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Self-consistent field theory for the interactions between keratin intermediate filaments
Anna Akinshina, Etienne Jambon-Puillet, Patrick B Warren, Massimo G Noro BMC Biophysics 2013, 6:12 (5 September 2013)
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Time-resolved force distribution analysis
Bogdan I Costescu, Frauke Gräter BMC Biophysics 2013, 6:5 (1 May 2013)
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Editor’s summary
Time-resolved force distribution analysis is a new method to monitor the fluctuations of internal forces in complex macromolecular structures, and is an alternative approach to coordinate-based methods for analyzing structural transitions. |
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Stochastic dynamics of virus capsid formation: direct versus hierarchical self-assembly
Johanna E Baschek, Heinrich C R Klein, Ulrich S Schwarz BMC Biophysics 2012, 5:22 (17 December 2012)
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Editor’s summary
Computational modeling of the way that viruses are able to self-assemble their protein capsid coats suggests that for complex viruses with more stable bonds, a piecemeal hierarchical assembly process is most likely. |
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Intracellular chemical gradients: morphing principle in bacteria
Robert G Endres BMC Biophysics 2012, 5:18 (7 September 2012)
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Editor’s summary
Robert Endres discusses a new study in BMC Biophysics that supports the emerging view that intracellular chemical gradients can exist in bacterial cells, and how these may limit in vitro analyses.
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Clustering of HIV-1 Subtypes Based on gp120 V3 Loop electrostatic properties
Aliana López de Victoria, Chris A Kieslich, Apostolos K Rizos, Elias Krambovitis, Dimitrios Morikis BMC Biophysics 2012, 5:3 (7 February 2012)
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Editor’s summary
The spatial distributions of electrostatic potentials and charges in the V3 loop of HIV-1 protein gp120 may be responsible for both long- and short-range interactions with co-receptors, ultimately affecting viral entry into cells
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Using default constraints of the spindle assembly checkpoint to estimate the associated chemical rates
Khanh Dao Duc, David Holcman BMC Biophysics 2012, 5:1 (19 January 2012)
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Brownian dynamics simulation of analytical ultracentrifugation experiments
AI Díez, A Ortega, J Garcia de la Tore BMC Biophysics 2011, 4:6 (2 March 2011)
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Editor’s summary
Using Brownian dynamics to simulate the trajectories of the particles could lead to improved and efficient predictions of time-dependent concentration profiles during analytical ultracentrifugation experiments.
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A solvable model for the diffusion and reaction of neurotransmitters in a synaptic junction
Jorge L Barreda, Huan-Xiang Zhou BMC Biophysics 2011, 4:5 (2 March 2011)
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Editor’s summary
An analytical solution to modeling the diffusion and reaction of acetylcholine in a neuromuscular junction and the binding of Ca2+ in a dyadic cleft provides a unique benchmark for testing numerical modeling methods.
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