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1.

13226
Accesses

Research article   Open Access Highly Accessed

scribble mutants promote aPKC and JNK-dependent epithelial neoplasia independently of Crumbs

Gregory R Leong, Karen R Goulding, Nancy Amin, Helena E Richardson, Anthony M Brumby BMC Biology 2009, 7:62 (24 September 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Scribble, a cell polarity regulator in Drosophila, represses tumorigenesis by inhibiting atypical protein kinase C and Jun N-terminal kinase-dependent pathways, and this might be relevant for how human Scrib restrains oncogene-mediated transformation.

2.

3246
Accesses

Research article   Open Access Highly Accessed

Ancient origin of somatic and visceral neurons

Marc Nomaksteinsky, Stefan Kassabov, Zoubida Chettouh, Henri-Corto Stoeklé, Laure Bonnaud, Gilles Fortin, Eric R Kandel, Jean-François Brunet BMC Biology 2013, 11:53 (30 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The great American palaeontologist and anatomist Alfred Romer speculated that early in animal life, an emerging somatic nervous system, focused on the outside world, struggled to dominate the visceral nervous system that takes care of the internal systems that keep us alive. Jean-François Brunet and colleagues identify the molecular signatures that tell the evolutionary tale of this duality.

3.

2643
Accesses

Commentary   Open Access Highly Accessed

Somatic and visceral nervous systems - an ancient duality

Paola Bertucci, Detlev Arendt BMC Biology 2013, 11:54 (30 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The idea that vertebrates are composed of a ‘visceral’ and ‘somatic’ self, responding to internal and external stimuli, respectively, was first put forward in the 19th century. Now, molecular fingerprinting indicates a duality between the somatic and visceral nervous systems that appears to predate Bilataria.

4.

2172
Accesses

Question and Answer   Open Access

Q&A: Antibiotic resistance: what more do we know and what more can we do?

Gerard D Wright BMC Biology 2013, 11:51 (17 May 2013)

Full text | PDF | PubMed |  Editor’s summary

Antibiotic resistance is both an ancient phenomenon and a worsening medical problem. Gerard Wright explains why, and what should be done about it.

5.

2077
Accesses

Review   Open Access Highly Accessed

Molecular dynamics simulations and drug discovery

Jacob D Durrant, J Andrew McCammon BMC Biology 2011, 9:71 (28 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Modeling the movements of atoms within macromolecules can predict their conformational flexibility to inform drug discovery. Jacob Durrant and Andrew McCammon explain how this is done in molecular dynamics simulations, reviewing both the successes and current limitations of the approach.

6.

1895
Accesses

Review   Open Access Highly Accessed

LKB1 and AMPK and the cancer-metabolism link - ten years after

D Hardie, Dario R Alessi BMC Biology 2013, 11:36 (15 April 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Ten years ago Grahame Hardie published in Journal of Biology (now BMC Biology) the discovery that the upstream activating kinase he was seeking for the multifarious energy sensor AMPK was the tumor suppressor, LKB1, that Dario Alessi was working on in a neighboring lab. For BMC Biology’s tenth anniversary they review some of what they have discovered since.

7.

1788
Accesses

Comment   Open Access Highly Accessed

Domesticating the beast

Virginia Walbot BMC Biology 2013, 11:35 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

In 2009, Virginia Walbot commented ‘Are we training pit bulls to review our manuscripts?’ Revisiting the topic, she asks if we can tame our pit bull reviewers by involving students more in peer review and teaching them to see things from an authors’ perspective and the perspective of the journal that is responsible for making a decision on publication.

8.

1639
Accesses

Interview   Open Access Highly Accessed

An interview with Patrick O Brown on the origins and future of open access

Patrick O Brown BMC Biology 2013, 11:33 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

In an interview for the BMC Biology tenth anniversary collection, Patrick O Brown excavates his memory for the origins of open access publishing, and finds a vision of the future still to be fulfilled.

9.

1581
Accesses

Research article   Open Access

Spatial and temporal in vivo analysis of circulating and sessile immune cells in mosquitoes: hemocyte mitosis following infection

Jonas G King, Julián F Hillyer BMC Biology 2013, 11:55 (30 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Observations on the number, location, phagocytic activity and cell division of hemocytes in the body cavity of mosquitoes sheds new light on the biology of insect immune system cells.

10.

1374
Accesses

Research article   Open Access

Statistical support for the hypothesis of developmental constraint in marsupial skull evolution

C Verity Bennett, Anjali Goswami BMC Biology 2013, 11:52 (26 April 2013)

Abstract | Full text | PDF | PubMed

11.

1299
Accesses

Question and Answer   Open Access Highly Accessed

Q&A: What is the Golgi apparatus, and why are we asking?

Sean Munro BMC Biology 2011, 9:63 (30 September 2011)

Full text | PDF | PubMed | 2 comments |  Editor’s summary

Sean Munro explains in Q&A format why the Golgi apparatus remains a gently seething cauldron of controversy more than 120 years after its discovery.

12.

1248
Accesses

Research article   Open Access

On the origin of POU5F1

Stephen Frankenberg, Marilyn B Renfree BMC Biology 2013, 11:56 (9 May 2013)

Abstract | Provisional PDF | PubMed

13.

1182
Accesses

Anniversary Update   Open Access

The new micro-kingdoms of eukaryotes

Jan Pawlowski BMC Biology 2013, 11:40 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

14.

1175
Accesses

Opinion   Open Access

Of flies and men: insights on organismal metabolism from fruit flies

Akhila Rajan, Norbert Perrimon BMC Biology 2013, 11:38 (15 April 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

For many reasons metabolism is now a high-profile topic, and in an update to mark the tenth anniversary of BMC Biology, Norbert Perrimon and Akhila Rajan review the remarkable similarities that make Drosophila a model for mammalian metabolism, and some recent advances made possible by the advantages of this model organism.

15.

1162
Accesses

Review   Open Access Highly Accessed

Microarrays, deep sequencing and the true measure of the transcriptome

John H Malone, Brian Oliver BMC Biology 2011, 9:34 (31 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Global measures of gene expression can now be extracted either from microarrays or from RNA-seq, which do not always seem to give the same answer. Malone and Oliver review the advantages and limitations of each and conclude that, with some important exceptions, they tell the same story.

16.

1144
Accesses

Anniversary Update   Open Access

White-nose syndrome in bats: illuminating the darkness

Paul M Cryan, Carol Meteyer, Justin G Boyles, David S Blehert BMC Biology 2013, 11:47 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

17.

1076
Accesses

Opinion   Open Access

Thirty years on: HIV receptor gymnastics and the prevention of infection

Robin A Weiss BMC Biology 2013, 11:57 (21 May 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Robin Weiss, in an article to mark the 30th anniversary of the discovery of the human immunodeficiency virus (HIV), reviews the complex interactions of the virus with the specialized surface molecules by which it gains entry into cells, and how this has led to drugs that block it.

18.

1068
Accesses

Interview   Open Access

In pursuit of an HIV vaccine: an interview with Andrew McMichael

Andrew J McMichael BMC Biology 2013, 11:60 (21 May 2013)

Full text | PDF | PubMed |  Editor’s summary

Can the immune system be induced to protect itself against HIV infection? Andrew McMichael gives his perspective in an interview, explaining the challenges faced in making a vaccine  and why he remains optimistic about the potential of eliciting strong T cell responses for controlling the virus.

19.

1041
Accesses

Anniversary Update   Open Access

Seeing the Tree of Life behind the phylogenetic forest

Pere Puigbò, Yuri I Wolf, Eugene V Koonin BMC Biology 2013, 11:46 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

20.

996
Accesses

Commentary   Open Access Highly Accessed

Mitochondrial genomes as living ‘fossils’

Ian Small BMC Biology 2013, 11:30 (15 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Ian Small discusses why the "fossilised" mitochondrial genome of Liriodendron could have such a slow mutation rate, and what it might tell us about the evolution of RNA editing.

21.

980
Accesses

Forum   Open Access Highly Accessed

What determines cell size?

Wallace F Marshall, Kevin D Young, Matthew Swaffer, Elizabeth Wood, Paul Nurse, Akatsuki Kimura, Joseph Frankel, John Wallingford, Virginia Walbot, Xian Qu, Adrienne HK Roeder BMC Biology 2012, 10:101 (14 December 2012)

Abstract | Full text | PDF | PubMed | 2 comments |  Editor’s summary

In a Forum article in the Cell geometry series, ten experts in ten different systems explain why it matters what size a cell is, and offer ten different answers on how it is controlled – probably all of them right.

22.

974
Accesses

Research article   Open Access Highly Accessed

The “fossilized” mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

Aaron O Richardson, Danny W Rice, Gregory J Young, Andrew J Alverson, Jeffrey D Palmer BMC Biology 2013, 11:29 (15 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The mitochondrial genome of the tulip tree has a remarkably slow rate of nucleotide substitution, and could offer insight into the content and organisation of this genome in the ancestral flowering plant.

23.

918
Accesses

Anniversary Update   Open Access

Arthropods and inherited bacteria: from counting the symbionts to understanding how symbionts count

Olivier Duron, Gregory DD Hurst BMC Biology 2013, 11:45 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

24.

878
Accesses

Research article   Open Access Highly Accessed

Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces

Imke E Mulder, Bettina Schmidt, Christopher R Stokes, Marie Lewis, Mick Bailey, Rustam I Aminov, James I Prosser, Bhupinder P Gill, John R Pluske, Claus-Dieter Mayer, Corran C Musk, Denise Kelly BMC Biology 2009, 7:79 (20 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Pigs reared indoors or in isolation have a less healthy gut microbiota than outdoor-reared pigs, and signs of immune activation in gut tissues, reinforcing human data associating childhood hygiene with inflammatory bowel disease.

25.

871
Accesses

Research article   Open Access

Control of the olive fruit fly using genetics-enhanced sterile insect technique

Thomas Ant, Martha Koukidou, Polychronis Rempoulakis, Hong-Fei Gong, Aris Economopoulos, John Vontas, Luke Alphey BMC Biology 2012, 10:51 (19 June 2012)

Abstract | Full text | PDF | PubMed

26.

864
Accesses

Review   Open Access

Drugging Hedgehog: signaling the pathway to translation

Tom J Carney, Philip W Ingham BMC Biology 2013, 11:37 (15 April 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Ten years ago Jeff Porter and colleagues published a screen for small-molecule modulators of the Hedgehog signaling pathway in the Journal of Biology. For BMC Biology’s 10th anniversary, Tom Carney and Philip Ingham discuss the far-reaching clinical impact of some of the agonists and antagonists they discovered.

27.

840
Accesses

Methodology article   Open Access Highly Accessed

Advances in establishment and analysis of three-dimensional tumor spheroid-based functional assays for target validation and drug evaluation

Maria Vinci, Sharon Gowan, Frances Boxall, Lisa Patterson, Miriam Zimmermann, William Court, Cara Lomas, Marta Mendiola, David Hardisson, Suzanne A Eccles BMC Biology 2012, 10:29 (22 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A high throughput method to assay for the growth, invasiveness and angiogenic activity of tumor cells grown in 3-dimensions is validated by testing known cancer drugs, and offers a tool-kit for testing new ones.

28.

844
Accesses

Research article   Open Access Highly Accessed

Conditional embryonic lethality to improve the sterile insect technique in Ceratitis capitata (Diptera: Tephritidae)

Marc F Schetelig, Carlos Caceres, Antigone Zacharopoulou, Gerald Franz, Ernst A Wimmer BMC Biology 2009, 7:4 (27 January 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A novel transgenic lethality system in the male Mediterranean fruit fly Ceratitis capitata results in all progeny dying during embryogenesis, ensuring 100% effective pest control without the need for irradiation.

29.

775
Accesses

Research article   Open Access

Radial glial cells play a key role in echinoderm neural regeneration

Vladimir S Mashanov, Olga R Zueva, José E García-Arrarás BMC Biology 2013, 11:49 (18 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Repair of a cut radial nerve cord in a sea cucumber is mediated by radial glial cells that dedifferentiate, divide and give rise to new neurons.

30.

755
Accesses

Forum   Open Access Highly Accessed

What does the concept of the stem cell niche really mean today?

Arthur D Lander, Judith Kimble, Hans Clevers, Elaine Fuchs, Didier Montarras, Margaret Buckingham, Anne L Calof, Andreas Trumpp, Thordur Oskarsson BMC Biology 2012, 10:19 (9 March 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

How do current researchers view the stem cell niche? Eight experts from different fields provide their perspective, and ask how stem cells evolve in such an environment, launching a new Forum article type within the cross-journal collection on stem cells.

31.

750
Accesses

Question and Answer   Open Access Highly Accessed

Q&A: 'Toxic' effects of sugar: should we be afraid of fructose?

Luc Tappy BMC Biology 2012, 10:42 (21 May 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Before the colonial era of sugar plantations we consumed, on average, about 15-fold less fructose than we do today. Luc Tappy explains, in question and answer format, the special features of fructose metabolism and discusses the evidence that high fructose intake has contributed to the current epidemic of obesity and metabolic disease.

32.

742
Accesses

Research article   Open Access Highly Accessed

Haploinsufficiency and the sex chromosomes from yeasts to humans

Michaela de Clare, Pınar Pir, Stephen G Oliver BMC Biology 2011, 9:15 (28 February 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Haploinsufficient genes are highly conserved among eukaryotes, and have a special evolutionary relationship with the mating-type chromosomes of yeast and sex chromosomes of humans.

33.

721
Accesses

Research article   Open Access Highly Accessed

The first metazoa living in permanently anoxic conditions

Roberto Danovaro, Antonio Dell'Anno, Antonio Pusceddu, Cristina Gambi, Iben Heiner, Reinhardt Møbjerg Kristensen BMC Biology 2010, 8:30 (6 April 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 2 comments | F1000 Biology |  Editor’s summary

An expedition to a deep sea hypersaline anoxic basin in the Mediterranean has discovered the first multicellular animals that live and reproduce in the absence of oxygen.

34.

707
Accesses

Research article   Open Access Highly Accessed

Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae

Michaela de Clare, Stephen G Oliver BMC Biology 2013, 11:24 (25 March 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

An analysis of the effect of copy number variation on growth, apoptosis and the cell cycle for a selected subset of Saccharomyces cerevisiae genes suggests that using this model yeast to predict the effects of similar copy number variants in human cancers is a worthwhile approach.

35.

707
Accesses

Question and Answer   Open Access Highly Accessed

Q&A: Who needs a centrosome?

Mónica Bettencourt-Dias BMC Biology 2013, 11:28 (11 April 2013)

Full text | PDF | PubMed |  Editor’s summary

The centrosome is classically regarded as the microtubule-organizing center of the cell. But cells can divide without them, and exactly what they do is largely mysterious. In a Q&A article in a series on cell geometry, Monica Bettencourt-Dias asks what we do know and what we don’t, about normal centrosomes and the abnormalities underlying disease.

36.

670
Accesses

Research article   Open Access

A functional genomics screen for microRNA regulators of NF-kappaB signaling

Anthony O Olarerin-George, Lauren Anton, Yih-Chii Hwang, Michal A Elovitz, John B Hogenesch BMC Biology 2013, 11:19 (28 February 2013)

Abstract | Full text | PDF | PubMed

37.

639
Accesses

Research article   Open Access

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

Emilie Chancerel, Jean-Baptiste Lamy, Isabelle Lesur, Céline Noirot, Christophe Klopp, François Ehrenmann, Christophe Boury, Grégoire Le Provost, Philippe Label, Céline Lalanne, Valérie Léger, Franck Salin, Jean-Marc Gion, Christophe Plomion BMC Biology 2013, 11:50 (18 April 2013)

Abstract | Full text | PDF | PubMed

38.

624
Accesses

Commentary   Open Access Highly Accessed

Following autophagy step by step

Tom Hansen, Terje Johansen BMC Biology 2011, 9:39 (2 June 2011)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Autophagy, whereby cells digest their own contents and can remove damaging aggregates and pathogens, is a current focus of interest for therapeutic intervention. Hansen and Johansen explain in a Commentary on a paper from Brady and colleagues a new advance in screening for modulators that allows resolution of distinct steps in the pathway.

39.

626
Accesses

Research article   Open Access

Functional divergence of the brain-size regulating gene MCPH1 during primate evolution and the origin of humans

Lei Shi, Ming Li, Qiang Lin, Xuebin Qi, Bing Su BMC Biology 2013, 11:62 (22 May 2013)

Abstract | Provisional PDF

40.

619
Accesses

Research article   Open Access Highly Accessed

Molecular basis for prey relocation in viperid snakes

Anthony J Saviola, David Chiszar, Chardelle Busch, Stephen P Mackessy BMC Biology 2013, 11:20 (1 March 2013)

Abstract | Full text | PDF | PubMed | F1000 Biology |  Editor’s summary

Viperid snakes bite their prey and then let them go to avoid retaliation. By measuring snake behavior and analysing venom chemistry, Stephen Mackessy and colleagues provide an answer to how they find them again.

41.

617
Accesses

Research article   Open Access Highly Accessed

Evidence that a West-East admixed population lived in the Tarim Basin as early as the early Bronze Age

Chunxiang Li, Hongjie Li, Yinqiu Cui, Chengzhi Xie, Dawei Cai, Wenying Li, Victor H Mair, Zhi Xu, Quanchao Zhang, Idelisi Abuduresule, Li Jin, Hong Zhu, Hui Zhou BMC Biology 2010, 8:15 (17 February 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Genetic analysis of human remains from the Tarim Basin in China reveals that the Xiaohe people comprised an admixture of populations originating from both the East and the West dating from the early Bronze Age.

42.

610
Accesses

Research article   Open Access Highly Accessed

Extensive population genetic structure in the giraffe

David M Brown, Rick A Brenneman, Klaus-Peter Koepfli, John P Pollinger, Borja Milá, Nicholas J Georgiadis, Edward E Louis, Gregory F Grether, David K Jacobs, Robert K Wayne BMC Biology 2007, 5:57 (21 December 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Giraffes can travel widely but have recently been found to comprise eleven genetically distinct populations with little interbreeding, a finding which is unprecedented among large African mammals with significant implications for giraffe conservation management.

43.

607
Accesses

Commentary   Open Access Highly Accessed

Biological functions of natural antisense transcripts

Andreas Werner BMC Biology 2013, 11:31 (12 April 2013)

Abstract | Full text | PDF | PubMed

44.

584
Accesses

Comment   Open Access Highly Accessed

Open questions: Epigenetics and the role of heterochromatin in development

Susan M Gasser BMC Biology 2013, 11:21 (4 March 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

As part of BMC Biology’s 10th anniversary collection, Susan Gasser’s open questions link heterochromatin-mediated silencing, nuclear localisation and the true nature of epigenetic control.

45.

574
Accesses

Question and Answer   Open Access Highly Accessed

Q&A: ChIP-seq technologies and the study of gene regulation

Edison T Liu, Sebastian Pott, Mikael Huss BMC Biology 2010, 8:56 (14 May 2010)

Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Edison Liu and colleagues explain in Q&A format how ChIP-seq technology allows investigation of transcriptional regulation on a genomic scale, and what is next.

46.

571
Accesses

Anniversary Update   Open Access

Neurosensory transmission without a synapse: new perspectives on taste signaling

Sue C Kinnamon BMC Biology 2013, 11:42 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

47.

572
Accesses

Research article   Open Access Highly Accessed

The songbird syrinx morphome: a three-dimensional, high-resolution, interactive morphological map of the zebra finch vocal organ

Daniel N Düring, Alexander Ziegler, Christopher K Thompson, Andreas Ziegler, Cornelius Faber, Johannes Müller, Constance Scharff, Coen PH Elemans BMC Biology 2013, 11:1 (8 January 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The three-dimensional anatomy of the zebra finch vocal organ is described in unprecedented detail, providing new insights into the biomechanics of song production in a species widely used as an experimental model for vocal learning.

48.

572
Accesses

Research article   Open Access Highly Accessed

Pair of lice lost or parasites regained: the evolutionary history of anthropoid primate lice

David L Reed, Jessica E Light, Julie M Allen, Jeremy J Kirchman BMC Biology 2007, 5:7 (7 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The coevolution of parasitic lice on primate hosts involved cospeciation and host switching, resulting in humans sharing body lice with gorillas and head lice being shared between humans and chimpanzees.

49.

551
Accesses

Anniversary Update   Open Access

Tropical rain forest evolution: palms as a model group

Thomas LP Couvreur, William J Baker BMC Biology 2013, 11:48 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

50.

537
Accesses

Question and Answer   Open Access Highly Accessed

Q&A: What is a pathogen? A question that begs the point

Liise-anne Pirofski, Arturo Casadevall BMC Biology 2012, 10:6 (31 January 2012)

Abstract | Full text | PDF | PubMed | 1 comment |  Editor’s summary

Arturo Casadevall and Liise-anne Pirofski explain in Q&A format the emergent properties of microbial pathogenesis that make the question impossible to answer, and the emergence of new pathogens almost impossible to predict.

51.

529
Accesses

Research article   Open Access Highly Accessed

A gene expression atlas of the domestic pig

Tom C Freeman, Alasdair Ivens, J Kenneth Baillie, Dario Beraldi, Mark W Barnett, David Dorward, Alison Downing, Lynsey Fairbairn, Ronan Kapetanovic, Sobia Raza, Andru Tomoiu, Ramiro Alberio, Chunlei Wu, Andrew I Su, Kim M Summers, Christopher K Tuggle, Alan L Archibald, David A Hume BMC Biology 2012, 10:90 (15 November 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A genome-wide transcriptional analysis of over 60 tissues of the domestic pig identifies a network of transcription factors functioning in gastrointestinal development, as part of a collection of BioMed Central papers accompanying the publication of the pig genome in Nature.

52.

511
Accesses

Research article   Open Access

MST1, a key player, in enhancing fast skeletal muscle atrophy

Bin Wei, Wen Dui, Dong Liu, Yan Xing, Zengqiang Yuan, Guangju Ji BMC Biology 2013, 11:12 (1 February 2013)

Abstract | Full text | PDF | PubMed

53.

510
Accesses

Research article   Open Access

Thyroid hormone actions are temperature-specific and regulate thermal acclimation in zebrafish (Danio rerio)

Alexander G Little, Tatsuya Kunisue, Kurunthachalam Kannan, Frank Seebacher BMC Biology 2013, 11:26 (26 March 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Thyroid hormone plays an important part in adaptation to changing ambient temperature conditions in mammals, but surprisingly, its role in such adaptation in ectotherms is not known. Alexander Little and colleagues report investigations on zebrafish that suggest it is important for cold-blooded vertebrate adaptation too.

54.

509
Accesses

Methodology article   Open Access Highly Accessed

Use of the viral 2A peptide for bicistronic expression in transgenic mice

Georgios Trichas, Jo Begbie, Shankar Srinivas BMC Biology 2008, 6:40 (15 September 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Germline transmission of a bicistronic vector using the 2A peptide to allow co-translational cleavage is stable in mice and shows no developmental side-effects, giving a superior alternative to the internal ribosomal entry site for expressing multiple transgenes.

55.

482
Accesses

Question and Answer   Open Access Highly Accessed

Q&A: Antibiotic resistance: where does it come from and what can we do about it?

Gerard D Wright BMC Biology 2010, 8:123 (20 September 2010)

Full text | PDF | PubMed | 1 comment |  Editor’s summary

As long as we continue to use antibiotics the development of resistance is inevitable. Gerard Wright explains why it is an increasing problem, and what can be done about it.

56.

476
Accesses

Editorial   Open Access Highly Accessed

Q&A: Re-review opt-out and painless publishing

Miranda Robertson BMC Biology 2013, 11:18 (28 February 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

BMC Biology operates on the principle that the function of a journal is to facilitate publication of sound research results. Miranda Robertson reviews in Q&A format the journal’s re-review opt-out policy and how it has worked over the four years of its operation.

57.

457
Accesses

Research article   Open Access Highly Accessed

Leaf-cutting ant fungi produce cell wall degrading pectinase complexes reminiscent of phytopathogenic fungi

Morten Schiøtt, Adelina Rogowska-Wrzesinska, Peter Roepstorff, Jacobus J Boomsma BMC Biology 2010, 8:156 (31 December 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Leaf-cutting ants mix chewed leaves with their fecal droplets to cultivate fungal gardens. This mutualistic symbiosis involves fungal pectinases that emerge undigested from the ant’s gut, ready for active service in decomposing new leaf fragments.

58.

447
Accesses

Comment   Open Access Highly Accessed

Open questions: What is there left for cell biologists to do?

Sean Munro BMC Biology 2013, 11:16 (27 February 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

In a contribution to the 10th anniversary series on open questions in biology, Sean Munro asks provocatively what there is left for cell biologists to do, and with great elan and a touch of waspish humor produces five unanswered questions on issues from the special properties of non-dividing cells to the architecture of the brain.

59.

443
Accesses

Research article   Open Access Highly Accessed

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

Christine E Schnitzler, Kevin Pang, Meghan L Powers, Adam M Reitzel, Joseph F Ryan, David Simmons, Takashi Tada, Morgan Park, Jyoti Gupta, Shelise Y Brooks, Robert W Blakesley, Shozo Yokoyama, Steven HD Haddock, Mark Q Martindale, Andreas D Baxevanis BMC Biology 2012, 10:107 (21 December 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The comb jelly Mnemiopsis leidyi has at least ten distinct genes encoding enzymes that catalyse bioluminescence. Their evolutionary origin traces back to the earliest animals, and in Mnemiopsis they are co-expressed with light-absorbing opsin in light-detecting cells. 

60.

439
Accesses

Research article   Open Access Highly Accessed

Multigene phylogeny of the Mustelidae: Resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation

Klaus-Peter Koepfli, Kerry A Deere, Graham J Slater, Colleen Begg, Keith Begg, Lon Grassman, Mauro Lucherini, Geraldine Veron, Robert K Wayne BMC Biology 2008, 6:10 (14 February 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A multigene phylogeny of the weasel family, the most species-rich family of the Carnivora, provides evidence for two bursts of diversification during the Neogene period that coincide with major environmental changes and speciation events in other vertebrates.

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Research article   Open Access Highly Accessed

Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)

Ylenia Chiari, Vincent Cahais, Nicolas Galtier, Frédéric Delsuc BMC Biology 2012, 10:65 (27 July 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Turtles have traditionally been hard to place taxonomically because of their unique morphology, and recent research based on microRNA has stirred the pot once again. Contrary to that work, phylogenomic analysis of a large new sequence data set adds strong support to the previous conclusion that turtles' closest evolutionary relatives are birds and crocodiles.

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Methodology article   Open Access Highly Accessed

Rapid production of antigen-specific monoclonal antibodies from a variety of animals

Nobuyuki Kurosawa, Megumi Yoshioka, Rika Fujimoto, Fuminori Yamagishi, Masaharu Isobe BMC Biology 2012, 10:80 (28 September 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Using a fluorescent dye to label the greatly expanded endoplasmic reticulum characteristic of antibody-secreting cells, Kurosawa and colleagues demonstrate how monoclonal antibodies can be produced from a variety of immunized animals in just one week.

63.

407
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Research article   Open Access

The buccohypophyseal canal is an ancestral vertebrate trait maintained by modulation in sonic hedgehog signaling

Roman H Khonsari, Maisa Seppala, Alan Pradel, Hugo Dutel, Gaël Clément, Oleg Lebedev, Sarah Ghafoor, Michaela Rothova, Abigael Tucker, John G Maisey, Chen-Ming Fan, Maiko Kawasaki, Atsushi Ohazama, Paul Tafforeau, Brunella Franco, Jill Helms, Courtney J Haycraft, Albert David, Philippe Janvier, Martyn T Cobourne, Paul T Sharpe BMC Biology 2013, 11:27 (28 March 2013)

Abstract | Full text | PDF | PubMed

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Opinion   Open Access Highly Accessed

Wing pathology of white-nose syndrome in bats suggests life-threatening disruption of physiology

Paul M Cryan, Carol Meteyer, Justin G Boyles, David S Blehert BMC Biology 2010, 8:135 (11 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

WNS, a disease caused by the invasive skin fungus Geomyces destructans, is killing hibernating bats in North America. Cryan, Meteyer, and coauthors propose that disruption of the normal physiological role of the wings during hibernation is key to explaining the mortality of this disease.

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Anniversary Update   Open Access

Fuzzy species revisited

William P Hanage BMC Biology 2013, 11:41 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

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397
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Research article   Open Access

Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss

Tao Zhu, Deng-Ke Niu BMC Biology 2013, 11:23 (5 March 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

It is well established that intron loss is common in gene evolution, but three competing theories have been proposed to explain it. A new study supports the model involving reverse transcription, by analysing genomic byproducts of reverse transcriptase activity.

67.

389
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Anniversary Update   Open Access

Segment assembly, structure alignment and iterative simulation in protein structure prediction

Yang Zhang, Jeffrey Skolnick BMC Biology 2013, 11:44 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

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Research article   Open Access

Disruption of genital ridge development causes aberrant primordial germ cell proliferation but does not affect their directional migration

Su-Ren Chen, Qiao-Song Zheng, Yang Zhang, Fei Gao, Yi-Xun Liu BMC Biology 2013, 11:22 (5 March 2013)

Abstract | Full text | PDF | PubMed

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Review   Open Access Highly Accessed

The pupylation pathway and its role in mycobacteria

Jonas Barandun, Cyrille L Delley, Eilika Weber-Ban BMC Biology 2012, 10:95 (30 November 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Small-molecule post-translational modification of proteins, long thought to be exclusive to eukaryotes, has recently turned up in Actinobacteria, including the pathogen M .tuberculosis, in which the structurally unrelated pupylation pathway seems functionally analogous to eukaryotic ubiquitination. Eilika Weber-Ban and colleagues review what is known of its mechanisms and meaning.

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Review   Open Access Highly Accessed

Following the genes: a framework for animal modeling of psychiatric disorders

Kevin J Mitchell, Z Josh Huang, Bita Moghaddam, Akira Sawa BMC Biology 2011, 9:76 (11 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Following a brief overview of the revolution in psychiatric genetics, Kevin Mitchell and colleagues explain how the effects of causal mutations can be studied in animals to elucidate pathogenic mechanisms and neurobiological phenotypes of direct relevance to human disease.

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Research article   Open Access Highly Accessed

Origin and global diversification patterns of tropical rain forests: inferences from a complete genus-level phylogeny of palms

Thomas LP Couvreur, Félix Forest, William J Baker BMC Biology 2011, 9:44 (16 June 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 2 comments |  Editor’s summary

Knowing how rainforest biodiversity arose will be useful in predicting reactions to its loss. A synthesis of molecular and fossil data on palms suggests diversity has slowly accumulated over the past 100 million years, rather than being the product of a rapid diversification.

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383
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Research article   Open Access Highly Accessed

Excessive folate synthesis limits lifespan in the C. elegans: E. coli aging model

Bhupinder Virk, Gonçalo Correia, David P Dixon, Inna Feyst, Jie Jia, Nikolin Oberleitner, Zoe Briggs, Emily Hodge, Robert Edwards, John Ward, David Gems, David Weinkove BMC Biology 2012, 10:67 (31 July 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

David Weinkove and colleagues report an accidental discovery in C. elegans that has led them to a series of studies implicating folate in excess of needs in limiting lifespan, with interesting hints from the effects of sulfonamide drugs that the same may apply to mammals.

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387
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Research article   Open Access

Bacteroides thetaiotaomicron and Faecalibacterium prausnitzii influence the production of mucus glycans and the development of goblet cells in the colonic epithelium of a gnotobiotic model rodent

Laura Wrzosek, Sylvie Miquel, Marie-Louise Noordine, Stephan Bouet, Marie Joncquel Chevalier-Curt, Véronique Robert, Catherine Philippe, Chantal Bridonneau, Claire Cherbuy, Catherine Robbe-Masselot, Philippe Langella, Muriel Thomas BMC Biology 2013, 11:61 (21 May 2013)

Abstract | Provisional PDF | PubMed

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379
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Comment   Open Access

Open questions: Chromosome condensation - Why does a chromosome look like a chromosome?

Frank Uhlmann BMC Biology 2013, 11:9 (31 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

In his contribution to the ‘Open questions’ anniversary collection for BMC Biology, Frank Uhlmann poses the unsolved problem of chromosome packaging

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376
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Anniversary Update   Open Access

Systematic curation of protein and genetic interaction data for computable biology

Kara Dolinski, Andrew Chatr-aryamontri, Mike Tyers BMC Biology 2013, 11:43 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

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Research article   Open Access Highly Accessed

Evidence for inhibition of cholinesterases in insect and mammalian nervous systems by the insect repellent deet

Vincent Corbel, Maria Stankiewicz, Cédric Pennetier, Didier Fournier, Jure Stojan, Emmanuelle Girard, Mitko Dimitrov, Jordi Molgó, Jean-Marc Hougard, Bruno Lapied BMC Biology 2009, 7:47 (5 August 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Deet, an insect repellent used by 200 million people a year, not only modifies insect behavior but also inhibits cholinesterase in insects and mammals, and interacts with the carbamate insecticides to increase their toxicity.

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Commentary   Open Access Highly Accessed

Role of aerobic glycolysis in genetically engineered mouse models of cancer

Chi V Dang BMC Biology 2013, 11:3 (23 January 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Chi Van Dang gives his perspective on research published in the newly launched Cancer and Metabolism suggesting a new target for intervention in the aerobic glycolysis that supports tumor development.

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Interview   Open Access

Two structure papers, a call from Frankfurt airport, and how to escape from reviewer delays: An interview with Peter Walter

Peter Walter, Miranda Robertson BMC Biology 2013, 11:34 (15 April 2013)

Full text | PDF | PubMed | Cited on BioMed Central

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Research article   Open Access Highly Accessed

Late-acting dominant lethal genetic systems and mosquito control

Hoang Phuc, Morten H Andreasen, Rosemary S Burton, Céline Vass, Matthew J Epton, Gavin Pape, Guoliang Fu, Kirsty C Condon, Sarah Scaife, Christl A Donnelly, Paul G Coleman, Helen White-Cooper, Luke Alphey BMC Biology 2007, 5:11 (20 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

By engineering transgenic mosquitoes with a lethal genetic system that is activated late rather than early, mathematical modeling reveals it is possible to kill mosquito populations more effectively and prevent them spreading diseases such as malaria.

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Research article   Open Access Highly Accessed

Darcin: a male pheromone that stimulates female memory and sexual attraction to an individual male's odour

Sarah A Roberts, Deborah M Simpson, Stuart D Armstrong, Amanda J Davidson, Duncan H Robertson, Lynn McLean, Robert J Beynon, Jane L Hurst BMC Biology 2010, 8:75 (3 June 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Jane Hurst and colleagues have identified a male specific signalling protein, 'darcin', in mouse urine that attracts females and is responsible for learned preference for specific males.

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Software   Open Access Highly Accessed

MESSA: MEta-Server for protein Sequence Analysis

Qian Cong, Nick V Grishin BMC Biology 2012, 10:82 (2 October 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Using amalgamated sequence alignments to generate information about local sequence properties, 3D structure and protein function, the new meta-server MESSA provides an integrated, holistic view of proteins via a user-friendly interface.

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Commentary   Open Access Highly Accessed

Ethylene and the regulation of plant development

G Schaller BMC Biology 2012, 10:9 (20 February 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

G. Eric Schaller explores the question of how plants integrate hormonal signals into particular developmental pathways, discussing research in BMC Biology on a role for the transcription factor FUSCA3, in concert with ethylene, in timing the conversion of juvenile to adult leaves.

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Commentary   Open Access Highly Accessed

Predicting the evolution of antibiotic resistance

Martijn F Schenk, J Arjan GM de Visser BMC Biology 2013, 11:14 (22 February 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Commenting on research in BMC Evolutionary Biology, Arjan de Visser and Martijn Schenk discuss how two genetic properties, pleiotropy and epistasis, might help us to predict the evolution of antibiotic resistance.

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Research article   Open Access Highly Accessed

Updating the evolutionary history of Carnivora (Mammalia): a new species-level supertree complete with divergence time estimates

Katrin Nyakatura, Olaf RP Bininda-Emonds BMC Biology 2012, 10:12 (27 February 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A new "supertree" phylogeny covering all carnivore species has been constructed, with revised groupings representing the advances in phylogenetic practice since the previous complete tree was published in 1999.

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Question and Answer   Open Access Highly Accessed

Q&A: What is regeneration, and why look to planarians for answers?

Alejandro Sánchez Alvarado BMC Biology 2012, 10:88 (8 November 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

What controls regeneration? Alejandro Sanchez Alvarado explores this old question in biology in a Q&A explaining what we understand from planarians - non-parasitic flatworms all of whose tissues can regenerate.

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Research article   Open Access Highly Accessed

Y chromosome evidence of earliest modern human settlement in East Asia and multiple origins of Tibetan and Japanese populations

Hong Shi, Hua Zhong, Yi Peng, Yong-Li Dong, Xue-Bin Qi, Feng Zhang, Lu-Fang Liu, Si-Jie Tan, Runlin Z Ma, Chun-Jie Xiao, R Spencer Wells, Li Jin, Bing Su BMC Biology 2008, 6:45 (29 October 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Evidence from a newly studied Y-chromosome line suggests that the first northward expansion of humans through East Asia was much earlier than previously believed, as well as multiple independent migrations into Tibet and Japan.

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316
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Research article   Open Access Highly Accessed

Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish

Masato Yoshizawa, Yoshiyuki Yamamoto, Kelly E O'Quin, William R Jeffery BMC Biology 2012, 10:108 (27 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The evolutionary loss of eyes is a process repeated in different cavefish populations, and both neutral and adaptive explanations have been put forward. A study of genetic linkage in an Astyanax population suggests that an antagonostic relationship between eye development and sensors for detecting vibration - an important behaviour in the dark cave environment - is responsible.

 

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Review   Open Access Highly Accessed

Assessing the human immune system through blood transcriptomics

Damien Chaussabel, Virginia Pascual, Jacques Banchereau BMC Biology 2010, 8:84 (1 July 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Chaussabel and colleagues review the contributions of blood transcriptomics to identifying therapeutically relevant signatures of autoimmune and infectious disease, and the challenges of developing this approach into a mainstream tool.

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Review   Open Access Highly Accessed

Stem cell biology and drug discovery

Lee L Rubin, Kelly M Haston BMC Biology 2011, 9:42 (7 June 2011)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Lee Rubin and Kelly Haston survey recent research on the contribution of pluripotent cells to modeling disease with the aim of improving the efficiency of drug discovery and prediction of unexpected drug toxicities.

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Research article   Open Access Highly Accessed

The colonization of land by animals: molecular phylogeny and divergence times among arthropods

Davide Pisani, Laura L Poling, Maureen Lyons-Weiler, S Hedges BMC Biology 2004, 2:1 (19 January 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

An unexpectedly close relationship between myriapods (millipedes, centipedes) and chelicerates (spiders, scorpions, horseshoe crabs) is revealed by a molecular phylogenetic study, which also suggests arthropods adapted to terrestrial environments relatively late in their evolutionary history.

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Research article   Open Access Highly Accessed

The functional organization of mitochondrial genomes in human cells

Francisco J Iborra, Hiroshi Kimura, Peter R Cook BMC Biology 2004, 2:9 (24 May 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Mitochondrial genomes are organised in discrete foci that are tethered to the cytoskeleton through the mitochondrial membrane. These foci are localized close to the translation machinery inside and outside the mitochondrion.

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Research article   Open Access

Mapping cortical hubs in tinnitus

Winfried Schlee, Nadia Mueller, Thomas Hartmann, Julian Keil, Isabel Lorenz, Nathan Weisz BMC Biology 2009, 7:80 (23 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Patients with tinnitus exhibit alterations in the functional coupling of long-range cortical networks, showing a top-down influence on temporal cortices related to conscious perception of the distressing tinnitus tone.

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Commentary   Open Access Highly Accessed

A central role for p38 MAPK in the early transcriptional response to stress

Alan J Whitmarsh BMC Biology 2010, 8:47 (27 April 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Alan Whitmarsh comments on a study in BMC Genomics that establishes mitogen-activated protein kinase p38 as an essential regulator of the early transcriptional response to different types of cell stress.

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274
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Research article   Open Access Highly Accessed

Alterations at the peptidyl transferase centre of the ribosome induced by the synergistic action of the streptogramins dalfopristin and quinupristin

Jörg M Harms, Frank Schlünzen, Paola Fucini, Heike Bartels, Ada Yonath BMC Biology 2004, 2:4 (1 April 2004)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Analysis of the crystal structure of the Deinococcus radiodurans ribosome reveals how two antibiotics, streptogramin A and B, synergize to inhibit bacterial protein synthesis.

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Opinion   Open Access Highly Accessed

Cilia, calcium and the basis of left-right asymmetry

Dominic P Norris BMC Biology 2012, 10:102 (19 December 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

What determines left-right asymmetry in the early embryo? Dominic Norris reviews recent insights into mechanisms, including the role of cilia, a leftward flow of liquid in the embryo and asymmetric activation gene activation.

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Research article   Open Access

Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts

José Viñuelas, Gaël Kaneko, Antoine Coulon, Elodie Vallin, Valérie Morin, Camila Mejia-Pous, Jean-Jacques Kupiec, Guillaume Beslon, Olivier Gandrillon BMC Biology 2013, 11:15 (25 February 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A combined biological and computational approach adds further detail to a growing body of evidence that most genes undergo short bursts of transcription interspersed between long periods of downtime.

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Research article   Open Access

Drosophila EGFR pathway coordinates stem cell proliferation and gut remodeling following infection

Nicolas Buchon, Nichole A Broderick, Takayuki Kuraishi, Bruno Lemaitre BMC Biology 2010, 8:152 (22 December 2010)

Abstract | Full text | PDF | PubMed | F1000 Biology |  Editor’s summary

The integrity of the gut in the face of damage and infection depends on coordinated processes of clearance and reconstruction. Lemaitre and colleagues show how in Drosophila gut cells, and important model system, this remodelling is orchestrated by the EGFR pathway

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255
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Review   Open Access

Generation and physiological roles of linear ubiquitin chains

Henning Walczak, Kazuhiro Iwai, Ivan Dikic BMC Biology 2012, 10:23 (15 March 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Henning Walczak, Kazuhiro Iwai and Ivan Dikic explain what is known of the assembly of linear ubiquitin chains, and discuss the evidence for their role in the regulation of inflammatory immune responses.

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Commentary   Open Access Highly Accessed

Altered metabolism in cancer

Jason W Locasale, Lewis C Cantley BMC Biology 2010, 8:88 (25 June 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Cancer cells have metabolic requirements that differ from those of normal cells. Locasale and Cantley discuss how they reconfigure metabolic pathway fluxes to support cell-autonomous proliferation.

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Research article   Open Access Highly Accessed

Polyploidization increases meiotic recombination frequency in Arabidopsis

Ales Pecinka, Wei Fang, Marc Rehmsmeier, Avraham A Levy, Ortrun Mittelsten Scheid BMC Biology 2011, 9:24 (21 April 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

In evolutionary terms, polyploidy has both costs and benefits for an organism. Help in quantifying these is given by an elegant assay involving fluorescent Arabidopsis seeds, which shows that polyploids have an elevated rate of meiotic recombination.

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