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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 13 Supplement 2

Proceedings from the Great Lakes Bioinformatics Conference 2011

Proceedings

Great Lakes Bioinformatics Conference 2011

Athens, OH, USA

2-4 May 2011

Edited by Robert A Colvin and Jundong Liu

Conference website

Preface   Open Access

Preface

Robert A Colvin, Jundong Liu BMC Bioinformatics 2012, 13(Suppl 2):I1 (13 March 2012)

Full text | PDF | PubMed

Proceedings   Open Access

Reordering based integrative expression profiling for microarray classification

Xiaogang Wu, Hui Huang, Madhankumar Sonachalam, Sina Reinhard, Jeffrey Shen, Ragini Pandey, Jake Y Chen BMC Bioinformatics 2012, 13(Suppl 2):S1 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data

Zhi Han, Lu Tian, Thierry Pécot, Tim Huang, Raghu Machiraju, Kun Huang BMC Bioinformatics 2012, 13(Suppl 2):S2 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Amino acid function and docking site prediction through combining disease variants, structure alignments, sequence alignments, and molecular dynamics: a study of the HMG domain

Jeremy W Prokop, Thomas C Leeper, Zhong-Hui Duan, Amy Milsted BMC Bioinformatics 2012, 13(Suppl 2):S3 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

THINK Back: KNowledge-based Interpretation of High Throughput data

Fernando Farfán, Jun Ma, Maureen A Sartor, George Michailidis, Hosagrahar V Jagadish BMC Bioinformatics 2012, 13(Suppl 2):S4 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Interfacing medicinal chemistry with structural bioinformatics: implications for T box riboswitch RNA drug discovery

Franziska Jentzsch, Jennifer V Hines BMC Bioinformatics 2012, 13(Suppl 2):S5 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Evaluation of multiple protein docking structures using correctly predicted pairwise subunits

Juan Esquivel-Rodríguez, Daisuke Kihara BMC Bioinformatics 2012, 13(Suppl 2):S6 (13 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Constructing patch-based ligand-binding pocket database for predicting function of proteins

Lee Sael, Daisuke Kihara BMC Bioinformatics 2012, 13(Suppl 2):S7 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Convergence of genetic influences in comorbidity

Richard C McEachin, Keerthi S Sannareddy, James D Cavalcoli, Alla Karnovsky, Jacqueline M Vink, Maureen A Sartor BMC Bioinformatics 2012, 13(Suppl 2):S8 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets

Adam Hughes, Yang Ruan, Saliya Ekanayake, Seung-Hee Bae, Qunfeng Dong, Mina Rho, Judy Qiu, Geoffrey Fox BMC Bioinformatics 2012, 13(Suppl 2):S9 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Matching phosphorylation response patterns of antigen-receptor-stimulated T cells via flow cytometry

Ariful Azad, Saumyadipta Pyne, Alex Pothen BMC Bioinformatics 2012, 13(Suppl 2):S10 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access Highly Accessed

Fold change and p-value cutoffs significantly alter microarray interpretations

Mark R Dalman, Anthony Deeter, Gayathri Nimishakavi, Zhong-Hui Duan BMC Bioinformatics 2012, 13(Suppl 2):S11 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Predicting glioblastoma prognosis networks using weighted gene co-expression network analysis on TCGA data

Yang Xiang, Cun-Quan Zhang, Kun Huang BMC Bioinformatics 2012, 13(Suppl 2):S12 (13 March 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Computational and experimental analyses of retrotransposon-associated minisatellite DNAs in the soybean genome

Lauren S Mogil, Kamil Slowikowski, Howard M Laten BMC Bioinformatics 2012, 13(Suppl 2):S13 (13 March 2012)

Abstract | Full text | PDF | PubMed


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