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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 14 Supplement 10

Selected articles from the 10th International Workshop on Computational Systems Biology (WCSB) 2013: Bioinformatics

Research

10th International Workshop on Computational Systems Biology

Tampere, Finland

10-12 June 2013

Edited by Reija Autio, Ilya Shmulevich, Korbinian Strimmer and Carsten Wiuf

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. Articles have undergone the journal's standard peer-review process for supplements. The Supplement Editors declare that they have no competing interests.

Conference website

Research   Open Access

Classification of genomic signals using dynamic time warping

Helena Skutkova, Martin Vitek, Petr Babula, Rene Kizek, Ivo Provaznik BMC Bioinformatics 2013, 14(Suppl 10):S1 (12 August 2013)

Abstract | Full text | PDF | ePUB

Research   Open Access

Evaluating a linear k-mer model for protein-DNA interactions using high-throughput SELEX data

Juhani Kähärä, Harri Lähdesmäki BMC Bioinformatics 2013, 14(Suppl 10):S2 (12 August 2013)

Abstract | Full text | PDF | ePUB

Research   Open Access

A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana

Catherine F Higham, Dirk Husmeier BMC Bioinformatics 2013, 14(Suppl 10):S3 (12 August 2013)

Abstract | Full text | PDF | ePUB

Research   Open Access

Computing preimages of Boolean networks

Johannes Klotz, Martin Bossert, Steffen Schober BMC Bioinformatics 2013, 14(Suppl 10):S4 (12 August 2013)

Abstract | Full text | PDF | ePUB

Research   Open Access

ZebIAT, an image analysis tool for registering zebrafish embryos and quantifying cancer metastasis

Teppo Annila, Eero Lihavainen, Ines J Marques, Darren R Williams, Olli Yli-Harja, Andre Ribeiro BMC Bioinformatics 2013, 14(Suppl 10):S5 (12 August 2013)

Abstract | Full text | PDF | ePUB

Research   Open Access

Multi-scale Gaussian representation and outline-learning based cell image segmentation

Muhammad Farhan, Pekka Ruusuvuori, Mario Emmenlauer, Pauli Rämö, Christoph Dehio, Olli Yli-Harja BMC Bioinformatics 2013, 14(Suppl 10):S6 (12 August 2013)

Abstract | Full text | PDF | ePUB

Research   Open Access

Modeling of 2D diffusion processes based on microscopy data: parameter estimation and practical identifiability analysis

Sabrina Hock, Jan Hasenauer, Fabian J Theis BMC Bioinformatics 2013, 14(Suppl 10):S7 (12 August 2013)

Abstract | Full text | PDF | ePUB

Research   Open Access

Cell segmentation by multi-resolution analysis and maximum likelihood estimation (MAMLE)

Sharif Chowdhury, Meenakshisundaram Kandhavelu, Olli Yli-Harja, Andre S Ribeiro BMC Bioinformatics 2013, 14(Suppl 10):S8 (12 August 2013)

Abstract | Full text | PDF | ePUB

Research   Open Access

Mapping behavioral specifications to model parameters in synthetic biology

Heinz Koeppl, Marc Hafner, James Lu BMC Bioinformatics 2013, 14(Suppl 10):S9 (12 August 2013)

Abstract | Full text | PDF | ePUB


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