, 6(Suppl 1):S31 (30 December 2005)

Abstract | Full text | PDF | PubMed

Single-nucleotide polymorphism versus microsatellite markers in a combined linkage and segregation analysis of a quantitative trait

E Warwick Daw, Simon C Heath, Yue Lu BMC Genetics 2005, 6(Suppl 1):S32 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Application of the propensity score in a covariate-based linkage analysis of the Collaborative Study on the Genetics of Alcoholism

Betty Q Doan, Constantine E Frangakis, Yin Y Shugart, Joan E Bailey-Wilson BMC Genetics 2005, 6(Suppl 1):S33 (30 December 2005)

Abstract | Full text | PDF | PubMed

Multipoint identity-by-descent computations for single-point polymorphism and microsatellite maps

Anthony L Hinrichs, Sarah Bertelsen, Laura J Bierut, Gerald Dunn, Carol H Jin, John S Kauwe, Brian K Suarez BMC Genetics 2005, 6(Suppl 1):S34 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Simulation-based homozygosity mapping with the GAW14 COGA dataset on alcoholism

Ondrej Libiger, Nicholas J Schork BMC Genetics 2005, 6(Suppl 1):S35 (30 December 2005)

Abstract | Full text | PDF | PubMed

Linkage analysis of alcohol dependence using both affected and discordant sib pairs

Pei-Ying Shih, Tao Wang, Chao Xing, Moumita Sinha, Yeunjoo Song, Robert C Elston BMC Genetics 2005, 6(Suppl 1):S36 (30 December 2005)

Abstract | Full text | PDF | PubMed

Multilocus and interaction-based genome scan for alcoholism risk factors in Caucasian Americans: the COGA study

Adrienne H Williams, W Mark Brown, Carl D Langefeld BMC Genetics 2005, 6(Suppl 1):S37 (30 December 2005)

Abstract | Full text | PDF | PubMed

Recursive partitioning models for linkage in COGA data

Wei Xu, Chelsea Taylor, Justin Veenstra, Shelley B Bull, Mary Corey, Celia MT Greenwood BMC Genetics 2005, 6(Suppl 1):S38 (30 December 2005)

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A Bayesian approach for applying Haseman-Elston methods

Seungtai Yoon, Young Suh, Nancy Mendell, Kenny Ye BMC Genetics 2005, 6(Suppl 1):S39 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Linkage analysis of GAW14 simulated data: comparison of multimarker, multipoint, and conditional approaches

Mathew J Barber, Eleanor Wheeler, Heather J Cordell BMC Genetics 2005, 6(Suppl 1):S40 (30 December 2005)

Abstract | Full text | PDF | PubMed

Genome-wide linkage and association mapping of disease genes with the GAW14 simulated datasets

Kim W Carter, Pamela A McCaskie, Lyle J Palmer BMC Genetics 2005, 6(Suppl 1):S41 (30 December 2005)

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Identifying genomic regions for fine-mapping using genome scan meta-analysis (GSMA) to identify the minimum regions of maximum significance (MRMS) across populations

Margaret E Cooper, Toby H Goldstein, Brion S Maher, Mary L Marazita BMC Genetics 2005, 6(Suppl 1):S42 (30 December 2005)

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An updated meta-analysis approach for genetic linkage

Carol J Etzel, Mei Liu, Tracy J Costello BMC Genetics 2005, 6(Suppl 1):S43 (30 December 2005)

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Calculation of multipoint likelihoods using flanking marker data: a simulation study

Andrew W George, LaVonne A Mangin, Christopher W Bartlett, Mark W Logue, Alberto M Segre, Veronica J Vieland BMC Genetics 2005, 6(Suppl 1):S44 (30 December 2005)

Abstract | Full text | PDF | PubMed

Covariate linkage analysis of GAW14 simulated data incorporating subclinical phenotype, sex, population, parent-of-origin, and interaction

Marian L Hamshere, Stuart MacGregor, Valentina Moskvina, Ivan N Nikolov, Peter A Holmans BMC Genetics 2005, 6(Suppl 1):S45 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Modeling the effect of an associated single-nucleotide polymorphism in linkage studies

Jeanine J Houwing-Duistermaat, Hae-Won Uh, Jeremie JP Lebrec, Hein Putter, Li Hsu BMC Genetics 2005, 6(Suppl 1):S46 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

A gene-model-free method for linkage analysis of a disease-related-trait based on analysis of proband/sibling pairs

Heejong Sung, Stephen J Finch, Kenny Q Ye, Nancy R Mendell BMC Genetics 2005, 6(Suppl 1):S47 (30 December 2005)

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The role of parametric linkage methods in complex trait analyses using microsatellites

Michael D Badzioch, Ellen L Goode, Gail P Jarvik BMC Genetics 2005, 6(Suppl 1):S48 (30 December 2005)

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Including endophenotypes as covariates in variance component heritability and linkage analysis

Julia N Bailey BMC Genetics 2005, 6(Suppl 1):S49 (30 December 2005)

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Haseman-Elston weighted by marker informativity

Daniel Franke, André Kleensang, Robert C Elston, Andreas Ziegler BMC Genetics 2005, 6(Suppl 1):S50 (30 December 2005)

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Whole-genome association analysis to identify markers associated with recombination rates using single-nucleotide polymorphisms and microsatellites

Song Huang, Shuang Wang, Nianjun Liu, Liang Chen, Cheongeun Oh, Hongyu Zhao BMC Genetics 2005, 6(Suppl 1):S51 (30 December 2005)

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On normality, ethnicity, and missing values in quantitative trait locus mapping

Aurélie Labbe, Hanna Wormald BMC Genetics 2005, 6(Suppl 1):S52 (30 December 2005)

Abstract | Full text | PDF | PubMed

Application of a rank-based genetic association test to age-at-onset data from the Collaborative Study on the Genetics of Alcoholism study

Yi-Ju Li, Eden R Martin, Ling Zhang, Andrew S Allen BMC Genetics 2005, 6(Suppl 1):S53 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Critical values and variation in type I error along chromosomes in the COGA dataset using the applied pseudo-trait method

George J Papanicolaou, Cristina M Justice, Illija M Kovac, Alexa JM Sorant, Alexander F Wilson BMC Genetics 2005, 6(Suppl 1):S54 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Surrogate phenotype definition for alcohol use disorders: a genome-wide search for linkage and association

Albert Rosenberger, Nico Janicke, Karola Köhler, Katrin Korb, Bettina Kulle, Heike Bickeböller BMC Genetics 2005, 6(Suppl 1):S55 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Application of the regression of offspring on mid-parent method to detect associations between single-nucleotide polymorphisms and the beta 2 electroencephalogram phenotype in the COGA data

Marie-Hélène Roy-Gagnon, Rasika A Mathias, Alexander F Wilson BMC Genetics 2005, 6(Suppl 1):S56 (30 December 2005)

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A comparison of discrete versus continuous environment in a variance components-based linkage analysis of the COGA data

Kevin R Viel, Diane M Warren, Alfonso Buil, Thomas D Dyer, Tom E Howard, Laura Almasy BMC Genetics 2005, 6(Suppl 1):S57 (30 December 2005)

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A variance component analysis on recombination rate in the COGA pedigrees

Lin Wang, Xin Xu BMC Genetics 2005, 6(Suppl 1):S58 (30 December 2005)

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Linkage and association analysis in pedigrees from different populations

Joseph Beyene, Jun Yan, Celia MT Greenwood BMC Genetics 2005, 6(Suppl 1):S59 (30 December 2005)

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Locally weighted transmission/disequilibrium test for genetic association analysis

Li Hsu, Xuesong Yu, Jeanine J Houwing-Duistermaat, Hae-Won Uh, Rachid El Galta, Jeremie JP Lebrec, Hua Tang BMC Genetics 2005, 6(Suppl 1):S60 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Optimizing the evidence for linkage by permuting marker order

Gyungah Jun, Yeunjoo Song, Sudha K Iyengar, Robert C Elston BMC Genetics 2005, 6(Suppl 1):S61 (30 December 2005)

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Comparison of family-based association tests in chromosome regions selected by linkage-based confidence intervals

Juan Lewinger, Sophia SF Lee, Joanna Biernacka, Long Wu, Haijiang Shi, Shelley B Bull BMC Genetics 2005, 6(Suppl 1):S62 (30 December 2005)

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Fine mapping – 19th century style

John Molitor, Keyan Zhao, Paul Marjoram BMC Genetics 2005, 6(Suppl 1):S63 (30 December 2005)

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Potts model for haplotype associations

Elena V Moltchanova, Janne Pitkäniemi, Laura Haapala BMC Genetics 2005, 6(Suppl 1):S64 (30 December 2005)

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Comparison of genotype- and haplotype-based approaches for fine-mapping of alcohol dependence using COGA data

Dushanthi Pinnaduwage, Laurent Briollais BMC Genetics 2005, 6(Suppl 1):S65 (30 December 2005)

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Will the real disease gene please stand up?

Neil Shephard, Sally John, Lon Cardon, Mark I McCarthy, Eleftheria Zeggini BMC Genetics 2005, 6(Suppl 1):S66 (30 December 2005)

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Fine-mapping using the weighted average method for a case-control study

Kijoung Song, Mohammed S Orloff, Qing Lu, Robert C Elston BMC Genetics 2005, 6(Suppl 1):S67 (30 December 2005)

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Application of family-based association testing to assess the genotype-phenotype association involved in complex traits using single-nucleotide polymorphisms

Ming-Hsi Wang, Mitchell Guo, Yin Y Shugart BMC Genetics 2005, 6(Suppl 1):S68 (30 December 2005)

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Robust testing of haplotype/disease association

Andrew S Allen, Glen A Satten BMC Genetics 2005, 6(Suppl 1):S69 (30 December 2005)

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Haplotype-sharing analysis using Mantel statistics for combined genetic effects

Lars Beckmann, Christine Fischer, Markus Obreiter, Michael Rabes, Jenny Chang-Claude BMC Genetics 2005, 6(Suppl 1):S70 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

A comparison of five methods for selecting tagging single-nucleotide polymorphisms

Kelly M Burkett, Mercedeh Ghadessi, Brad McNeney, Jinko Graham, Denise Daley BMC Genetics 2005, 6(Suppl 1):S71 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Strategies for selecting subsets of single-nucleotide polymorphisms to genotype in association studies

Joe M Butler, D Timothy Bishop, Jennifer H Barrett BMC Genetics 2005, 6(Suppl 1):S72 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Identification of tag single-nucleotide polymorphisms in regions with varying linkage disequilibrium

Priya Duggal, Elizabeth M Gillanders, Rasika A Mathias, Grace P Ibay, Alison P Klein, Agnes B Baffoe-Bonnie, Liang Ou, Ian P Dusenberry, Ya-Yu Tsai, Peter S Chines, Betty Q Doan, Joan E Bailey-Wilson BMC Genetics 2005, 6(Suppl 1):S73 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Fine-scale mapping in case-control samples using locus scoring and haplotype-sharing methods

Keith Humphreys, Mark M Iles BMC Genetics 2005, 6(Suppl 1):S74 (30 December 2005)

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Haplotype-sharing analysis for alcohol dependence based on quantitative traits and the Mantel statistic

Andre Kleensang, Daniel Franke, Inke R König, Andreas Ziegler BMC Genetics 2005, 6(Suppl 1):S75 (30 December 2005)

Abstract | Full text | PDF | PubMed

Comparisons of methods for linkage analysis and haplotype reconstruction using extended pedigree data

Shili Lin, Jie Ding, Crystal Dong, Zhenqiu Liu, Zhenxu J Ma, Shuyan Wan, Yan Xu BMC Genetics 2005, 6(Suppl 1):S76 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Haplotypic structure of the X chromosome in the COGA population sample and the quality of its reconstruction by extant software packages

Fabio Marroni, Chiara Toni, Benedetto Pennato, Ya-Yu Tsai, Pryia Duggal, Joan E Bailey-Wilson, Silvano Presciuttini BMC Genetics 2005, 6(Suppl 1):S77 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Comparison of type I error for multiple test corrections in large single-nucleotide polymorphism studies using principal components versus haplotype blocking algorithms

Kristin K Nicodemus, Wenlei Liu, Gary A Chase, Ya-Yu Tsai, M Daniele Fallin BMC Genetics 2005, 6(Suppl 1):S78 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Haplotype sharing correlation of alcohol dependence on chromosomes 1–6 in 93 nuclear families

Dajun Qian BMC Genetics 2005, 6(Suppl 1):S79 (30 December 2005)

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Accuracy of haplotype estimation in a region of low linkage disequilibrium

Christy L Avery, Lisa J Martin, Jeff T Williams, Kari E North BMC Genetics 2005, 6(Suppl 1):S80 (30 December 2005)

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An exploration of sex-specific linkage disequilibrium on chromosome X in Caucasians from the COGA study

Miranda E Cox, Joel K Campbell, Carl D Langefeld BMC Genetics 2005, 6(Suppl 1):S81 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Bias of allele-sharing linkage statistics in the presence of intermarker linkage disequilibrium

Ellen L Goode, Michael D Badzioch, Gail P Jarvik BMC Genetics 2005, 6(Suppl 1):S82 (30 December 2005)

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Examining the effect of linkage disequilibrium on multipoint linkage analysis

Qiqing Huang, Sanjay Shete, Michael Swartz, Christopher I Amos BMC Genetics 2005, 6(Suppl 1):S83 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

The efficacy of short tandem repeat polymorphisms versus single-nucleotide polymorphisms for resolving population structure

John SK Kauwe, Sarah Bertelsen, Laura Bierut, Gerald Dunn, Anthony L Hinrichs, Carol H Jin, Brian K Suarez BMC Genetics 2005, 6(Suppl 1):S84 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Evaluation of linkage disequilibrium and its effect on non-parametric multipoint linkage analysis using two high density single-nucleotide polymorphism mapping panels

Sarah Murray BMC Genetics 2005, 6(Suppl 1):S85 (30 December 2005)

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Linkage disequilibrium across two different single-nucleotide polymorphism genome scans

Juan Peralta, Thomas D Dyer, Diane M Warren, John Blangero, Laura Almasy BMC Genetics 2005, 6(Suppl 1):S86 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Modeling the effect of a genetic factor for a complex trait in a simulated population

Mathieu Bourgey, Anne-Louise Leutenegger, Emmanuelle Cousin, Catherine Bourgain, Marie-Claude Babron, Françoise Clerget-Darpoux BMC Genetics 2005, 6(Suppl 1):S87 (30 December 2005)

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Identification of polymorphisms explaining a linkage signal: application to the GAW14 simulated data

Ming-Huei Chen, Paul Van Eerdewegh, Josée Dupuis BMC Genetics 2005, 6(Suppl 1):S88 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

A comparison in association and linkage genome-wide scans for alcoholism susceptibility genes using single-nucleotide polymorphisms

Yen-Feng Chiu, Su-Yun Liu, Ya-Yu Tsai BMC Genetics 2005, 6(Suppl 1):S89 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Impact of non-ignorable missingness on genetic tests of linkage and/or association using case-parent trios

Chao-Yu Guo, Jing Cui, L Adrienne Cupples BMC Genetics 2005, 6(Suppl 1):S90 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

The quantitative trait linkage disequilibrium test: a more powerful alternative to the quantitative transmission disequilibrium test for use in the absence of population stratification

Lorena M Havill, Thomas D Dyer, Dawn K Richardson, Michael C Mahaney, John Blangero BMC Genetics 2005, 6(Suppl 1):S91 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Analysis of binary traits: testing association in the presence of linkage

Gudrun Jonasdottir, Juni Palmgren, Keith Humphreys BMC Genetics 2005, 6(Suppl 1):S92 (30 December 2005)

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Selection of single-nucleotide polymorphisms in disease association data

Jungnam Joo, Xin Tian, Gang Zheng, Jing-Ping Lin, Nancy L Geller BMC Genetics 2005, 6(Suppl 1):S93 (30 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Microsatellite linkage analysis, single-nucleotide polymorphisms, and haplotype associations with ECB21 in the COGA data

Aldi T Kraja, Ingrid B Borecki, Michael A Province BMC Genetics 2005, 6(Suppl 1):S94 (30 December 2005)

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A regression based transmission/disequilibrium test for binary traits: the power of joint tests for linkage and association

Emma K Larkin, Kevin C Cartier, Courtney Gray-McGuire BMC Genetics 2005, 6(Suppl 1):S95 (30 December 2005)

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Comparison of linkage and association strategies for quantitative traits using the COGA dataset

Matthew B McQueen, Amy Murphy, Peter Kraft, Jessica Su, Ross Lazarus, Nan M Laird, Christoph Lange, Kristel Van Steen BMC Genetics 2005, 6(Suppl 1):S96 (30 December 2005)

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Identifying genetic variation affecting a complex trait in simulated data: a comparison of meta-analysis with pooled data analysis

Xiaodong Wu, Donghui Kan, Richard S Cooper, Xiaofeng Zhu BMC Genetics 2005, 6(Suppl 1):S97 (30 December 2005)

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Comparing strategies for association mapping in samples with related individuals

Catherine Bourgain BMC Genetics 2005, 6(Suppl 1):S98 (30 December 2005)

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Using mixture models to characterize disease-related traits

Tao Duan, Stephen J Finch, Kenny Q Ye, Gary A Chase, Nancy R Mendell BMC Genetics 2005, 6(Suppl 1):S99 (30 December 2005)

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Linkage disequilibrium mapping via cladistic analysis of phase-unknown genotypes and inferred haplotypes in the Genetic Analysis Workshop 14 simulated data

Caroline Durrant, Andrew P Morris BMC Genetics 2005, 6(Suppl 1):S100 (30 December 2005)

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Methods to test for association between a disease and a multi-allelic marker applied to a candidate region

Rachid El Galta, Li Hsu, Jeanine J Houwing-Duistermaat BMC Genetics 2005, 6(Suppl 1):S101 (30 December 2005)

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Identification of susceptibility loci for complex diseases in a case-control association study using the Genetic Analysis Workshop 14 dataset

Kimberly F Kerstann, Kevin Jacobs, Xiaohong Yang, Andrew W Bergen, Lynn R Goldin, Alisa M Goldstein BMC Genetics 2005, 6(Suppl 1):S102 (30 December 2005)

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Comparisons of case-selection approaches based on allele sharing and/or disease severity index: application to the GAW14 simulated data

Chunyu Liu, L Adrienne Cupples, Josée Dupuis BMC Genetics 2005, 6(Suppl 1):S103 (30 December 2005)

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Hierarchical modeling in association studies of multiple phenotypes

Xin Liu, Eric Jorgenson, John S Witte BMC Genetics 2005, 6(Suppl 1):S104 (30 December 2005)

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Selecting cases from nuclear families for case-control association analysis

Rachael M Moore, Tracy Pinel, Jing Zhao, Ruth March, Ansar Jawaid BMC Genetics 2005, 6(Suppl 1):S105 (30 December 2005)

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Combining evidence for association from transmission disequilibrium and case-control studies using single-nucleotide polymorphisms

Hein Putter, Jeanine J Houwing-Duistermaat, Nico JD Nagelkerke BMC Genetics 2005, 6(Suppl 1):S106 (30 December 2005)

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Robust trend tests for genetic association in case-control studies using family data

Xin Tian, Jungnam Joo, Gang Zheng, Jing-Ping Lin BMC Genetics 2005, 6(Suppl 1):S107 (30 December 2005)

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How to quantify information loss due to phase ambiguity in haplotype case-control studies

Hae-Won Uh, Jeanine J Houwing-Duistermaat, Hein Putter, Hans C van Houwelingen BMC Genetics 2005, 6(Suppl 1):S108 (30 December 2005)

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Effects of population structure on genetic association studies

Hongyan Xu, Sanjay Shete BMC Genetics 2005, 6(Suppl 1):S109 (30 December 2005)

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A new family-based association test via a least-squares method

Song Yang, Jungnam Joo, Ziding Feng, Jing-Ping Lin BMC Genetics 2005, 6(Suppl 1):S110 (30 December 2005)

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Smoothing of the bivariate LOD score for non-normal quantitative traits

Alfonso Buil, Thomas D Dyer, Laura Almasy, John Blangero BMC Genetics 2005, 6(Suppl 1):S111 (30 December 2005)

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Identification of genes involved in alcohol consumption and cigarettes smoking

Mariza de Andrade, Curtis L Olswold, Joshua P Slusser, Larry A Tordsen, Elizabeth J Atkinson, Kari G Rabe, Susan L Slager BMC Genetics 2005, 6(Suppl 1):S112 (30 December 2005)

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A power study of bivariate LOD score analysis of a complex trait and fear/discomfort with strangers

Fei Ji, Dayoung Lee, Nancy Mendell BMC Genetics 2005, 6(Suppl 1):S113 (30 December 2005)

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Bivariate genome scans incorporating factor and principal component analyses to identify common genetic components of alcoholism, event-related potential, and electroencephalogram phenotypes

Jing-Ping Lin, Colin Wu BMC Genetics 2005, 6(Suppl 1):S114 (30 December 2005)

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Genomic screening in family-based association testing

Amy Murphy, Matthew B McQueen, Jessica Su, Peter Kraft, Ross Lazarus, Nan M Laird, Christoph Lange, Kristel Van Steen BMC Genetics 2005, 6(Suppl 1):S115 (30 December 2005)

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A Bayesian genome screening of maximum number of drinks as an alcoholism phenotype with the new Haseman-Elston method

Cheongeun Oh, Shuang Wang, Nianjun Liu, Liang Chen, Hongyu Zhao BMC Genetics 2005, 6(Suppl 1):S116 (30 December 2005)

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A comparison of univariate, bivariate, and trivariate whole-genome linkage screens of genetically correlated electrophysiological endophenotypes

Diane M Warren, Thomas D Dyer, Charles P Peterson, Michael C Mahaney, John Blangero, Laura Almasy BMC Genetics 2005, 6(Suppl 1):S117 (30 December 2005)

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Multivariate linkage analysis using the electrophysiological phenotypes in the COGA alcoholism data

Heping Zhang, Xiaoyun Zhong, Yuanqing Ye BMC Genetics 2005, 6(Suppl 1):S118 (30 December 2005)

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Genes, age, and alcoholism: analysis of GAW14 data

Victor Apprey, Joseph Afful, Jules P Harrell, Robert E Taylor, George E Bonney BMC Genetics 2005, 6(Suppl 1):S119 (30 December 2005)

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Effect of genotype × alcoholism interaction on linkage analysis of an alcoholism-related quantitative phenotype

Rector Arya, Thomas D Dyer, Diane M Warren, Christopher P Jenkinson, Ravindranath Duggirala, Laura Almasy BMC Genetics 2005, 6(Suppl 1):S120 (30 December 2005)

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Two novel quantitative trait linkage analysis statistics based on the posterior probability of linkage: application to the COGA families

Christopher W Bartlett, Veronica J Vieland BMC Genetics 2005, 6(Suppl 1):S121 (30 December 2005)

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Microsatellites versus single-nucleotide polymorphisms in linkage analysis for quantitative and qualitative measures

Gerald Dunn, Anthony L Hinrichs, Sarah Bertelsen, Carol H Jin, John SK Kauwe, Brian K Suarez, Laura J Bierut BMC Genetics 2005, 6(Suppl 1):S122 (30 December 2005)

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Quantitative trait locus-specific genotype × alcoholism interaction on linkage for evoked electroencephalogram oscillations

Lisa J Martin, Christy L Avery, Jeff T Williams, Kari E North BMC Genetics 2005, 6(Suppl 1):S123 (30 December 2005)

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Genetic analysis of the maximum drinks phenotype

Scott F Saccone, Nancy L Saccone, Rosalind J Neuman, John P Rice BMC Genetics 2005, 6(Suppl 1):S124 (30 December 2005)

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COGA phenotypes and linkages on chromosome 2

Howard W Wiener, Rodney CP Go, Hemant Tiwari, Varghese George, Grier P Page BMC Genetics 2005, 6(Suppl 1):S125 (30 December 2005)

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A study of genetic association with electrophysiological measures related to alcoholism: GAW14 data

Ao Yuan, Victor Apprey, Jules P Harrell, Robert E Taylor, George E Bonney BMC Genetics 2005, 6(Suppl 1):S126 (30 December 2005)

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Mixed-effects Cox models of alcohol dependence in extended families

Jing Zhao BMC Genetics 2005, 6(Suppl 1):S127 (30 December 2005)

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A genome-wide linkage and association study using COGA data

Xiaofeng Zhu, Richard Cooper, Donghui Kan, Guichan Cao, Xiaodong Wu BMC Genetics 2005, 6(Suppl 1):S128 (30 December 2005)

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An artificial neural network for estimating haplotype frequencies

Kevin C Cartier, Daniel Baechle BMC Genetics 2005, 6(Suppl 1):S129 (30 December 2005)

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Whole-genome association studies on alcoholism comparing different phenotypes using single-nucleotide polymorphisms and microsatellites

Liang Chen, Nianjun Liu, Shuang Wang, Cheongeun Oh, Nicholas J Carriero, Hongyu Zhao BMC Genetics 2005, 6(Suppl 1):S130 (30 December 2005)

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Diagnosis of alcoholism based on neural network analysis of phenotypic risk factors

Catherine T Falk BMC Genetics 2005, 6(Suppl 1):S131 (30 December 2005)

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Boosting alternating decision trees modeling of disease trait information

Kuang-Yu Liu, Jennifer Lin, Xiaobo Zhou, Stephen TC Wong BMC Genetics 2005, 6(Suppl 1):S132 (30 December 2005)

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Data mining of the GAW14 simulated data using rough set theory and tree-based methods

Liang-Ying Wei, Cheng-Lung Huang, Chien-Hsiun Chen BMC Genetics 2005, 6(Suppl 1):S133 (30 December 2005)

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Power and type I error rate of false discovery rate approaches in genome-wide association studies

Qiong Yang, Jing Cui, Irmarie Chazaro, L Adrienne Cupples, Serkalem Demissie BMC Genetics 2005, 6(Suppl 1):S134 (30 December 2005)

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A genome-wide tree- and forest-based association analysis of comorbidity of alcoholism and smoking

Yuanqing Ye, Xiaoyun Zhong, Heping Zhang BMC Genetics 2005, 6(Suppl 1):S135 (30 December 2005)

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Analysis of alcoholism data using support vector machines

Robert Yu, Sanjay Shete BMC Genetics 2005, 6(Suppl 1):S136 (30 December 2005)

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Use of susceptibility scoring in conjunction with the genotypic transmission disequilibrium test

Kelly S Benke, Gary A Chase, Daniele M Fallin BMC Genetics 2005, 6(Suppl 1):S137 (30 December 2005)

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A new Bayesian approach incorporating covariate information for heterogeneity and its comparison with HLOD

Swati Biswas, Shili Lin, Donald A Berry BMC Genetics 2005, 6(Suppl 1):S138 (30 December 2005)

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Construction of endophenotypes for complex diseases in the presence of heterogeneity

Chien-Hsiun Chen, Chih-Ling Kuo, Michael CP Lin, Yu-Jen Liang, Cathy SJ Fann BMC Genetics 2005, 6(Suppl 1):S139 (30 December 2005)

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Impact of the diagnosis definition on linkage detection

Marie-Hélène Dizier, Emmanuelle Génin, Marie Babron, Catherine Bourgain BMC Genetics 2005, 6(Suppl 1):S140 (30 December 2005)

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Performance comparison of two-point linkage methods using microsatellite markers flanking known disease locations

Mark W Logue, Andrew W George, M Anne Spence, Veronica J Vieland BMC Genetics 2005, 6(Suppl 1):S141 (30 December 2005)

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Standard linkage and association methods identify the mechanism of four susceptibility genes for a simulated complex disease

Nathan Pankratz, Ellen Edenberg, Tatiana Foroud BMC Genetics 2005, 6(Suppl 1):S142 (30 December 2005)

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Analysis of alcohol dependence phenotype in the COGA families using covariates to detect linkage

Brian H Reck, Nandita Mukhopadhyay, Hui-Ju Tsai, Daniel E Weeks BMC Genetics 2005, 6(Suppl 1):S143 (30 December 2005)

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Methods for detecting gene × gene interaction in multiplex extended pedigrees

Guy N Brock, Brion S Maher, Toby H Goldstein, Margaret E Cooper, Mary L Marazita BMC Genetics 2005, 6(Suppl 1):S144 (30 December 2005)

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Extension of multifactor dimensionality reduction for identifying multilocus effects in the GAW14 simulated data

Hao Mei, Deqiong Ma, Allison Ashley-Koch, Eden R Martin BMC Genetics 2005, 6(Suppl 1):S145 (30 December 2005)

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Multifactor-dimensionality reduction versus family-based association tests in detecting susceptibility loci in discordant sib-pair studies

Yan Meng, Qianli Ma, Yi Yu, John Farrell, Lindsay A Farrer, Marsha A Wilcox BMC Genetics 2005, 6(Suppl 1):S146 (30 December 2005)

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Identifying susceptibility genes by using joint tests of association and linkage and accounting for epistasis

Joshua Millstein, Kimberly D Siegmund, David V Conti, W James Gauderman BMC Genetics 2005, 6(Suppl 1):S147 (30 December 2005)

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Searching for epistatic interactions in nuclear families using conditional linkage analysis

Svati H Shah, Michael A Schmidt, Hao Mei, William K Scott, Elizabeth R Hauser, Silke Schmidt BMC Genetics 2005, 6(Suppl 1):S148 (30 December 2005)

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Analysis of genes for alcoholism using two-disease-locus models

Chih-Chieh Wu, Sanjay Shete BMC Genetics 2005, 6(Suppl 1):S149 (30 December 2005)

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Precision and type I error rate in the presence of genotype errors and missing parental data: a comparison between the original transmission disequilibrium test (TDT) and TDTae statistics

Sandra Barral, Chad Haynes, Mark A Levenstien, Derek Gordon BMC Genetics 2005, 6(Suppl 1):S150 (30 December 2005)

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The effect of missing data on linkage disequilibrium mapping and haplotype association analysis in the GAW14 simulated datasets

Pamela A McCaskie, Kim W Carter, Simon R McCaskie, Lyle J Palmer BMC Genetics 2005, 6(Suppl 1):S151 (30 December 2005)

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An analysis of identical single-nucleotide polymorphisms genotyped by two different platforms

Brian K Suarez, Chelsea Taylor, Sarah Bertelsen, Laura J Bierut, Gerald Dunn, Carol H Jin, John SK Kauwe, Andrew D Paterson, Anthony L Hinrichs BMC Genetics 2005, 6(Suppl 1):S152 (30 December 2005)

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Effect of genotyping error in model-free linkage analysis using microsatellite or single-nucleotide polymorphism marker maps

Cheryl L Thompson, Dan Baechle, Qing Lu, George Mathew, Yeunjoo Song, Sudha K Iyengar, Courtney Gray-McGuire, Katrina AB Goddard BMC Genetics 2005, 6(Suppl 1):S153 (30 December 2005)

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Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research

Nathan L Tintle, Kwangmi Ahn, Nancy Mendell, Derek Gordon, Stephen J Finch BMC Genetics 2005, 6(Suppl 1):S154 (30 December 2005)

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Evaluating outlier loci and their effect on the identification of pedigree errors

Ke-Sheng Wang, Michelle Liu, Andrew D Paterson BMC Genetics 2005, 6(Suppl 1):S155 (30 December 2005)

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Linkage analysis of alcoholism-related electrophysiological phenotypes: genome scans with microsatellites compared to single-nucleotide polymorphisms

Jocelyn F Bautista, Shannon RE Quade, Antonio R Parrado, Katrina AB Goddard BMC Genetics 2005, 6(Suppl 1):S156 (30 December 2005)

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X chromosome effects and their interactions with mitochondrial effects

Jack W Kent, Loren R Lease, Michael C Mahaney, Thomas D Dyer, Laura Almasy, John Blangero BMC Genetics 2005, 6(Suppl 1):S157 (30 December 2005)

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Mitochondrial genetic effects on latent class variables associated with susceptibility to alcoholism

Loren R Lease, Deidre A Winnier, Jeff T Williams, Thomas D Dyer, Laura Almasy, Michael C Mahaney BMC Genetics 2005, 6(Suppl 1):S158 (30 December 2005)

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A simple nonparametric multipoint procedure to test for linkage through mothers or fathers as well as imprinting effects in the presence of linkage

Mathieu Lemire BMC Genetics 2005, 6(Suppl 1):S159 (30 December 2005)

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A genome scan for parent-of-origin linkage effects in alcoholism

Xiao-Qing Liu, Celia MT Greenwood, Ke-Sheng Wang, Andrew D Paterson BMC Genetics 2005, 6(Suppl 1):S160 (30 December 2005)

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Genetic imprinting analysis for alcoholism genes using variance components approach

Sanjay Shete, Robert Yu BMC Genetics 2005, 6(Suppl 1):S161 (30 December 2005)

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Linkage analysis of alcohol dependence using MOD scores

Konstantin Strauch, Robert Fürst, Franz Rüschendorf, Christine Windemuth, Johannes Dietter, Antonia Flaquer, Max P Baur, Thomas F Wienker BMC Genetics 2005, 6(Suppl 1):S162 (30 December 2005)

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