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BMC Featured articles

Copyright to Dr. Ellen K. Rudolph (2003)
BMC Biology 2008, 6:34
The beta-globin gene clusters in platypus, mammals and birds are flanked by the same genes, indicating that this arrangement of genes originated before the divergence of birds and mammals.
Source: Wikipedia
BMC Biology 2008, 6:30
Novel expressed sequence tags (ESTs) from C. elegans that map to previously unknown genes, splice variants and non-coding RNAs have been uncovered by transcriptome profiling of the nematode's first larval stage using next generation pyrosequencing technology.
Credit: Wikipedia, James K. Lindsey
BMC Biology 2008, 6:25
The toxic effects of chemical contaminants like copper on a key indicator organism, the earthworm, can be monitored by combining metabolomics and transcriptomics, a systems ecotoxicology approach that provides detailed molecular information about adaptation to soil pollutants.


 BMC  Latest Genomics articles from BMC Biology
The authors assigned these articles to Genomics as the primary area of interest

Research article
The Caenorhabditis chemoreceptor gene families
James H Thomas, Hugh M Robertson
BMC Biology 2008, 6:42 (6October2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals
Vidushi S Patel, Steven JB Cooper, Janine E Deakin, Bob Fulton, Tina Graves, Wesley C Warren, Richard K Wilson, Jennifer AM Graves
BMC Biology 2008, 6:34 (25July2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags
Heesun Shin, Martin Hirst, Matthew N Bainbridge, Vincent Magrini, Elaine Mardis, Donald G Moerman, Marco A Marra, David L Baillie, Steven JM Jones
BMC Biology 2008, 6:30 (8July2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus
Jacob G Bundy, Jasmin K Sidhu, Faisal Rana, David J Spurgeon, Claus Svendsen, Jodie F Wren, Stephen R Strzenbaum, A John Morgan, Peter Kille
BMC Biology 2008, 6:25 (3June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Effects of aging and calorie restriction on the global gene expression profiles of mouse testis and ovary
Alexei A Sharov, Geppino Falco, Yulan Piao, Suresh Poosala, Kevin G Becker, Alan B Zonderman, Dan L Longo, David Schlessinger, Minoru SH Ko
BMC Biology 2008, 6:24 (3June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Double-stranded RNA-activated protein kinase PKR of fishes and amphibians: Varying the number of double-stranded RNA binding domains and lineage-specific duplications
Stefan Rothenburg, Nikolaus Deigendesch, Madhusudan Dey, Thomas E Dever, Loubna Tazi
BMC Biology 2008, 6:12 (3March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Classification and nomenclature of all human homeobox genes
Peter WH Holland, H Anne F Booth, Elspeth A Bruford
BMC Biology 2007, 5:47 (26October2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group
Thomas Walker, Lisa Klasson, Mohammed Sebaihia, Mandy J Sanders, Nicholas R Thomson, Julian Parkhill, Steven P Sinkins
BMC Biology 2007, 5:39 (20September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
A conserved gene family encodes transmembrane proteins with fibronectin, immunoglobulin and leucine-rich repeat domains (FIGLER)
Delicia L Munfus, Christopher L Haga, Peter D Burrows, Max D Cooper
BMC Biology 2007, 5:36 (13September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes
Celine A Hayden, Richard A Jorgensen
BMC Biology 2007, 5:32 (30July2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae
Hisayoshi Nozaki, Hiroyoshi Takano, Osami Misumi, Kimihiro Terasawa, Motomichi Matsuzaki, Shinichiro Maruyama, Keiji Nishida, Fumi Yagisawa, Yamato Yoshida, Takayuki Fujiwara, Susumu Takio, Katsunori Tamura, Sung Jin Chung, Soichi Nakamura, Haruko Kuroiwa, Kan Tanaka, Naoki Sato, Tsuneyoshi Kuroiwa
BMC Biology 2007, 5:28 (10July2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions
Stephan Steigele, Wolfgang Huber, Claudia Stocsits, Peter F Stadler, Kay Nieselt
BMC Biology 2007, 5:25 (18June2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Androgen responsive intronic non-coding RNAs
Rodrigo Louro, Helder I Nakaya, Paulo P Amaral, Fernanda Festa, Mari C Sogayar, Aline M da Silva, Sergio Verjovski-Almeida, Eduardo M Reis
BMC Biology 2007, 5:4 (30January2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic
Daniel H Haft, Ian T Paulsen, Naomi Ward, Jeremy D Selengut
BMC Biology 2006, 4:29 (24August2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
The transcriptome of Toxoplasma gondii
Jay R Radke, Michael S Behnke, Aaron J Mackey, Josh B Radke, David S Roos, Michael W White
BMC Biology 2005, 3:26 (2December2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications
The Rice Chromosomes 11 and 12 Sequencing Consortia*
BMC Biology 2005, 3:20 (27September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Modulation of extracellular matrix genes reflects the magnitude of physiological adaptation to aerobic exercise training in humans
James A Timmons, Eva Jansson, Helene Fischer, Thomas Gustafsson, Paul L Greenhaff, John Ridden, Jonathan Rachman, Carl Johan Sundberg
BMC Biology 2005, 3:19 (2September2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]

Research article
Alternative pre-mRNA processing regulates cell-type specific expression of the IL4l1 and NUP62 genes
Stefan Wiemann, Anja Kolb-Kokocinski, Annemarie Poustka
BMC Biology 2005, 3:16 (19July2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context
Jian Song, Carol A Bonner, Murray Wolinsky, Roy A Jensen
BMC Biology 2005, 3:13 (12May2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release
Brian J Haas, Jennifer R Wortman, Catherine M Ronning, Linda I Hannick, Roger K Smith Jr, Rama Maiti, Agnes P Chan, Chunhui Yu, Maryam Farzad, Dongying Wu, Owen White, Christopher D Town
BMC Biology 2005, 3:7 (22March2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]




 BMC  Other articles related to Genomics from BMC Biology and BMC Medicine
The authors assigned these articles to Genomics as a secondary area of interest

Research article
miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells
Joachim Silber, Daniel A Lim, Claudia Petritsch, Anders I Persson, Alika K Maunakea, Mamie Yu, Scott R Vandenberg, David G Ginzinger, C David James, Joseph F Costello, Gabriele Bergers, William A Weiss, Arturo Alvarez-Buylla, J Graeme Hodgson
BMC Medicine 2008, 6:14 (24June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Flying lemurs The 'flying tree shrews'? Molecular cytogenetic evidence for a Scandentia-Dermoptera sister clade
Wenhui Nie, Beiyuan Fu, Patricia CM O'Brien, Jinhuan Wang, Weiting Su, Alongkoad Tanomtong, Vitaly Volobouev, Malcolm A Ferguson-Smith, Fengtang Yang
BMC Biology 2008, 6:18 (1May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution
Lex Flagel, Joshua Udall, Dan Nettleton, Jonathan Wendel
BMC Biology 2008, 6:16 (16April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Gene expression profiling of cuticular proteins across the moult cycle of the crab Portunus pelagicus
Anna V Kuballa, David J Merritt, Abigail Elizur
BMC Biology 2007, 5:45 (10October2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes
Hans Ellegren, Lina Hultin-Rosenberg, Bjrn Brunstrm, Lennart Dencker, Kim Kultima, Birger Scholz
BMC Biology 2007, 5:40 (20September2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis
Uffe Hellsten, Mustafa K Khokha, Timothy C Grammer, Richard M Harland, Paul Richardson, Daniel S Rokhsar
BMC Biology 2007, 5:31 (25July2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Gene expression and the evolution of phenotypic diversity in social wasps
Eric A Hoffman, Michael AD Goodisman
BMC Biology 2007, 5:23 (15May2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Sequence variation in human succinate dehydrogenase genes: evidence for long-term balancing selection on SDHA
Bora E Baysal, Elizabeth C Lawrence, Robert E Ferrell
BMC Biology 2007, 5:12 (21March2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment]

Research article
A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies
Claude Lemieux, Christian Otis, Monique Turmel
BMC Biology 2007, 5:2 (12January2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Methodology article
Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST
E Michael Gertz, Yi-Kuo Yu, Richa Agarwala, Alejandro A Schffer, Stephen F Altschul
BMC Biology 2006, 4:41 (7December2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
A rapidly evolving secretome builds and patterns a sea shell
Daniel J Jackson, Carmel McDougall, Kathryn Green, Fiona Simpson, Gert Wrheide, Bernard M Degnan
BMC Biology 2006, 4:40 (22November2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes
Timothy JD Goodwin, Margaret I Butler, Russell TM Poulter
BMC Biology 2006, 4:38 (27October2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences
Nadia D Singh, Peter F Arndt, Dmitri A Petrov
BMC Biology 2006, 4:37 (18October2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
Danny W Rice, Jeffrey D Palmer
BMC Biology 2006, 4:31 (6September2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Comparative genomics of the class 4 histone deacetylase family indicates a complex evolutionary history
Valrie Ledent, Michel Vervoort
BMC Biology 2006, 4:24 (2August2006)
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Research article
Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates
Dirk Steinke, Simone Hoegg, Henner Brinkmann, Axel Meyer
BMC Biology 2006, 4:16 (6June2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured
Audrey P de Koning, Patrick J Keeling
BMC Biology 2006, 4:12 (21April2006)
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Research article
IL-10, IL-6 and CD14 polymorphisms and sepsis outcome in ventilated very low birth weight infants
R John Baier, John Loggins, Krishna Yanamandra
BMC Medicine 2006, 4:10 (12April2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes
Jean-Franois Pombert, Claude Lemieux, Monique Turmel
BMC Biology 2006, 4:3 (3February2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome
Mikhail Lipatov, Kapa Lenkov, Dmitri A Petrov, Casey M Bergman
BMC Biology 2005, 3:24 (12November2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales
Monique Turmel, Christian Otis, Claude Lemieux
BMC Biology 2005, 3:22 (20October2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Heterologous expression of the filarial nematode alt gene products reveals their potential to inhibit immune function
Natalia Gomez-Escobar, Clare Bennett, Lidia Prieto-Lafuente, Toni Aebischer, Clare C Blackburn, Rick M Maizels
BMC Biology 2005, 3:8 (23March2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology]

Research article
The planetary biology of cytochrome P450 aromatases
Eric A Gaucher, Logan G Graddy, Tang Li, Rosalia CM Simmen, Frank A Simmen, David R Schreiber, David A Liberles, Christine M Janis, Steven A Benner
BMC Biology 2004, 2:19 (17August2004)
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Research article
Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy
Gary Xie, Carol A Bonner, Jian Song, Nemat O Keyhani, Roy A Jensen
BMC Biology 2004, 2:15 (23June2004)
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Research article
Structure of GlgS from Escherichia coli suggests a role in proteinprotein interactions
Guennadi Kozlov, Demetra Elias, Miroslaw Cygler, Kalle Gehring
BMC Biology 2004, 2:10 (25May2004)
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Research article
ACE2 gene expression is up-regulated in the human failing heart
Andrew B Goulter, Martin J Goddard, Jennifer C Allen, Kenneth L Clark
BMC Medicine 2004, 2:19 (19May2004)
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Research article
The colonization of land by animals: molecular phylogeny and divergence times among arthropods
Davide Pisani, Laura L Poling, Maureen Lyons-Weiler, S Blair Hedges
BMC Biology 2004, 2:1 (19January2004)
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