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Genetic dissection of MHC-associated susceptibility to Lepeophtheirus salmonis in Atlantic salmon
Karim Gharbi, Kevin A Glover, Louise C Stone, Elizabeth S MacDonald, Louise Matthews, Unni Grimholt, Michael J Stear BMC Genetics 2009, 10:20 (27 April 2009)
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High-resolution haplotype block structure in the cattle genome
Rafael Villa-Angulo, Lakshmi K Matukumalli, Clare A Gill, Jungwoo Choi, Curtis P Van Tassell, John J Grefenstette BMC Genetics 2009, 10:19 (24 April 2009)
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Editor’s summary
The haplotype block structure of beef and dairy breeds of cattle are unexpectedly similar and estimates of effective population sizes reflect ancient cattle domestication and more recent population bottlenecks.
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A high density linkage map of the bovine genome
Juan A Arias, Mike Keehan, Paul Fisher, Wouter Coppieters, Richard Spelman BMC Genetics 2009, 10:18 (24 April 2009)
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Big mountains but small barriers: Population genetic structure of the Chinese wood frog (Rana chensinensis) in the Tsinling and Daba Mountain region of northern China
Aibin Zhan, Cheng Li, Jinzhong Fu BMC Genetics 2009, 10:17 (9 April 2009)
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Robust physical methods that enrich genomic regions identical by descent for linkage studies: confirmation of a locus for osteogenesis imperfecta
Peter Brooks, Charles Marcaillou, Maud Vanpeene, Jean-Paul Saraiva, Daniel Stockholm, Stephan Francke, Reyna Favis, Nadine Cohen, Francis Rousseau, Frédéric Tores, Pierre Lindenbaum, Jörg Hager, Anne Philippi BMC Genetics 2009, 10:16 (30 March 2009)
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Copy number variation in African Americans
Joseph P McElroy, Matthew R Nelson, Stacy J Caillier, Jorge R Oksenberg BMC Genetics 2009, 10:15 (24 March 2009)
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Editor’s summary
The generation of the first copy number variation (CNV) map in African Americans identified 1362 CNVs, two of which displayed a marked difference in frequency compared to White Americans.
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Mutations in genes involved in nonsense mediated decay ameliorate the phenotype of sel-12 mutants with amber stop mutations in Caenorhabditis elegans
Alisson M Gontijo, Sylvie Aubert, Ingele Roelens, Bernard Lakowski BMC Genetics 2009, 10:14 (20 March 2009)
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Monoallelic maternal expression of STAT5A affects embryonic survival in cattle
Hasan Khatib, Christian Maltecca, Ricky L Monson, Valerie Schutzkus, Jack J Rutledge BMC Genetics 2009, 10:13 (10 March 2009)
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A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines
Melissa K Boles, Bonney M Wilkinson, Andrea Maxwell, Lihua Lai, Alea A Mills, Ichiko Nishijima, Andrew P Salinger, Ivan Moskowitz, Karen K Hirschi, Bin Liu, Allan Bradley, Monica J Justice BMC Genetics 2009, 10:12 (6 March 2009)
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Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies
Thaung Hlaing, Willoughby Tun-Lin, Pradya Somboon, Duong Socheat, To Setha, Sein Min, Moh Chang, Catherine Walton BMC Genetics 2009, 10:11 (6 March 2009)
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Identification and association of the single nucleotide polymorphisms in calpain3 (CAPN3) gene with carcass traits in chickens
Zeng-Rong Zhang, Yi-Ping Liu, Yong-Gang Yao, Xiao-Song Jiang, Hua-Rui Du, Qing Zhu BMC Genetics 2009, 10:10 (5 March 2009)
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Full sib pens of pigs are not suitable to identify variance component of associative effect: a simulation study using Gibbs Sampling
Jiqiu Cheng, Steven Janssens, Nadine Buys BMC Genetics 2009, 10:9 (27 February 2009)
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Mitochondrial DNA haplogroup H structure in North Africa
Hajer Ennafaa, Vicente M Cabrera, Khaled K Abu-Amero, Ana M González, Mohamed B Amor, Rym Bouhaha, Nduna Dzimiri, Amel B Elgaaïed, José M Larruga BMC Genetics 2009, 10:8 (25 February 2009)
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Landscape genomics and biased FST approaches reveal single nucleotide polymorphisms under selection in goat breeds of North-East Mediterranean
Lorraine Pariset, Stephane Joost, Paolo Marsan, Alessio Valentini, Econogene Consortium (EC) BMC Genetics 2009, 10:7 (19 February 2009)
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Genome-wide QTL mapping for three traits related to teat number in a White Duroc × Erhualian pig resource population
Nengshui Ding, Yuanmei Guo, Christoph Knorr, Junwu Ma, Huirong Mao, Lütao Lan, Shijun Xiao, Huashui Ai, Chris S Haley, Bertram Brenig, Lusheng Huang BMC Genetics 2009, 10:6 (18 February 2009)
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Determining the effectiveness of High Resolution Melting analysis for SNP genotyping and mutation scanning at the TP53 locus
Sonia Garritano, Federica Gemignani, Catherine Voegele, Tú Nguyen-Dumont, Florence Le Calvez-Kelm, Deepika De Silva, Fabienne Lesueur, Stefano Landi, Sean V Tavtigian BMC Genetics 2009, 10:5 (17 February 2009)
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Novel mutations in the VKORC1 gene of wild rats and mice – a response to 50 years of selection pressure by warfarin?
Simone Rost, Hans-Joachim Pelz, Sandra Menzel, Alan D MacNicoll, Vanina León, Ki-Joon Song, Thomas Jäkel, Johannes Oldenburg, Clemens R Müller BMC Genetics 2009, 10:4 (6 February 2009)
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Editor’s summary
Wild rats from areas exposed to warfarin carry new polymorphisms that modify function in VKORC1, the coagulation enzyme targeted by the poison, confirming that VKORC1 gene evolution is still the key to resistance.
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Impact of genotyping errors on the type I error rate and the power of haplotype-based association methods
Vivien Marquard, Lars Beckmann, Iris M Heid, Claudia Lamina, Jenny Chang-Claude BMC Genetics 2009, 10:3 (29 January 2009)
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Genotyping errors can lead to false positive results in genetic association studies, but simulations show that three commonly used statistical tests remain powerful, given a realistic genotyping error rate of 0.2% per locus.
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Mapping of five candidate sex-determining loci in rainbow trout (Oncorhynchus mykiss)
Mahmoud A Alfaqih, Joseph P Brunelli, Robert E Drew, Gary H Thorgaard BMC Genetics 2009, 10:2 (15 January 2009)
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Genetic analysis of local Vietnamese chickens provides evidence of gene flow from wild to domestic populations
C Berthouly, G Leroy, T Nhu Van, H Hoang Thanh, B Bed'Hom, B Trong Nguyen, C Vu Chi, F Monicat, M Tixier-Boichard, E Verrier, J-C Maillard, X Rognon BMC Genetics 2009, 10:1 (8 January 2009)
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A large-scale survey of genetic copy number variations among Han Chinese residing in Taiwan
Chien-Hsing Lin, Ling-Hui Li, Sheng-Feng Ho, Tzu-Po Chuang, Jer-Yuarn Wu, Yuan-Tsong Chen, Cathy SJ Fann BMC Genetics 2008, 9:92 (24 December 2008)
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Mapping of the transcription start site (TSS) and identification of SNPs in the bovine neuropeptide Y (NPY) gene
Bojlul Bahar, Torres Sweeney BMC Genetics 2008, 9:91 (23 December 2008)
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A systematic search for SNPs/haplotypes associated with disease phenotypes using a haplotype-based stepwise procedure
Yin Yang, Shuying Li, Jason W Chien, Jessica Andriesen, Lue Zhao BMC Genetics 2008, 9:90 (22 December 2008)
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A multilocus assay reveals high nucleotide diversity and limited differentiation among Scandinavian willow grouse (Lagopus lagopus)
Sofia Berlin, Maria Quintela, Jacob Höglund BMC Genetics 2008, 9:89 (19 December 2008)
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Equine Multiple Congenital Ocular Anomalies maps to a 4.9 megabase interval on horse chromosome 6
Lisa S Andersson, Rytis Juras, David T Ramsey, Jessica Eason-Butler, Susan Ewart, Gus Cothran, Gabriella Lindgren BMC Genetics 2008, 9:88 (19 December 2008)
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Genetic characterisation of farmed rainbow trout in Norway: intra- and inter-strain variation reveals potential for identification of escapees
Kevin A Glover BMC Genetics 2008, 9:87 (16 December 2008)
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Editor’s summary
The escape of non-native, farmed rainbow trout, Oncoryhnchus mykiss, may harm native salmonid populations, but now microsatellite-based assignment testing of escapees can be used to detect their most likely captive stock of origin.
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Genetic variation in South Indian castes: evidence from Y-chromosome, mitochondrial, and autosomal polymorphisms
WS Watkins, R Thara, BJ Mowry, Y Zhang, DJ Witherspoon, W Tolpinrud, MJ Bamshad, S Tirupati, R Padmavati, H Smith, D Nancarrow, C Filippich, LB Jorde BMC Genetics 2008, 9:86 (12 December 2008)
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Editor’s summary
The effects of both historical migrations and the caste system are reflected in the genetic structure of Y-chromosomes, autosomes and mitochondrial DNA in two populations from Tamil Nadu and Andhra Pradesh in southern India.
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Imputation of missing genotypes: an empirical evaluation of IMPUTE
Zhenming Zhao, Nadia Timofeev, Stephen W Hartley, David HK Chui, Supan Fucharoen, Thomas T Perls, Martin H Steinberg, Clinton T Baldwin, Paola Sebastiani BMC Genetics 2008, 9:85 (12 December 2008)
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Association between fatty acid compositions and genotypes of FABP4 and LXR-alpha in Japanese Black cattle
Shogo Hoashi, Tomoko Hinenoya, Atsuko Tanaka, Hideki Ohsaki, Shinji Sasazaki, Masaaki Taniguchi, Kenji Oyama, Fumio Mukai, Hideyuki Mannen BMC Genetics 2008, 9:84 (11 December 2008)
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Comparison of nonsense-mediated mRNA decay efficiency in various murine tissues
Almoutassem B Zetoune, Sandra Fontanière, Delphine Magnin, Olga Anczuków, Monique Buisson, Chang X Zhang, Sylvie Mazoyer BMC Genetics 2008, 9:83 (5 December 2008)
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Multiple-trait quantitative trait locus mapping with incomplete phenotypic data
Zhigang Guo, James C Nelson BMC Genetics 2008, 9:82 (5 December 2008)
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SNP discovery in swine by reduced representation and high throughput pyrosequencing
Ralph T Wiedmann, Timothy PL Smith, Dan J Nonneman BMC Genetics 2008, 9:81 (4 December 2008)
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Editor’s summary
Longer-read pyrosequencing-based technologies have identified a large number of randomly distributed single nucleotide polymorphisms (SNPs) in pigs, enabling genotyping of commercial pig populations to proceed more easily
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A globally occurring indel polymorphism in the promoter of the IFNA2 gene is not associated with severity of malaria but with the positivity rate of HCV
Cristina Tena-Tomás, Iara de Messias-Reason, Le H Song, Jürgen Tomiuk, Peter G Kemsner, Jürgen FJ Kun BMC Genetics 2008, 9:80 (3 December 2008)
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Gene flow and genetic structure in the Galician population (NW Spain) according to Alu insertions
Tito A Varela, José Fariña, Lois Diéguez, Rosa Lodeiro BMC Genetics 2008, 9:79 (2 December 2008)
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Genomic complexity of the variable region-containing chitin-binding proteins in amphioxus
Larry J Dishaw, M Gail Mueller, Natasha Gwatney, John P Cannon, Robert N Haire, Ronda T Litman, Chris T Amemiya, Tatsuya Ota, Lee Rowen, Gustavo Glusman, Gary W Litman BMC Genetics 2008, 9:78 (1 December 2008)
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Simple sequence repeat markers useful for sorghum downy mildew (Peronosclerospora sorghi) and related species
Ramasamy Perumal, Padmavathi Nimmakayala, Saradha R Erattaimuthu, Eun-Gyu No, Umesh K Reddy, Louis K Prom, Gary N Odvody, Douglas G Luster, Clint W Magill BMC Genetics 2008, 9:77 (29 November 2008)
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Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow
Murray P Cox, August E Woerner, Jeffrey D Wall, Michael F Hammer BMC Genetics 2008, 9:76 (27 November 2008)
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Editor’s summary
X-chromosome evolution shows that because African populations have larger effective population sizes but less gene flow than non-Africans, the effective migration rates are similar within Africa and Eurasia under an isolation-within-migration (IM) model.
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Chromosomal evidence for a putative cryptic species in the Gymnotus carapo species-complex (Gymnotiformes, Gymnotidae)
Susana SR Milhomem, Julio C Pieczarka, William GR Crampton, Danillo S Silva, Augusto CP De Souza, Jaime R Carvalho, Cleusa Y Nagamachi BMC Genetics 2008, 9:75 (25 November 2008)
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A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
Caird E Rexroad, Yniv Palti, Scott A Gahr, Roger L Vallejo BMC Genetics 2008, 9:74 (19 November 2008)
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Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork
Arnis Druka, Ilze Druka, Arthur G Centeno, Hongqiang Li, Zhaohui Sun, William TB Thomas, Nicola Bonar, Brian J Steffenson, Steven E Ullrich, Andris Kleinhofs, Roger P Wise, Timothy J Close, Elena Potokina, Zewei Luo, Carola Wagner, Günther F Schweizer, David F Marshall, Michael J Kearsey, Robert W Williams, Robbie Waugh BMC Genetics 2008, 9:73 (18 November 2008)
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Heterozygosity increases microsatellite mutation rate, linking it to demographic history
William Amos, Jonathan Flint, Xin Xu BMC Genetics 2008, 9:72 (14 November 2008)
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Application of two machine learning algorithms to genetic association studies in the presence of covariates
Bareng AS Nonyane, Andrea S Foulkes BMC Genetics 2008, 9:71 (14 November 2008)
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Polymorphisms of the IGF1R gene and their genetic effects on chicken early growth and carcass traits
Mingming Lei, Xia Peng, Min Zhou, Chenglong Luo, Qinghua Nie, Xiquan Zhang BMC Genetics 2008, 9:70 (7 November 2008)
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A Strategy to Setup Codominant Microsatellite Analysis for High-Resolution-Melting-Curve-Analysis (HRM)
Eduard Mader, Brigitte Lukas, Johannes Novak BMC Genetics 2008, 9:69 (3 November 2008)
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Fully Bayesian tests of neutrality using genealogical summary statistics
Alexei J Drummond, Marc A Suchard BMC Genetics 2008, 9:68 (31 October 2008)
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Canine fibroblast growth factor receptor 3 sequence is conserved across dogs of divergent skeletal size
Logan B Smith, Danika L Bannasch, Amy E Young, Deborah I Grossman, Janelle M Belanger, Anita M Oberbauer BMC Genetics 2008, 9:67 (21 October 2008)
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Calculating expected DNA remnants from ancient founding events in human population genetics
Andrew Stacey, Nathan C Sheffield, Keith A Crandall BMC Genetics 2008, 9:66 (17 October 2008)
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Homoeologous gene silencing in tissue cultured wheat callus
Andrew Bottley, Natalie H Chapman, Robert MD Koebner BMC Genetics 2008, 9:65 (17 October 2008)
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A highly polymorphic insertion in the Y-chromosome amelogenin gene can be used for evolutionary biology, population genetics and sexing in Cetacea and Artiodactyla
Matthias Macé, Brigitte Crouau-Roy BMC Genetics 2008, 9:64 (16 October 2008)
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A genome-wide scan for quantitative trait loci affecting limb bone lengths and areal bone mineral density of the distal femur in a White Duroc × Erhualian F2 population
Huirong Mao, Yuanmei Guo, Guangcheng Yang, Bin Yang, Jun Ren, Sanfeng Liu, Huashui Ai, Junwu Ma, Bertram Brenig, Lusheng Huang BMC Genetics 2008, 9:63 (8 October 2008)
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