BMC Bioinformatics | Transcriptome analysis section

1.

Drug repositioning for orphan genetic diseases through Conserved Anticoexpressed Gene Clusters (CAGCs)

Ivan Molineris, Ugo Ala, Paolo Provero, Ferdinando Di Cunto BMC Bioinformatics 2013, 14:288 (2 October 2013)

2.

Archetypal analysis of diverse Pseudomonas aeruginosa transcriptomes reveals adaptation in cystic fibrosis airways

Juliane Charlotte Thøgersen, Morten Mørup, Søren Damkiær, Søren Molin, Lars Jelsbak BMC Bioinformatics 2013, 14:279 (23 September 2013)

Abstract | Provisional PDF | PubMed

3.

MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates

Caroline Bérard, Michael Seifert, Tristan Mary-Huard, Marie-Laure Martin-Magniette BMC Bioinformatics 2013, 14:271 (9 September 2013)

Abstract | Full text | PDF | PubMed

4.

μHEM for identification of differentially expressed miRNAs using hypercuboid equivalence partition matrix

Sushmita Paul, Pradipta Maji BMC Bioinformatics 2013, 14:266 (4 September 2013)

Abstract | Full text | PDF | ePUB | PubMed

5.

Ontology based molecular signatures for immune cell types via gene expression analysis

Terrence F Meehan, Nicole A Vasilevsky, Christopher J Mungall, David S Dougall, Melissa A Haendel, Judith A Blake, Alexander D Diehl BMC Bioinformatics 2013, 14:263 (30 August 2013)

Abstract | Full text | PDF | PubMed

6.

NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data

Yingtao Bi, Ramana V Davuluri BMC Bioinformatics 2013, 14:262 (27 August 2013)

Abstract | Full text | PDF | PubMed

7.

A balanced iterative random forest for gene selection from microarray data

Ali Anaissi, Paul J Kennedy, Madhu Goyal, Daniel R Catchpoole BMC Bioinformatics 2013, 14:261 (27 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Differential expression analysis with global network adjustment

Jonathan A Gelfond, Joseph G Ibrahim, Mayetri Gupta, Ming-Hui Chen, Jannine D Cody BMC Bioinformatics 2013, 14:258 (23 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments

Mikel Esnaola, Pedro Puig, David Gonzalez, Robert Castelo, Juan R Gonzalez BMC Bioinformatics 2013, 14:254 (21 August 2013)

Abstract | Full text | PDF | PubMed

10.

Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters

James Hensman, Neil D Lawrence, Magnus Rattray BMC Bioinformatics 2013, 14:252 (20 August 2013)

Abstract | Full text | PDF | PubMed

	All
	1.	Research article Drug repositioning for orphan genetic diseases through Conserved Anticoexpressed Gene Clusters (CAGCs) Ivan Molineris, Ugo Ala, Paolo Provero, Ferdinando Di Cunto BMC Bioinformatics 2013, 14:288 (2 October 2013) Abstract \| Provisional PDF
	2.	Research article Archetypal analysis of diverse Pseudomonas aeruginosa transcriptomes reveals adaptation in cystic fibrosis airways Juliane Charlotte Thøgersen, Morten Mørup, Søren Damkiær, Søren Molin, Lars Jelsbak BMC Bioinformatics 2013, 14:279 (23 September 2013) Abstract \| Provisional PDF \| PubMed
	3.	Software MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates Caroline Bérard, Michael Seifert, Tristan Mary-Huard, Marie-Laure Martin-Magniette BMC Bioinformatics 2013, 14:271 (9 September 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research article μHEM for identification of differentially expressed miRNAs using hypercuboid equivalence partition matrix Sushmita Paul, Pradipta Maji BMC Bioinformatics 2013, 14:266 (4 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	5.	Methodology article Ontology based molecular signatures for immune cell types via gene expression analysis Terrence F Meehan, Nicole A Vasilevsky, Christopher J Mungall, David S Dougall, Melissa A Haendel, Judith A Blake, Alexander D Diehl BMC Bioinformatics 2013, 14:263 (30 August 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Software NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data Yingtao Bi, Ramana V Davuluri BMC Bioinformatics 2013, 14:262 (27 August 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Methodology article A balanced iterative random forest for gene selection from microarray data Ali Anaissi, Paul J Kennedy, Madhu Goyal, Daniel R Catchpoole BMC Bioinformatics 2013, 14:261 (27 August 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	8.	Methodology article Differential expression analysis with global network adjustment Jonathan A Gelfond, Joseph G Ibrahim, Mayetri Gupta, Ming-Hui Chen, Jannine D Cody BMC Bioinformatics 2013, 14:258 (23 August 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	9.	Methodology article A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments Mikel Esnaola, Pedro Puig, David Gonzalez, Robert Castelo, Juan R Gonzalez BMC Bioinformatics 2013, 14:254 (21 August 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Research article Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters James Hensman, Neil D Lawrence, Magnus Rattray BMC Bioinformatics 2013, 14:252 (20 August 2013) Abstract \| Full text \| PDF \| PubMed

Explore BMC Bioinformatics

Articles

Display options

Download options