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1.
Optimal precursor ion selection for LC-MALDI MS/MS
Alexandra Zerck, Eckhard Nordhoff, Hans Lehrach, Knut Reinert BMC Bioinformatics 2013, 14 :56 (18 February 2013)
Abstract | Provisional PDF
| PubMed
2.
MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis
Brian L LaMarche, Kevin L Crowell, Navdeep Jaitly, Vladislav A Petyuk, Anuj R Shah, Ashoka D Polpitiya, John D Sandoval, Gary R Kiebel, Matthew E Monroe, Stephen J Callister, Thomas O Metz, Gordon A Anderson, Richard D Smith BMC Bioinformatics 2013, 14 :49 (12 February 2013)
Abstract | Provisional PDF
| PubMed
3.
xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data
Karan Uppal, Quinlyn A Soltow, Frederick H Strobel, W Stephen Pittard, Kim M Gernert, Tianwei Yu, Dean P Jones BMC Bioinformatics 2013, 14 :15 (16 January 2013)
Abstract | Full text | PDF
| PubMed
4.
Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework
Steven Lewis, Attila Csordas, Sarah Killcoyne, Henning Hermjakob, Michael R Hoopmann, Robert L Moritz, Eric W Deutsch, John Boyle BMC Bioinformatics 2012, 13 :324 (5 December 2012)
Abstract | Full text | PDF
| PubMed
5.
Multiple-platform data integration method with application to combined analysis of microarray and proteomic data
Shicheng Wu, Yawen Xu, Zeny Feng, Xiaojian Yang, Xiaogang Wang, Xin Gao BMC Bioinformatics 2012, 13 :320 (2 December 2012)
Abstract | Full text | PDF
| PubMed
6.
Estimating relative abundances of proteins from shotgun proteomics data
Sean McIlwain, Michael Mathews, Michael Bereman, Edwin W Rubel, Michael J MacCoss, William S Noble BMC Bioinformatics 2012, 13 :308 (19 November 2012)
Abstract | Provisional PDF
| PubMed
7.
iMS2Flux – a high–throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis
C Hart Poskar, Jan Huege, Christian Krach, Mathias Franke, Yair Shachar-Hill, Björn H Junker BMC Bioinformatics 2012, 13 :295 (12 November 2012)
Abstract | Full text | PDF
| PubMed
8.
Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching
Martin Slawski, Rene Hussong, Andreas Tholey, Thomas Jakoby, Barbara Gregorius, Andreas Hildebrandt, Matthias Hein BMC Bioinformatics 2012, 13 :291 (8 November 2012)
Abstract | Provisional PDF
| PubMed
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Editor’s summary
Identification of overlapping isotope patterns in mass spectrometric data is achieved using non-negative least squares/non-negative least absolute deviation regression, and is able to disentangle complicated overlaps of patterns.
9.
PAnalyzer: A software tool for protein inference in shotgun proteomics
Gorka Prieto, Kerman Aloria, Nerea Osinalde, Asier Fullaondo, Jesus M Arizmendi, Rune Matthiesen BMC Bioinformatics 2012, 13 :288 (5 November 2012)
Abstract | Full text | PDF
| PubMed
10.
Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
Nils Hoffmann, Matthias Keck, Heiko Neuweger, Mathias Wilhelm, Petra Högy, Karsten Niehaus, Jens Stoye BMC Bioinformatics 2012, 13 :214 (27 August 2012)
Abstract | Full text | PDF
| PubMed
