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  • Image attributed to: Taken from Ferreira et al. BMC Bioinformatics 2014, 15:  fig 1

    Cache-Oblivious Parallel SIMD Viterbi (COPS)

    COPS introduces an optimized vectorization of the Viterbi decoding algorithm built to work with the HMMER tool suite to improve speed of biological sequence analysis, with long and short models being processed up to two times faster.

    BMC Bioinformatics 2014, 15:165
  • Image attributed to: Taken from Roux et al. BMC Bioinformatics 2014, fig 6

    Viral metagenome analysis web server

    Metavir 2 provides  a user-friendly comprehensive analysis environment for viral metagenomes,  including tools for multiple comparison and analysis, both from raw reads and from contig-assembled viromes.

    BMC Bioinformatics 2014, 15:76
  • Image attributed to: Flickr creative commons

    Fetal gene expression project database

    DFLAT, designed for curating human fetal gene functions by combining the existing Gene Ontology framework with 13,344 new annotations, is available for use in novel developmental genomics analyses.

    BMC Bioinformatics 2014, 15:45
  • Image attributed to: By Ltshears - Trisha M Shears (Own work) [Public domain]

    HTS-based method to identify rare species

    HTS barcode checker pipeline is software for identifying illegally traded species in DNA mixtures, using DNA barcodes compared against the NCBI database for CITES-protected species, though not intended for Whole Genome Shotgun data.

    BMC Bioinformatics 2014, 15:44
  • Image attributed to: Shaury Nash, Flickr, Attribution-ShareAlike License

    SInC for SNPs, Indels and CNVs

    This multi-variant simulator and read-generator tool efficiently generates single- and paired-end reads with user-defined insert size, and is currently optimized to simulate short sequence reads with deep coverage for large genomes, in a limited infrastructure setup.

    BMC Bioinformatics 2014, 15:40
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