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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Hans Zauner PhD
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| | BMC Evolutionary Biology, Volume 5 |
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Research article
  
Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae
Christopher L Parkinson, Jeffrey P Mower, Yin-Long Qiu, Andrew J Shirk, Keming Song, Nelson D Young, Claude W dePamphilis, Jeffrey D Palmer
BMC Evolutionary Biology 2005, 5:73 (20December2005)
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Research article
Genome-wide comparative analysis of the IQD gene families in Arabidopsis thaliana and Oryza sativa
Steffen Abel, Tatyana Savchenko, Maggie Levy
BMC Evolutionary Biology 2005, 5:72 (20December2005)
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Research article
The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny
John W Stiller, Leslie Harrell
BMC Evolutionary Biology 2005, 5:71 (9December2005)
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Research article
Molecular dating of caprines using ancient DNA sequences of Myotragus balearicus, an extinct endemic Balearic mammal
Carles Lalueza-Fox, Jose Castresana, Lourdes Sampietro, Tom s Marqu s-Bonet, Josep Antoni Alcover, Jaume Bertranpetit
BMC Evolutionary Biology 2005, 5:70 (6December2005)
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Research article
Evolution and origin of merlin, the product of the Neurofibromatosis type 2 (NF2) tumor-suppressor gene
Kseniya Golovnina, Alexander Blinov, Elena M Akhmametyeva, Leonid V Omelyanchuk, Long-Sheng Chang
BMC Evolutionary Biology 2005, 5:69 (2December2005)
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Research article
Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA
Debashish Bhattacharya, Val rie Reeb, Dawn M Simon, Fran ois Lutzoni
BMC Evolutionary Biology 2005, 5:68 (21November2005)
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Research article
The Enhancer of split and Achaete-Scute complexes of Drosophilids derived from simple ur-complexes preserved in mosquito and honeybee
Rebekka Schlatter, Dieter Maier
BMC Evolutionary Biology 2005, 5:67 (17November2005)
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Research article
Coiled-coil protein composition of 22 proteomes  differences and common themes in subcellular infrastructure and traffic control
Annkatrin Rose, Shannon J Schraegle, Eric A Stahlberg, Iris Meier
BMC Evolutionary Biology 2005, 5:66 (16November2005)
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Research article
Testing for adaptive evolution of the female reproductive protein ZPC in mammals, birds and fishes reveals problems with the M7-M8 likelihood ratio test
Sofia Berlin, Nick GC Smith
BMC Evolutionary Biology 2005, 5:65 (10November2005)
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Research article
Evolution of virulence: coinfection and propagule production in spore-producing parasites
Curtis M Lively
BMC Evolutionary Biology 2005, 5:64 (10November2005)
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Methodology article
Exploration of phylogenetic data using a global sequence analysis method
Charles Chapus, Christine Dufraigne, Scott Edwards, Alain Giron, Bernard Fertil, Patrick Deschavanne
BMC Evolutionary Biology 2005, 5:63 (9November2005)
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Research article
Unusual linkage patterns of ligands and their cognate receptors indicate a novel reason for non-random gene order in the human genome
Laurence D Hurst, Martin J Lercher
BMC Evolutionary Biology 2005, 5:62 (8November2005)
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Research article
Genetic covariance between indices of body condition and immunocompetence in a passerine bird
Deborah J Gleeson, Mark W Blows, Ian PF Owens
BMC Evolutionary Biology 2005, 5:61 (7November2005)
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Research article
Avoid, attack or do both? Behavioral and physiological adaptations in natural enemies faced with novel hosts
Corinne Vacher, Sam P Brown, Michael E Hochberg
BMC Evolutionary Biology 2005, 5:60 (4November2005)
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Research article
Why do snails have hairs? A Bayesian inference of character evolution
Markus Pfenninger, Magda Hrab kov, Dirk Steinke, Aline Dpraz
BMC Evolutionary Biology 2005, 5:59 (4November2005)
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Methodology article
The efficiency of different search strategies in estimating parsimony jackknife, bootstrap, and Bremer support
Kai F M ller
BMC Evolutionary Biology 2005, 5:58 (29October2005)
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Research article
Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance
Marina V Omelchenko, Yuri I Wolf, Elena K Gaidamakova, Vera Y Matrosova, Alexander Vasilenko, Min Zhai, Michael J Daly, Eugene V Koonin, Kira S Makarova
BMC Evolutionary Biology 2005, 5:57 (20October2005)
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Research article
Lineage-specific variations of congruent evolution among DNA sequences from three genomes, and relaxed selective constraints on rbcL in Cryptomonas (Cryptophyceae)
Kerstin Hoef-Emden, Hoang-Dung Tran, Michael Melkonian
BMC Evolutionary Biology 2005, 5:56 (18October2005)
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Research article
Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales
Gabriela Guerrero, Humberto Peralta, Alejandro Aguilar, Rafael D az, Miguel Angel Villalobos, Arturo Medrano-Soto, Jaime Mora
BMC Evolutionary Biology 2005, 5:55 (17October2005)
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Research article
Mammalian BEX, WEX and GASP genes: Coding and non-coding chimaerism sustained by gene conversion events
Eitan E Winter, Chris P Ponting
BMC Evolutionary Biology 2005, 5:54 (12October2005)
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Research article
The key role for local base order in the generation of multiple forms of China HIV-1 B'/C intersubtype recombinants
Chi-Yu Zhang, Ji-Fu Wei, Shao-Heng He
BMC Evolutionary Biology 2005, 5:53 (7October2005)
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Research article
Evidence of recombination among early-vaccination era measles virus strains
Mikkel H Schierup, Carl H Mordhorst, Claude P Muller, Laurids S Christensen
BMC Evolutionary Biology 2005, 5:52 (6October2005)
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Research article
Tracking Alu evolution in New World primates
David A Ray, Mark A Batzer
BMC Evolutionary Biology 2005, 5:51 (6October2005)
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Research article
Heterotachy and long-branch attraction in phylogenetics
Herv Philippe, Yan Zhou, Henner Brinkmann, Nicolas Rodrigue, Frdric Delsuc
BMC Evolutionary Biology 2005, 5:50 (6October2005)
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Research article
Late Quaternary loss of genetic diversity in muskox (Ovibos)
Ross DE MacPhee, Alexei N Tikhonov, Dick Mol, Alex D Greenwood
BMC Evolutionary Biology 2005, 5:49 (6October2005)
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Research article
Phylogenetic analysis of eIF4E-family members
Bhavesh Joshi, Kibwe Lee, Dennis L Maeder, Rosemary Jagus
BMC Evolutionary Biology 2005, 5:48 (28September2005)
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Research article
A comparison of variation between a MHC pseudogene and microsatellite loci of the little greenbul (Andropadus virens)
Andres Aguilar, Thomas B Smith, Robert K Wayne
BMC Evolutionary Biology 2005, 5:47 (13September2005)
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Research article
Ribosomal intergenic spacer (IGS) length variation across the Drosophilinae (Diptera: Drosophilidae)
Mariana Mateos, Therese A Markow
BMC Evolutionary Biology 2005, 5:46 (19August2005)
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Research article
An ancient spliceosomal intron in the ribosomal protein L7a gene (Rpl7a) of Giardia lamblia
Anthony G Russell, Timothy E Shutt, Russell F Watkins, Michael W Gray
BMC Evolutionary Biology 2005, 5:45 (18August2005)
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Correspondence
Quasispecies theory in the context of population genetics
Claus O Wilke
BMC Evolutionary Biology 2005, 5:44 (17August2005)
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Research article
The genomic environment around the Aromatase gene: evolutionary insights
L Filipe C Castro, Miguel M Santos, Maria A Reis-Henriques
BMC Evolutionary Biology 2005, 5:43 (12August2005)
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Research article
Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study
Mircea Podar, Jonathan R Eads, Toby H Richardson
BMC Evolutionary Biology 2005, 5:42 (6August2005)
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Research article
Genome wide survey of G protein-coupled receptors in Tetraodon nigroviridis
Raghu Prasad Rao Metpally, Ramanathan Sowdhamini
BMC Evolutionary Biology 2005, 5:41 (15July2005)
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Research article
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus
Christina M Laukaitis, Stephen R Dlouhy, Richard D Emes, Chris P Ponting, Robert C Karn
BMC Evolutionary Biology 2005, 5:40 (14July2005)
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Research article
Conservation of pregnancy-specific glycoprotein (PSG) N domains following independent expansions of the gene families in rodents and primates
Andrew S McLellan, Wolfgang Zimmermann, Tom Moore
BMC Evolutionary Biology 2005, 5:39 (29June2005)
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Research article
Discovery of the photosynthetic relatives of the "Maltese mushroom" Cynomorium
Daniel L Nickrent, Joshua P Der, Frank E Anderson
BMC Evolutionary Biology 2005, 5:38 (21June2005)
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Research article
Mating-induced reduction in accessory reproductive organ size in the stalk-eyed fly Cyrtodiopsis dalmanni
David W Rogers, Tracey Chapman, Kevin Fowler, Andrew Pomiankowski
BMC Evolutionary Biology 2005, 5:37 (9June2005)
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Research article
An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences
Cline Brochier, Patrick Forterre, Simonetta Gribaldo
BMC Evolutionary Biology 2005, 5:36 (2June2005)
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Research article
Evolutionary history of Wolbachia infections in the fire ant Solenopsis invicta
Michael E Ahrens, Dewayne Shoemaker
BMC Evolutionary Biology 2005, 5:35 (31May2005)
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Research article
Automatic selection of representative proteins for bacterial phylogeny
Marshall Bern, David Goldberg
BMC Evolutionary Biology 2005, 5:34 (31May2005)
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Research article
Do orthologous gene phylogenies really support tree-thinking?
E Bapteste, E Susko, J Leigh, D MacLeod, RL Charlebois, WF Doolittle
BMC Evolutionary Biology 2005, 5:33 (24May2005)
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Research article
The complexity of selection at the major primate  -defensin locus
Colin AM Semple, Alison Maxwell, Philippe Gautier, Fiona M Kilanowski, Hayden Eastwood, Perdita E Barran, Julia R Dorin
BMC Evolutionary Biology 2005, 5:32 (18May2005)
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Research article
The integrins of the urochordate Ciona intestinalis provide novel insights into the molecular evolution of the vertebrate integrin family
Richard Ewan, Julie Huxley-Jones, A Paul Mould, Martin J Humphries, David L Robertson, Raymond P Boot-Handford
BMC Evolutionary Biology 2005, 5:31 (13May2005)
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Research article
Diaspora, a large family of Ty3-gypsy retrotransposons in Glycine max, is an envelope-less member of an endogenous plant retrovirus lineage
Sho T Yano, Bahman Panbehi, Arpita Das, Howard M Laten
BMC Evolutionary Biology 2005, 5:30 (5May2005)
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Research article
Mitochondrial haplotype diversity in the tortoise species Testudo graeca from North Africa and the Middle East
Antoinette C van der Kuyl, Donato LP Ballasina, Fokla Zorgdrager
BMC Evolutionary Biology 2005, 5:29 (18April2005)
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Research article
Subfunctionalization of duplicated genes as a transition state to neofunctionalization
Shruti Rastogi, David A Liberles
BMC Evolutionary Biology 2005, 5:28 (14April2005)
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Software
Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
Dave MacLeod, Robert L Charlebois, Ford Doolittle, Eric Bapteste
BMC Evolutionary Biology 2005, 5:27 (8April2005)
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Research article
Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages
Revathi Rajkumar, Jheelam Banerjee, Hima Bindu Gunturi, R Trivedi, VK Kashyap
BMC Evolutionary Biology 2005, 5:26 (2April2005)
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Research article
Shooting darts: co-evolution and counter-adaptation in hermaphroditic snails
Joris M Koene, Hinrich Schulenburg
BMC Evolutionary Biology 2005, 5:25 (30March2005)
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Research article
Evolutionary cores of domain co-occurrence networks
Stefan Wuchty, Eivind Almaas
BMC Evolutionary Biology 2005, 5:24 (23March2005)
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Research article
Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks
Ino Agrafioti, Jonathan Swire, James Abbott, Derek Huntley, Sarah Butcher, Michael PH Stumpf
BMC Evolutionary Biology 2005, 5:23 (18March2005)
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Research article
Phylogenomic approaches to common problems encountered in the analysis of low copy repeats: The sulfotransferase 1A gene family example
Michael E Bradley, Steven A Benner
BMC Evolutionary Biology 2005, 5:22 (7March2005)
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Research article
Using equilibrium frequencies in models of sequence evolution
Bjarne Knudsen, Michael M Miyamoto
BMC Evolutionary Biology 2005, 5:21 (2March2005)
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Research article
The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements
Claudia S Copeland, Victoria H Mann, Maria E Morales, Bernd H Kalinna, Paul J Brindley
BMC Evolutionary Biology 2005, 5:20 (23February2005)
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Research article
Consequences of the historical demography on the global population structure of two highly migratory cosmopolitan marine fishes: the yellowfin tuna (Thunnus albacares) and the skipjack tuna (Katsuwonus pelamis)
Bert Ely, Jordi Vi as, Jaime R Alvarado Bremer, Donna Black, Luciano Lucas, Kelly Covello, Alexis V Labrie, Eric Thelen
BMC Evolutionary Biology 2005, 5:19 (22February2005)
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Research article
Analysis of the human Alu Ye lineage
Abdel-Halim Salem, David A Ray, Dale J Hedges, Jerzy Jurka, Mark A Batzer
BMC Evolutionary Biology 2005, 5:18 (22February2005)
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Research article
Out of Tanganyika: Genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes
Walter Salzburger, Tanja Mack, Erik Verheyen, Axel Meyer
BMC Evolutionary Biology 2005, 5:17 (21February2005)
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Research article
Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function
Nelson D Young, Claude W dePamphilis
BMC Evolutionary Biology 2005, 5:16 (15February2005)
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Research article
The architecture of mammalian ribosomal protein promoters
Robert P Perry
BMC Evolutionary Biology 2005, 5:15 (13February2005)
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Research article
Evolution of the relaxin-like peptide family
Tracey N Wilkinson, Terence P Speed, Geoffrey W Tregear, Ross AD Bathgate
BMC Evolutionary Biology 2005, 5:14 (12February2005)
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Research article
The evolution of the Sin1 gene product, a little known protein implicated in stress responses and type I interferon signaling in vertebrates
Shu-Zong Wang, R Michael Roberts
BMC Evolutionary Biology 2005, 5:13 (7February2005)
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Research article
DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size
Austin L Hughes, Helen Piontkivska
BMC Evolutionary Biology 2005, 5:12 (4February2005)
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Research article
Functional evolution of ADAMTS genes: Evidence from analyses of phylogeny and gene organization
Ainsley C Nicholson, Shehre-Banoo Malik, John M Logsdon Jr, Erwin G Van Meir
BMC Evolutionary Biology 2005, 5:11 (4February2005)
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Research article
Structural similarity of loops in protein families: toward the understanding of protein evolution
Anna R Panchenko, Thomas Madej
BMC Evolutionary Biology 2005, 5:10 (3February2005)
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Research article
Phenotypic error threshold; additivity and epistasis in RNA evolution
Nobuto Takeuchi, Petrus H Poorthuis, Paulien Hogeweg
BMC Evolutionary Biology 2005, 5:9 (3February2005)
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Research article
Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation
Jessica C Mar, Timothy J Harlow, Mark A Ragan
BMC Evolutionary Biology 2005, 5:8 (28January2005)
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Research article
Genetics and geometry of canalization and developmental stability in Drosophila subobscura
Mauro Santos, Pedro Fernndez Iriarte, Walkiria Cspedes
BMC Evolutionary Biology 2005, 5:7 (22January2005)
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Methodology article
Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo
Rainer Opgen-Rhein, Ludwig Fahrmeir, Korbinian Strimmer
BMC Evolutionary Biology 2005, 5:6 (21January2005)
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Research article
Validating viral quasispecies with digital organisms: a re-examination of the critical mutation rate
Iaki Comas, Andrs Moya, Fernando Gonzlez-Candelas
BMC Evolutionary Biology 2005, 5:5 (15January2005)
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Research article
Climate change and recent genetic flux in populations of Drosophila robusta
Max Levitan, William J Etges
BMC Evolutionary Biology 2005, 5:4 (6January2005)
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Research article
The genetics of ray pattern variation in Caenorhabditis briggsae
Scott Everet Baird, Cynthia R Davidson, Justin C Bohrer
BMC Evolutionary Biology 2005, 5:3 (5January2005)
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Methodology article
Rooting a phylogenetic tree with nonreversible substitution models
Von Bing Yap, Terry Speed
BMC Evolutionary Biology 2005, 5:2 (4January2005)
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Research article
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants
Yuanji Zhang, Liangjiang Wang
BMC Evolutionary Biology 2005, 5:1 (3January2005)
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