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BMC Biology 2008, 6 :34
The beta-globin gene clusters in platypus, mammals and birds are flanked by the same genes, indicating that this arrangement of genes originated before the divergence of birds and mammals.
BMC Biology 2008, 6 :30
Novel expressed sequence tags (ESTs) from C. elegans that map to previously unknown genes, splice variants and non-coding RNAs have been uncovered by transcriptome profiling of the nematode's first larval stage using next generation pyrosequencing technology.
BMC Biology 2008, 6 :25
The toxic effects of chemical contaminants like copper on a key indicator organism, the earthworm, can be monitored by combining metabolomics and transcriptomics, a systems ecotoxicology approach that provides detailed molecular information about adaptation to soil pollutants.
Latest Genomics articles from BMC Biology
The authors assigned these articles to Genomics as the primary area of interest
Research article
The Caenorhabditis chemoreceptor gene families James H Thomas, Hugh M Robertson BMC Biology 2008, 6 :42 (6 October 2008) [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Research article
Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals Vidushi S Patel, Steven JB Cooper, Janine E Deakin, Bob Fulton, Tina Graves, Wesley C Warren, Richard K Wilson, Jennifer AM Graves BMC Biology 2008, 6 :34 (25 July 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags Heesun Shin, Martin Hirst, Matthew N Bainbridge, Vincent Magrini, Elaine Mardis, Donald G Moerman, Marco A Marra, David L Baillie, Steven JM Jones BMC Biology 2008, 6 :30 (8 July 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus Jacob G Bundy, Jasmin K Sidhu, Faisal Rana, David J Spurgeon, Claus Svendsen, Jodie F Wren, Stephen R St rzenbaum, A John Morgan, Peter Kille BMC Biology 2008, 6 :25 (3 June 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Effects of aging and calorie restriction on the global gene expression profiles of mouse testis and ovary Alexei A Sharov, Geppino Falco, Yulan Piao, Suresh Poosala, Kevin G Becker, Alan B Zonderman, Dan L Longo, David Schlessinger, Minoru SH Ko BMC Biology 2008, 6 :24 (3 June 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Double-stranded RNA-activated protein kinase PKR of fishes and amphibians: Varying the number of double-stranded RNA binding domains and lineage-specific duplications Stefan Rothenburg, Nikolaus Deigendesch, Madhusudan Dey, Thomas E Dever, Loubna Tazi BMC Biology 2008, 6 :12 (3 March 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Classification and nomenclature of all human homeobox genes Peter WH Holland, H Anne F Booth, Elspeth A Bruford BMC Biology 2007, 5 :47 (26 October 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Ankyrin repeat domain-encoding genes in the w Pip strain of Wolbachia from the Culex pipiens group Thomas Walker, Lisa Klasson, Mohammed Sebaihia, Mandy J Sanders, Nicholas R Thomson, Julian Parkhill, Steven P Sinkins BMC Biology 2007, 5 :39 (20 September 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A conserved gene family encodes transmembrane proteins with fibronectin, immunoglobulin and leucine-rich repeat domains (FIGLER) Delicia L Munfus, Christopher L Haga, Peter D Burrows, Max D Cooper BMC Biology 2007, 5 :36 (13 September 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes Celine A Hayden, Richard A Jorgensen BMC Biology 2007, 5 :32 (30 July 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae Hisayoshi Nozaki, Hiroyoshi Takano, Osami Misumi, Kimihiro Terasawa, Motomichi Matsuzaki, Shinichiro Maruyama, Keiji Nishida, Fumi Yagisawa, Yamato Yoshida, Takayuki Fujiwara, Susumu Takio, Katsunori Tamura, Sung Jin Chung, Soichi Nakamura, Haruko Kuroiwa, Kan Tanaka, Naoki Sato, Tsuneyoshi Kuroiwa BMC Biology 2007, 5 :28 (10 July 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions Stephan Steigele, Wolfgang Huber, Claudia Stocsits, Peter F Stadler, Kay Nieselt BMC Biology 2007, 5 :25 (18 June 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Androgen responsive intronic non-coding RNAs Rodrigo Louro, Helder I Nakaya, Paulo P Amaral, Fernanda Festa, Mari C Sogayar, Aline M da Silva, Sergio Verjovski-Almeida, Eduardo M Reis BMC Biology 2007, 5 :4 (30 January 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic Daniel H Haft, Ian T Paulsen, Naomi Ward, Jeremy D Selengut BMC Biology 2006, 4 :29 (24 August 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
The transcriptome of Toxoplasma gondii Jay R Radke, Michael S Behnke, Aaron J Mackey, Josh B Radke, David S Roos, Michael W White BMC Biology 2005, 3 :26 (2 December 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications The Rice Chromosomes 11 and 12 Sequencing Consortia* BMC Biology 2005, 3 :20 (27 September 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Modulation of extracellular matrix genes reflects the magnitude of physiological adaptation to aerobic exercise training in humans James A Timmons, Eva Jansson, Helene Fischer, Thomas Gustafsson, Paul L Greenhaff, John Ridden, Jonathan Rachman, Carl Johan Sundberg BMC Biology 2005, 3 :19 (2 September 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [F1000 Biology ] [Cited on BioMed Central ]
Research article
Alternative pre-mRNA processing regulates cell-type specific expression of the IL4l1 and NUP62 genes Stefan Wiemann, Anja Kolb-Kokocinski, Annemarie Poustka BMC Biology 2005, 3 :16 (19 July 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context Jian Song, Carol A Bonner, Murray Wolinsky, Roy A Jensen BMC Biology 2005, 3 :13 (12 May 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release Brian J Haas, Jennifer R Wortman, Catherine M Ronning, Linda I Hannick, Roger K Smith Jr, Rama Maiti, Agnes P Chan, Chunhui Yu, Maryam Farzad, Dongying Wu, Owen White, Christopher D Town BMC Biology 2005, 3 :7 (22 March 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Other articles related to Genomics from BMC Biology and BMC Medicine
The authors assigned these articles to Genomics as a secondary area of interest
Research article
miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells Joachim Silber, Daniel A Lim, Claudia Petritsch, Anders I Persson, Alika K Maunakea, Mamie Yu, Scott R Vandenberg, David G Ginzinger, C David James, Joseph F Costello, Gabriele Bergers, William A Weiss, Arturo Alvarez-Buylla, J Graeme Hodgson BMC Medicine 2008, 6 :14 (24 June 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Flying lemurs The 'flying tree shrews'? Molecular cytogenetic evidence for a Scandentia-Dermoptera sister clade Wenhui Nie, Beiyuan Fu, Patricia CM O'Brien, Jinhuan Wang, Weiting Su, Alongkoad Tanomtong, Vitaly Volobouev, Malcolm A Ferguson-Smith, Fengtang Yang BMC Biology 2008, 6 :18 (1 May 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution Lex Flagel, Joshua Udall, Dan Nettleton, Jonathan Wendel BMC Biology 2008, 6 :16 (16 April 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Gene expression profiling of cuticular proteins across the moult cycle of the crab Portunus pelagicus Anna V Kuballa, David J Merritt, Abigail Elizur BMC Biology 2007, 5 :45 (10 October 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes Hans Ellegren, Lina Hultin-Rosenberg, Bj rn Brunstr m, Lennart Dencker, Kim Kultima, Birger Scholz BMC Biology 2007, 5 :40 (20 September 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis Uffe Hellsten, Mustafa K Khokha, Timothy C Grammer, Richard M Harland, Paul Richardson, Daniel S Rokhsar BMC Biology 2007, 5 :31 (25 July 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Gene expression and the evolution of phenotypic diversity in social wasps Eric A Hoffman, Michael AD Goodisman BMC Biology 2007, 5 :23 (15 May 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Sequence variation in human succinate dehydrogenase genes: evidence for long-term balancing selection on SDHA Bora E Baysal, Elizabeth C Lawrence, Robert E Ferrell BMC Biology 2007, 5 :12 (21 March 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [1 comment ]
Research article
A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies Claude Lemieux, Christian Otis, Monique Turmel BMC Biology 2007, 5 :2 (12 January 2007) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Methodology article
Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST E Michael Gertz, Yi-Kuo Yu, Richa Agarwala, Alejandro A Sch ffer, Stephen F Altschul BMC Biology 2006, 4 :41 (7 December 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
A rapidly evolving secretome builds and patterns a sea shell Daniel J Jackson, Carmel McDougall, Kathryn Green, Fiona Simpson, Gert W rheide, Bernard M Degnan BMC Biology 2006, 4 :40 (22 November 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes Timothy JD Goodwin, Margaret I Butler, Russell TM Poulter BMC Biology 2006, 4 :38 (27 October 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences Nadia D Singh, Peter F Arndt, Dmitri A Petrov BMC Biology 2006, 4 :37 (18 October 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters Danny W Rice, Jeffrey D Palmer BMC Biology 2006, 4 :31 (6 September 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Comparative genomics of the class 4 histone deacetylase family indicates a complex evolutionary history Val rie Ledent, Michel Vervoort BMC Biology 2006, 4 :24 (2 August 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates Dirk Steinke, Simone Hoegg, Henner Brinkmann, Axel Meyer BMC Biology 2006, 4 :16 (6 June 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured Audrey P de Koning, Patrick J Keeling BMC Biology 2006, 4 :12 (21 April 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
IL-10, IL-6 and CD14 polymorphisms and sepsis outcome in ventilated very low birth weight infants R John Baier, John Loggins, Krishna Yanamandra BMC Medicine 2006, 4 :10 (12 April 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes Jean-Fran ois Pombert, Claude Lemieux, Monique Turmel BMC Biology 2006, 4 :3 (3 February 2006) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome Mikhail Lipatov, Kapa Lenkov, Dmitri A Petrov, Casey M Bergman BMC Biology 2005, 3 :24 (12 November 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales Monique Turmel, Christian Otis, Claude Lemieux BMC Biology 2005, 3 :22 (20 October 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Heterologous expression of the filarial nematode alt gene products reveals their potential to inhibit immune function Natalia Gomez-Escobar, Clare Bennett, Lidia Prieto-Lafuente, Toni Aebischer, Clare C Blackburn, Rick M Maizels BMC Biology 2005, 3 :8 (23 March 2005) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [F1000 Biology ]
Research article
The planetary biology of cytochrome P450 aromatases Eric A Gaucher, Logan G Graddy, Tang Li, Rosalia CM Simmen, Frank A Simmen, David R Schreiber, David A Liberles, Christine M Janis, Steven A Benner BMC Biology 2004, 2 :19 (17 August 2004) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [F1000 Biology ] [Cited on BioMed Central ]
Research article
Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy Gary Xie, Carol A Bonner, Jian Song, Nemat O Keyhani, Roy A Jensen BMC Biology 2004, 2 :15 (23 June 2004) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Structure of GlgS from Escherichia coli suggests a role in protein protein interactions Guennadi Kozlov, Demetra Elias, Miroslaw Cygler, Kalle Gehring BMC Biology 2004, 2 :10 (25 May 2004) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
ACE2 gene expression is up-regulated in the human failing heart Andrew B Goulter, Martin J Goddard, Jennifer C Allen, Kenneth L Clark BMC Medicine 2004, 2 :19 (19 May 2004) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
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The colonization of land by animals: molecular phylogeny and divergence times among arthropods Davide Pisani, Laura L Poling, Maureen Lyons-Weiler, S Blair Hedges BMC Biology 2004, 2 :1 (19 January 2004) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]