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Structural analysis Section edited by Adam Godzik

This section incorporates all aspects of structural analysis including but not limited to: methods and applications for the analysis of biological structures, protein structural and biophysical analysis, and structure-based drug design.

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1.

Research article   Open Access

The scoring of poses in protein-protein docking: current capabilities and future directions

Iain H Moal, Mieczyslaw Torchala, Paul A Bates, Juan Fernández-Recio BMC Bioinformatics 2013, 14:286 (1 October 2013)

Abstract | Provisional PDF

2.

Methodology article   Open Access Highly Accessed

Membrane protein orientation and refinement using a knowledge-based statistical potential

Timothy Nugent, David T Jones BMC Bioinformatics 2013, 14:276 (18 September 2013)

Abstract | Provisional PDF | PubMed

3.

Research article   Open Access Highly Accessed

A molecular model of the full-length human NOD-like receptor family CARD domain containing 5 (NLRC5) protein

János Mótyán, Péter Bagossi, Szilvia Benkő, József Tőzsér BMC Bioinformatics 2013, 14:275 (17 September 2013)

Abstract | Full text | PDF | PubMed

4.

Research article   Open Access Highly Accessed

A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition

Alok Sharma, Kuldip K Paliwal, Abdollah Dehzangi, James Lyons, Seiya Imoto, Satoru Miyano BMC Bioinformatics 2013, 14:233 (24 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

5.

Software   Open Access

Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling

Zeeshan Ahmed, Saman Zeeshan, Claudia Huber, Michael Hensel, Dietmar Schomburg, Richard Münch, Wolfgang Eisenreich, Thomas Dandekar BMC Bioinformatics 2013, 14:218 (9 July 2013)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access Highly Accessed

PFClust: a novel parameter free clustering algorithm

Lazaros Mavridis, Neetika Nath, John BO Mitchell BMC Bioinformatics 2013, 14:213 (3 July 2013)

Abstract | Full text | PDF | ePUB | PubMed | Cited on BioMed Central

7.

Research article   Open Access Highly Accessed

Automatic workflow for the classification of local DNA conformations

Petr Čech, Jaromír Kukal, Jiří Černý, Bohdan Schneider, Daniel Svozil BMC Bioinformatics 2013, 14:205 (25 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Database   Open Access

HASP server: a database and structural visualization platform for comparative models of influenza A hemagglutinin proteins

Xavier I Ambroggio, Jennifer Dommer, Vivek Gopalan, Eleca J Dunham, Jeffery K Taubenberger, Darrell E Hurt BMC Bioinformatics 2013, 14:197 (18 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

Methodology article   Open Access Highly Accessed

Utilizing protein structure to identify non-random somatic mutations

Gregory A Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao BMC Bioinformatics 2013, 14:190 (13 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

10.

Software   Open Access Highly Accessed

Δ ΔPT: a comprehensive toolbox for the analysis of protein motion

Thomas L Rodgers, David Burnell, Phil D Townsend, Ehmke Pohl, Martin J Cann, Mark R Wilson, Tom CB McLeish BMC Bioinformatics 2013, 14:183 (7 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

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